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CNTN3
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near CNTN3
chr3:74,162,568..74,621,140, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR ▾ | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr3_74409096_G_C | chr3:74409096 | 17,664 | 2,976 | 5,152 | — |
| chr3_74409146_A_C | chr3:74409146 | 14,336 | 4,256 | 5,792 | — |
| chr3_74409144_A_T | chr3:74409144 | 13,728 | 4,288 | 6,016 | — |
| chr3_74175519_G_C | chr3:74175519 | 11,264 | 1,520 | 7,072 | — |
| chr3_74409140_T_G | chr3:74409140 | 10,912 | 2,880 | 5,760 | — |
| chr3_74409140_T_A | chr3:74409140 | 10,656 | 3,040 | 4,352 | — |
| chr3_74409092_C_G | chr3:74409092 | 10,368 | 2,848 | 4,096 | — |
| chr3_74409138_T_G | chr3:74409138 | 9,728 | 2,912 | 4,448 | — |
| chr3_74409146_A_T | chr3:74409146 | 9,344 | 2,496 | 3,168 | — |
| chr3_74409144_A_C | chr3:74409144 | 9,024 | 2,496 | 4,864 | — |
| chr3_74409126_C_G | chr3:74409126 | 8,672 | 2,528 | 1,472 | — |
| chr3_74409093_T_A | chr3:74409093 | 8,192 | 2,400 | 2,432 | — |
| chr3_74409092_C_A | chr3:74409092 | 8,000 | 2,304 | 3,008 | — |
| chr3_74409145_G_A | chr3:74409145 | 7,936 | 2,480 | 3,328 | — |
| chr3_74409121_C_T | chr3:74409121 | 7,744 | 2,736 | 2,016 | 1.3e-5 |
| chr3_74409146_A_G | chr3:74409146 | 7,648 | 2,368 | 3,616 | — |
| chr3_74409132_A_C | chr3:74409132 | 7,584 | 1,664 | 3,136 | — |
| chr3_74409130_T_C | chr3:74409130 | 7,296 | 1,376 | 1,632 | 6.6e-6 |
| chr3_74409145_G_C | chr3:74409145 | 7,200 | 2,112 | 2,976 | — |
| chr3_74409091_T_A | chr3:74409091 | 7,008 | 1,648 | 1,824 | — |
| chr3_74409148_C_A | chr3:74409148 | -6,240 | -2,112 | -3,104 | 6.6e-6 |
| chr3_74409147_C_G | chr3:74409147 | 6,176 | 1,568 | 1,984 | — |
| chr3_74409112_A_T | chr3:74409112 | -6,112 | -1,888 | -1,824 | — |
| chr3_74409135_C_A | chr3:74409135 | -6,016 | -1,616 | -3,104 | — |
| chr3_74409109_T_G | chr3:74409109 | -5,984 | -1,824 | -1,920 | — |
| chr3_74409144_A_G | chr3:74409144 | 5,856 | 1,728 | 3,008 | — |
| chr3_74409131_G_C | chr3:74409131 | 5,728 | 1,440 | 640 | — |
| chr3_74409091_T_C | chr3:74409091 | 5,632 | 1,248 | 2,144 | — |
| chr3_74409109_T_A | chr3:74409109 | -5,536 | -1,744 | -2,208 | — |
| chr3_74409092_C_T | chr3:74409092 | 5,472 | 1,888 | 2,624 | — |
| chr3_74409107_A_C | chr3:74409107 | -5,312 | -1,616 | -1,408 | — |
| chr3_74409143_G_A | chr3:74409143 | -5,312 | -1,584 | -2,464 | — |
| chr3_74409141_C_T | chr3:74409141 | -5,184 | -1,664 | -2,656 | — |
| chr3_74409141_C_G | chr3:74409141 | 5,024 | 1,664 | 2,080 | — |
