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AGRN
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near AGRN
chr1:920,119..1,156,114, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr1_921261_C_G | chr1:921261 | 1.000 | 0.401 | 1.000 | — |
| chr1_921255_G_T | chr1:921255 | -0.690 | -0.385 | -1.000 | — |
| chr1_921208_C_G | chr1:921208 | -0.618 | -0.369 | -1.000 | — |
| chr1_921250_C_G | chr1:921250 | -0.646 | -0.412 | -1.000 | — |
| chr1_921255_G_A | chr1:921255 | -0.668 | -0.363 | -1.000 | — |
| chr1_921250_C_A | chr1:921250 | -0.627 | -0.393 | -1.000 | — |
| chr1_921256_G_T | chr1:921256 | -0.568 | -0.329 | -1.000 | — |
| chr1_921259_G_T | chr1:921259 | -0.624 | -0.348 | -1.000 | — |
| chr1_921254_A_T | chr1:921254 | -0.592 | -0.363 | -1.000 | — |
| chr1_921255_G_C | chr1:921255 | -0.657 | -0.368 | -1.000 | — |
| chr1_921258_G_A | chr1:921258 | -0.562 | -0.356 | -1.000 | — |
| chr1_921249_C_A | chr1:921249 | -0.628 | -0.356 | -1.000 | — |
| chr1_921250_C_T | chr1:921250 | -0.595 | -0.372 | -1.000 | — |
| chr1_921254_A_C | chr1:921254 | -0.595 | -0.369 | -1.000 | — |
| chr1_921249_C_G | chr1:921249 | -0.618 | -0.364 | -1.000 | — |
| chr1_921247_C_T | chr1:921247 | -0.584 | -0.270 | -1.000 | <0.001% |
| chr1_921194_C_G | chr1:921194 | 0.794 | 0.369 | 1.000 | — |
| chr1_921253_C_G | chr1:921253 | -0.530 | -0.348 | -1.000 | <0.001% |
| chr1_921258_G_C | chr1:921258 | -0.535 | -0.336 | -1.000 | — |
| chr1_921242_A_G | chr1:921242 | -0.520 | -0.292 | -1.000 | — |
| chr1_921254_A_G | chr1:921254 | -0.542 | -0.327 | -1.000 | — |
| chr1_921253_C_A | chr1:921253 | -0.508 | -0.329 | -1.000 | — |
| chr1_921249_C_T | chr1:921249 | -0.582 | -0.345 | -1.000 | — |
| chr1_921256_G_C | chr1:921256 | -0.525 | -0.311 | -1.000 | — |
| chr1_921251_A_C | chr1:921251 | -0.606 | -0.368 | -1.000 | — |
| chr1_921260_A_T | chr1:921260 | -0.537 | -0.263 | -1.000 | — |
| chr1_921259_G_C | chr1:921259 | -0.557 | -0.317 | -1.000 | — |
| chr1_921199_C_T | chr1:921199 | -0.523 | -0.292 | -1.000 | — |
| chr1_921205_C_G | chr1:921205 | -0.535 | -0.326 | -1.000 | 0.0013% |
| chr1_921196_T_G | chr1:921196 | 0.693 | 0.427 | 0.930 | — |
| chr1_921203_G_A | chr1:921203 | 0.692 | 0.302 | 0.819 | 1.52% |
| chr1_921258_G_T | chr1:921258 | -0.485 | -0.261 | -1.000 | 0.0033% |
| chr1_921198_C_T | chr1:921198 | -0.470 | -0.293 | -1.000 | 0.0033% |
| chr1_921199_C_G | chr1:921199 | -0.517 | -0.312 | -1.000 | — |
| chr1_921235_G_C | chr1:921235 | -0.575 | -0.295 | -1.000 | — |
| chr1_921252_G_T | chr1:921252 | -0.443 | -0.311 | -1.000 | — |
| chr1_921257_G_A | chr1:921257 | -0.481 | -0.277 | -1.000 | — |
| chr1_921201_C_A | chr1:921201 | -0.460 | -0.287 | -1.000 | — |