| chr3_74409112_A_C | chr3:74409112 | -4,864 | -1,616 | -1,152 | — |
| chr3_74409152_G_A | chr3:74409152 | -4,832 | -1,248 | -1,696 | — |
| chr3_74409093_T_G | chr3:74409093 | 4,800 | 1,600 | 2,304 | — |
| chr3_74409102_G_C | chr3:74409102 | -4,768 | -1,408 | -1,952 | — |
| chr3_74409124_T_G | chr3:74409124 | 4,768 | 1,152 | 1,088 | — |
| chr3_74409083_T_C | chr3:74409083 | 4,704 | 1,376 | 1,472 | — |
| chr3_74409138_T_A | chr3:74409138 | 4,672 | 1,248 | 1,792 | — |
| chr3_74409112_A_G | chr3:74409112 | -4,608 | -1,584 | -1,280 | — |
| chr3_74409094_T_A | chr3:74409094 | 4,576 | 1,184 | 1,472 | — |
| chr3_74409140_T_C | chr3:74409140 | 4,544 | 1,408 | 2,368 | — |
| chr3_74409145_G_T | chr3:74409145 | 4,544 | 1,584 | 1,280 | — |
| chr3_74409143_G_T | chr3:74409143 | -4,480 | -1,344 | -2,112 | — |
| chr3_74409094_T_G | chr3:74409094 | 4,416 | 1,440 | 1,408 | — |
| chr3_74409124_T_C | chr3:74409124 | -4,288 | -1,216 | -1,408 | 6.6e-6 |
| chr3_74409152_G_C | chr3:74409152 | -4,288 | -1,264 | -1,696 | — |
| chr3_74409123_A_C | chr3:74409123 | -4,192 | -1,296 | -1,344 | — |
| chr3_74409133_G_C | chr3:74409133 | 4,192 | 1,056 | 1,504 | — |
| chr3_74409093_T_C | chr3:74409093 | 4,160 | 1,200 | 1,664 | — |
| chr3_74409089_G_T | chr3:74409089 | -3,968 | -912 | -1,728 | — |
| chr3_74409156_T_A | chr3:74409156 | -3,968 | -608 | 64 | — |
| chr3_74409150_G_C | chr3:74409150 | -3,904 | -1,056 | -896 | — |
| chr3_74409129_C_T | chr3:74409129 | -3,872 | -1,488 | -3,136 | — |
| chr3_74409088_T_C | chr3:74409088 | 3,776 | 1,088 | 1,056 | — |
| chr3_74409116_G_C | chr3:74409116 | 3,744 | 1,056 | 1,152 | — |
| chr3_74409116_G_A | chr3:74409116 | 3,712 | 1,440 | 832 | — |
| chr3_74409083_T_A | chr3:74409083 | 3,648 | 1,104 | 1,152 | — |
| chr3_74409130_T_G | chr3:74409130 | 3,648 | -128 | -416 | — |
| chr3_74409082_T_A | chr3:74409082 | 3,616 | 1,072 | 960 | — |
| chr3_74409136_T_C | chr3:74409136 | 3,616 | 784 | 2,272 | — |
| chr3_74409090_G_C | chr3:74409090 | 3,584 | 912 | 1,408 | — |
| chr3_74409121_C_G | chr3:74409121 | 3,584 | 1,296 | 1,248 | — |
| chr3_74409150_G_T | chr3:74409150 | -3,520 | -1,072 | -1,280 | — |
| chr3_74409085_C_T | chr3:74409085 | 3,488 | 768 | -1,184 | — |
| chr3_74409130_T_A | chr3:74409130 | 3,488 | 384 | -448 | — |
| chr3_74409122_C_G | chr3:74409122 | -3,424 | -1,136 | -768 | — |
| chr3_74409123_A_T | chr3:74409123 | 3,424 | 1,024 | 1,216 | — |
| chr3_74409077_A_C | chr3:74409077 | 3,392 | 848 | 1,696 | — |
| chr3_74409095_G_T | chr3:74409095 | 3,392 | 576 | 1,248 | — |
| chr3_74409125_T_A | chr3:74409125 | -3,392 | -800 | -1,024 | — |