| chr1_921206_G_A | chr1:921206 | -0.560 | -0.307 | -1.000 | 0.0026% |
| chr1_921207_G_T | chr1:921207 | -0.545 | -0.280 | -1.000 | — |
| chr1_921198_C_A | chr1:921198 | -0.454 | -0.270 | -1.000 | — |
| chr1_921207_G_A | chr1:921207 | -0.536 | -0.266 | -1.000 | — |
| chr1_921206_G_T | chr1:921206 | -0.513 | -0.312 | -1.000 | 0.0033% |
| chr1_921257_G_C | chr1:921257 | -0.459 | -0.278 | -1.000 | — |
| chr1_921194_C_A | chr1:921194 | 0.628 | 0.298 | 0.836 | — |
| chr1_921197_C_A | chr1:921197 | -0.356 | -0.243 | -1.000 | <0.001% |
| chr1_921200_T_A | chr1:921200 | -0.459 | -0.301 | -1.000 | — |
| chr1_921202_T_A | chr1:921202 | -0.453 | -0.273 | -1.000 | <0.001% |
| chr1_921212_A_G | chr1:921212 | -0.398 | -0.234 | -1.000 | — |
| chr1_921197_C_T | chr1:921197 | -0.339 | -0.214 | -1.000 | — |
| chr1_921207_G_C | chr1:921207 | -0.529 | -0.275 | -1.000 | — |
| chr1_921198_C_G | chr1:921198 | -0.431 | -0.264 | -1.000 | — |
| chr1_921201_C_T | chr1:921201 | -0.451 | -0.261 | -1.000 | — |
| chr1_921257_G_T | chr1:921257 | -0.416 | -0.213 | -1.000 | — |
| chr1_921193_T_C | chr1:921193 | -0.397 | -0.214 | -1.000 | — |
| chr1_921202_T_G | chr1:921202 | -0.434 | -0.267 | -1.000 | — |
| chr1_921252_G_A | chr1:921252 | -0.394 | -0.275 | -1.000 | — |
| chr1_921259_G_A | chr1:921259 | -0.474 | -0.291 | -1.000 | — |
| chr1_921204_G_A | chr1:921204 | -0.424 | -0.272 | -1.000 | — |
| chr1_921246_G_A | chr1:921246 | -0.406 | -0.198 | -0.988 | — |
| chr1_921239_C_G | chr1:921239 | -0.408 | -0.246 | -0.977 | 0.0013% |
| chr1_921205_C_A | chr1:921205 | -0.420 | -0.267 | -0.965 | — |
| chr1_921199_C_A | chr1:921199 | -0.380 | -0.241 | -0.959 | — |
| chr1_921260_A_G | chr1:921260 | -0.409 | -0.234 | -0.959 | — |
| chr1_921236_C_G | chr1:921236 | -0.392 | -0.213 | -0.953 | — |
| chr1_921201_C_G | chr1:921201 | -0.390 | -0.237 | -0.936 | — |
| chr1_921200_T_G | chr1:921200 | -0.408 | -0.258 | -0.924 | — |
| chr1_921248_C_G | chr1:921248 | 0.523 | 0.232 | 0.772 | — |
| chr1_921251_A_T | chr1:921251 | -0.462 | -0.257 | -0.906 | — |
| chr1_921248_C_A | chr1:921248 | 0.505 | 0.257 | 0.760 | — |
| chr1_921202_T_C | chr1:921202 | -0.363 | -0.236 | -0.848 | <0.001% |
| chr1_921239_C_T | chr1:921239 | -0.415 | -0.205 | -0.842 | <0.001% |
| chr1_921263_C_A | chr1:921263 | -0.422 | -0.202 | -0.830 | — |
| chr1_921203_G_C | chr1:921203 | -0.454 | -0.225 | -0.825 | — |
| chr1_921219_C_G | chr1:921219 | -0.429 | -0.191 | -0.813 | — |
| chr1_921298_C_G | chr1:921298 | -0.318 | -0.115 | -0.807 | — |
| chr1_925001_C_T | chr1:925001 | 0.063 | 0.088 | 0.882 | <0.001% |
| chr1_921232_C_G | chr1:921232 | 0.445 | 0.193 | 0.573 | — |
| chr1_921196_T_C | chr1:921196 | -0.281 | -0.194 | -0.772 | — |