| chr3_74409148_C_G | chr3:74409148 | -3,360 | -1,024 | -704 | — |
| chr3_74409114_A_G | chr3:74409114 | -3,328 | -1,152 | -448 | — |
| chr3_74409128_C_T | chr3:74409128 | -3,200 | -1,856 | -3,392 | — |
| chr3_74409081_C_G | chr3:74409081 | 3,200 | 832 | 1,152 | — |
| chr3_74409099_C_G | chr3:74409099 | -3,200 | -928 | -1,216 | — |
| chr3_74409083_T_G | chr3:74409083 | 3,168 | 816 | 960 | — |
| chr3_74409125_T_C | chr3:74409125 | -3,104 | -816 | -1,280 | — |
| chr3_74409089_G_C | chr3:74409089 | -3,072 | -848 | -1,312 | — |
| chr3_74409094_T_C | chr3:74409094 | 3,072 | 1,056 | 1,664 | 6.6e-6 |
| chr3_74409097_G_C | chr3:74409097 | 3,072 | 736 | 1,792 | 3.0e-4 |
| chr3_74409120_G_A | chr3:74409120 | -3,072 | -1,008 | -1,664 | — |
| chr3_74409154_T_C | chr3:74409154 | -3,072 | -1,056 | -1,248 | — |
| chr3_74409080_T_A | chr3:74409080 | 3,040 | 848 | 1,056 | — |
| chr3_74409117_A_C | chr3:74409117 | 3,040 | 1,120 | 2,144 | — |
| chr3_74409129_C_G | chr3:74409129 | 3,008 | 560 | 416 | — |
| chr3_74409134_G_A | chr3:74409134 | -3,008 | -976 | -1,568 | — |
| chr3_74409111_A_T | chr3:74409111 | -2,976 | -1,168 | -1,216 | — |
| chr3_74409122_C_T | chr3:74409122 | -2,976 | -768 | -1,408 | — |
| chr3_74409155_C_T | chr3:74409155 | -2,976 | -464 | -384 | 6.6e-6 |
| chr3_74409091_T_G | chr3:74409091 | 2,944 | 800 | 1,056 | — |
| chr3_74409082_T_G | chr3:74409082 | 2,912 | 656 | 1,152 | — |
| chr3_74409088_T_A | chr3:74409088 | 2,880 | 768 | 416 | 6.6e-6 |
| chr3_74409149_A_G | chr3:74409149 | 2,816 | 704 | 1,856 | — |
| chr3_74409111_A_G | chr3:74409111 | -2,784 | -1,184 | -1,312 | — |
| chr3_74409108_G_T | chr3:74409108 | -2,752 | -352 | -512 | — |
| chr3_74409084_A_T | chr3:74409084 | 2,720 | 864 | 1,216 | — |
| chr3_74409127_A_C | chr3:74409127 | -2,720 | -1,152 | -1,536 | — |
| chr3_74409099_C_A | chr3:74409099 | 2,688 | 688 | 576 | — |
| chr3_74409122_C_A | chr3:74409122 | -2,688 | -672 | -960 | 6.6e-6 |
| chr3_74409110_A_G | chr3:74409110 | -2,592 | -1,120 | -448 | — |
| chr3_74409107_A_T | chr3:74409107 | -2,560 | -496 | -832 | — |
| chr3_74409113_T_G | chr3:74409113 | -2,560 | -1,040 | -416 | — |
| chr3_74409131_G_A | chr3:74409131 | -2,560 | -704 | -1,696 | — |
| chr3_74409077_A_T | chr3:74409077 | 2,496 | 672 | 1,184 | — |
| chr3_74409129_C_A | chr3:74409129 | 2,496 | 160 | -736 | — |
| chr3_74409138_T_C | chr3:74409138 | 2,496 | 672 | 1,408 | — |
| chr3_74409081_C_T | chr3:74409081 | 2,464 | 704 | 928 | 6.6e-6 |
| chr3_74409132_A_T | chr3:74409132 | 2,464 | 800 | 1,280 | — |
| chr3_74409136_T_G | chr3:74409136 | 2,464 | 400 | 1,440 | — |