| chr1_921239_C_A | chr1:921239 | -0.393 | -0.207 | -0.772 | — |
| chr1_924987_C_T | chr1:924987 | 0.072 | 0.138 | 0.856 | <0.001% |
| chr1_921197_C_G | chr1:921197 | -0.252 | -0.180 | -0.743 | — |
| chr1_921310_G_A | chr1:921310 | 0.518 | 0.214 | 0.719 | 0.0039% |
| chr1_921204_G_T | chr1:921204 | -0.310 | -0.190 | -0.731 | — |
| chr1_921251_A_G | chr1:921251 | -0.371 | -0.217 | -0.713 | — |
| chr1_924110_C_A | chr1:924110 | 0.049 | 0.061 | 0.794 | <0.001% |
| chr1_921203_G_T | chr1:921203 | -0.335 | -0.176 | -0.690 | — |
| chr1_921208_C_A | chr1:921208 | -0.302 | -0.180 | -0.661 | — |
| chr1_921263_C_G | chr1:921263 | -0.369 | -0.185 | -0.643 | — |
| chr1_921235_G_T | chr1:921235 | -0.359 | -0.180 | -0.649 | — |
| chr1_924021_C_A | chr1:924021 | 0.316 | 0.056 | 0.722 | <0.001% |
| chr1_921206_G_C | chr1:921206 | -0.329 | -0.196 | -0.626 | — |
| chr1_921305_C_T | chr1:921305 | 0.437 | 0.163 | 0.392 | 0.0013% |
| chr1_921256_G_A | chr1:921256 | -0.296 | -0.185 | -0.608 | — |
| chr1_921262_C_G | chr1:921262 | -0.321 | -0.173 | -0.608 | — |
| chr1_921266_A_G | chr1:921266 | -0.251 | -0.097 | -0.602 | — |
| chr1_921220_T_C | chr1:921220 | -0.231 | -0.139 | -0.596 | — |
| chr1_921298_C_T | chr1:921298 | -0.275 | -0.081 | -0.596 | <0.001% |
| chr1_921294_C_G | chr1:921294 | 0.331 | 0.111 | 0.363 | — |
| chr1_924277_C_A | chr1:924277 | 0.189 | 0.067 | 0.654 | <0.001% |
| chr1_921246_G_C | chr1:921246 | 0.326 | 0.175 | 0.468 | — |
| chr1_921172_G_C | chr1:921172 | -0.230 | -0.123 | -0.573 | — |
| chr1_921262_C_A | chr1:921262 | -0.298 | -0.149 | -0.573 | — |
| chr1_924958_C_A | chr1:924958 | 0.057 | 0.074 | 0.641 | <0.001% |
| chr1_921209_G_T | chr1:921209 | -0.249 | -0.155 | -0.561 | 0.0013% |
| chr1_923891_G_C | chr1:923891 | 0.190 | 0.062 | 0.627 | <0.001% |
| chr1_921221_C_G | chr1:921221 | 0.315 | 0.209 | 0.550 | — |
| chr1_924270_C_A | chr1:924270 | 0.098 | 0.047 | 0.621 | <0.001% |
| chr1_921267_G_C | chr1:921267 | -0.313 | -0.110 | -0.468 | — |
| chr1_924288_C_T | chr1:924288 | 0.067 | 0.046 | 0.608 | 0.0013% |
| chr1_924320_G_T | chr1:924320 | 0.008 | 0.054 | 0.605 | <0.001% |
| chr1_921149_G_A | chr1:921149 | 0.244 | 0.054 | 0.601 | <0.001% |
| chr1_923865_C_A | chr1:923865 | 0.036 | 0.075 | 0.601 | <0.001% |
| chr1_930878_G_A | chr1:930878 | 0.245 | 0.246 | 0.535 | 0.0099% |
| chr1_921296_G_T | chr1:921296 | -0.301 | -0.089 | -0.444 | — |
| chr1_924329_C_T | chr1:924329 | 0.054 | 0.054 | 0.592 | <0.001% |
| chr1_921298_C_A | chr1:921298 | -0.270 | -0.083 | -0.526 | — |
| chr1_924983_C_T | chr1:924983 | 0.037 | 0.072 | 0.588 | 0.173% |
| chr1_924988_C_G | chr1:924988 | 0.074 | 0.120 | 0.582 | <0.001% |
| chr1_921210_G_T | chr1:921210 | -0.225 | -0.157 | -0.515 | — |
| chr1_921277_A_G | chr1:921277 | -0.243 | -0.068 | -0.515 | — |
| chr1_921330_A_G | chr1:921330 | -0.287 | -0.075 | -0.575 | <0.001% |
| chr1_924034_G_A | chr1:924034 | 0.024 | 0.043 | 0.565 | 0.0027% |
| chr1_921286_G_C | chr1:921286 | 0.149 | 0.055 | 0.503 | — |
| chr1_921196_T_A | chr1:921196 | -0.203 | -0.123 | -0.497 | 0.0020% |
| chr1_921208_C_T | chr1:921208 | -0.236 | -0.118 | -0.497 | 0.0013% |
| chr1_921261_C_T | chr1:921261 | -0.197 | -0.122 | -0.497 | — |
| chr1_921296_G_A | chr1:921296 | -0.281 | -0.077 | -0.480 | — |
| chr1_921311_G_A | chr1:921311 | 0.351 | 0.139 | 0.471 | <0.001% |
| chr1_921237_G_A | chr1:921237 | -0.204 | -0.105 | -0.485 | 0.0033% |
| chr1_921237_G_C | chr1:921237 | -0.221 | -0.121 | -0.485 | — |
| chr1_921275_A_T | chr1:921275 | -0.275 | -0.092 | -0.433 | — |
| chr1_921297_G_T | chr1:921297 | -0.273 | -0.078 | -0.433 | — |
| chr1_924130_G_A | chr1:924130 | 0.087 | 0.040 | 0.539 | <0.001% |
| chr1_921195_C_A | chr1:921195 | 0.098 | -0.004 | 0.480 | — |
| chr1_921245_G_T | chr1:921245 | 0.209 | 0.157 | 0.480 | — |
| chr1_921306_G_T | chr1:921306 | 0.336 | 0.142 | 0.366 | <0.001% |
| chr1_923866_C_T | chr1:923866 | 0.057 | 0.062 | 0.533 | <0.001% |
| chr1_921238_G_C | chr1:921238 | -0.269 | -0.132 | -0.468 | — |
| chr1_921210_G_C | chr1:921210 | -0.211 | -0.142 | -0.474 | — |
| chr1_921294_C_T | chr1:921294 | 0.268 | 0.112 | 0.316 | — |
| chr1_921297_G_A | chr1:921297 | -0.267 | -0.077 | -0.409 | — |
| chr1_921195_C_T | chr1:921195 | -0.207 | -0.121 | -0.468 | — |
| chr1_921295_A_T | chr1:921295 | -0.265 | -0.053 | -0.292 | — |
| chr1_921295_A_C | chr1:921295 | -0.260 | -0.060 | -0.234 | — |
| chr1_924136_G_A | chr1:924136 | 0.185 | 0.044 | 0.510 | <0.001% |
| chr1_924306_C_T | chr1:924306 | 0.060 | 0.035 | 0.507 | <0.001% |
| chr1_921233_C_A | chr1:921233 | -0.251 | -0.120 | -0.450 | — |
| chr1_921264_G_A | chr1:921264 | 0.253 | 0.111 | 0.292 | 0.0026% |
| chr1_923828_A_C | chr1:923828 | -0.021 | -0.068 | -0.500 | <0.001% |
| chr1_921221_C_A | chr1:921221 | 0.252 | 0.185 | 0.444 | — |
| chr1_921296_G_C | chr1:921296 | -0.252 | -0.067 | -0.187 | — |
| chr1_921271_C_G | chr1:921271 | -0.250 | -0.079 | -0.316 | — |
| chr1_921314_G_A | chr1:921314 | -0.309 | -0.072 | -0.418 | 0.0033% |
| chr1_923863_A_C | chr1:923863 | -0.029 | -0.053 | -0.487 | <0.001% |
| chr1_925056_T_C | chr1:925056 | -0.072 | -0.071 | -0.487 | 0.0053% |
| chr1_921292_G_C | chr1:921292 | -0.246 | -0.079 | -0.292 | — |
| chr1_921215_C_T | chr1:921215 | -0.152 | -0.091 | -0.433 | — |
| chr1_921297_G_C | chr1:921297 | -0.242 | -0.072 | -0.327 | — |
| chr1_923860_G_A | chr1:923860 | 0.028 | 0.056 | 0.477 | 0.812% |
| chr1_924320_G_A | chr1:924320 | 0.016 | 0.042 | 0.474 | 0.0054% |
| chr1_921238_G_T | chr1:921238 | -0.194 | -0.111 | -0.421 | — |
| chr1_921245_G_C | chr1:921245 | 0.156 | 0.091 | 0.421 | — |
| chr1_924134_G_A | chr1:924134 | 0.075 | 0.042 | 0.471 | 0.0013% |
| chr1_924305_G_A | chr1:924305 | 0.053 | 0.048 | 0.471 | 17.2% |
| chr1_921247_C_A | chr1:921247 | -0.238 | -0.101 | -0.386 | — |
| chr1_924072_C_A | chr1:924072 | 0.039 | 0.036 | 0.467 | 0.0033% |
| chr1_924094_G_A | chr1:924094 | 0.039 | 0.041 | 0.464 | 0.0040% |
| chr1_921302_G_T | chr1:921302 | -0.233 | -0.055 | -0.292 | — |
| chr1_921216_A_T | chr1:921216 | -0.193 | -0.106 | -0.409 | <0.001% |
| chr1_921253_C_T | chr1:921253 | -0.185 | -0.113 | -0.409 | — |
| chr1_924117_G_A | chr1:924117 | 0.068 | 0.040 | 0.454 | 0.0013% |
| chr1_921213_G_T | chr1:921213 | -0.180 | -0.112 | -0.404 | — |
| chr1_921263_C_T | chr1:921263 | -0.228 | -0.099 | -0.304 | <0.001% |
| chr1_924314_C_T | chr1:924314 | 0.039 | 0.036 | 0.451 | <0.001% |
| chr1_924981_C_G | chr1:924981 | 0.074 | 0.102 | 0.451 | 0.0013% |
| chr1_924299_G_A | chr1:924299 | 0.044 | 0.040 | 0.448 | 0.0013% |
| chr1_921244_G_A | chr1:921244 | 0.167 | 0.077 | 0.398 | <0.001% |
| chr1_923876_C_T | chr1:923876 | 0.068 | 0.040 | 0.441 | <0.001% |
| chr1_925003_T_G | chr1:925003 | -0.041 | -0.049 | -0.441 | <0.001% |
| chr1_921234_A_C | chr1:921234 | -0.175 | -0.103 | -0.392 | — |
| chr1_923982_G_T | chr1:923982 | 0.042 | 0.038 | 0.438 | <0.001% |
| chr1_921236_C_A | chr1:921236 | -0.175 | -0.074 | -0.386 | — |
| chr1_921240_G_T | chr1:921240 | -0.194 | -0.102 | -0.386 | — |
| chr1_924074_G_A | chr1:924074 | 0.060 | 0.038 | 0.431 | 0.011% |
| chr1_923858_G_A | chr1:923858 | 0.013 | 0.051 | 0.428 | <0.001% |
| chr1_923875_C_T | chr1:923875 | 0.063 | 0.041 | 0.425 | <0.001% |
| chr1_924124_G_A | chr1:924124 | 0.038 | 0.034 | 0.425 | <0.001% |
| chr1_921124_C_G | chr1:921124 | 0.260 | 0.166 | 0.261 | <0.001% |
| chr1_923864_G_A | chr1:923864 | 0.018 | 0.052 | 0.412 | <0.001% |
| chr1_924002_C_A | chr1:924002 | 0.070 | 0.040 | 0.412 | <0.001% |
| chr1_924275_G_A | chr1:924275 | 0.049 | 0.038 | 0.412 | 0.0040% |
| chr1_921267_G_T | chr1:921267 | -0.207 | -0.054 | -0.292 | — |
| chr1_924323_T_G | chr1:924323 | -0.056 | -0.032 | -0.408 | 0.018% |
| chr1_921204_G_C | chr1:921204 | -0.159 | -0.108 | -0.363 | — |
| chr1_921230_G_C | chr1:921230 | -0.150 | -0.052 | -0.363 | — |
| chr1_921264_G_T | chr1:921264 | -0.162 | -0.064 | -0.363 | — |
| chr1_924279_C_T | chr1:924279 | 0.054 | 0.030 | 0.405 | 0.021% |
| chr1_924200_A_G | chr1:924200 | -0.255 | -0.025 | -0.278 | <0.001% |
| chr1_921240_G_C | chr1:921240 | -0.204 | -0.108 | -0.339 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.