| chr3_74409142_T_G | chr3:74409142 | -2,368 | -864 | -448 | — |
| chr3_74409088_T_G | chr3:74409088 | -2,336 | -640 | -1,056 | — |
| chr3_74409115_A_C | chr3:74409115 | 2,336 | 512 | 1,280 | — |
| chr3_74409108_G_C | chr3:74409108 | -2,272 | -544 | -192 | — |
| chr3_74409142_T_A | chr3:74409142 | 2,272 | 608 | 832 | — |
| chr3_74409147_C_T | chr3:74409147 | 2,272 | 672 | 384 | — |
| chr3_74409134_G_C | chr3:74409134 | 2,208 | 512 | 608 | — |
| chr3_74409056_T_A | chr3:74409056 | 2,176 | 688 | 928 | — |
| chr3_74409084_A_G | chr3:74409084 | 2,176 | 736 | 1,600 | — |
| chr3_74409117_A_T | chr3:74409117 | 2,176 | 1,168 | 1,824 | — |
| chr3_74409128_C_A | chr3:74409128 | -2,144 | -992 | -2,368 | — |
| chr3_74409080_T_G | chr3:74409080 | 2,144 | 688 | 1,184 | — |
| chr3_74409128_C_G | chr3:74409128 | 2,112 | -128 | -960 | — |
| chr3_74409133_G_T | chr3:74409133 | -2,080 | -608 | -1,664 | — |
| chr3_74409076_G_C | chr3:74409076 | 2,048 | 416 | 1,024 | — |
| chr3_74409153_C_G | chr3:74409153 | -2,048 | -336 | -704 | — |
| chr3_74409075_G_A | chr3:74409075 | -1,984 | -544 | -896 | — |
| chr3_74409076_G_A | chr3:74409076 | 1,984 | 592 | 640 | — |
| chr3_74409105_A_G | chr3:74409105 | -1,984 | -688 | -448 | — |
| chr3_74409106_A_T | chr3:74409106 | -1,952 | -784 | -768 | — |
| chr3_74409118_A_T | chr3:74409118 | -1,952 | -608 | -640 | — |
| chr3_74409095_G_C | chr3:74409095 | 1,920 | 256 | 1,248 | — |
| chr3_74409135_C_G | chr3:74409135 | -1,920 | -560 | -1,120 | — |
| chr3_74409104_T_G | chr3:74409104 | -1,888 | -592 | -288 | — |
| chr3_74409127_A_T | chr3:74409127 | -1,824 | -656 | -2,048 | — |
| chr3_74409081_C_A | chr3:74409081 | 1,824 | 496 | 320 | — |
| chr3_74409100_A_T | chr3:74409100 | -1,824 | -576 | -224 | — |
| chr3_74409141_C_A | chr3:74409141 | 1,792 | 624 | 352 | — |
| chr3_74409045_T_A | chr3:74409045 | 1,760 | 528 | 992 | — |
| chr3_74409082_T_C | chr3:74409082 | 1,760 | 544 | 1,120 | — |
| chr3_74409119_G_T | chr3:74409119 | 1,728 | -192 | -288 | — |
| chr3_74409123_A_G | chr3:74409123 | 1,728 | 288 | 1,280 | — |
| chr3_74409047_T_A | chr3:74409047 | 1,664 | 480 | 640 | — |
| chr3_74409078_T_A | chr3:74409078 | 1,664 | 432 | 544 | — |
| chr3_74409079_G_C | chr3:74409079 | 1,664 | 368 | 256 | — |
| chr3_74409111_A_C | chr3:74409111 | -1,664 | -768 | -352 | — |
| chr3_74409126_C_T | chr3:74409126 | -1,664 | -448 | -928 | — |
| chr3_74409000_A_G | chr3:74409000 | -1,632 | -416 | 384 | — |
| chr3_74409099_C_T | chr3:74409099 | -1,632 | -432 | -768 | — |
| chr3_74409070_T_C | chr3:74409070 | -1,600 | -560 | -128 | 6.6e-6 |
| chr3_74409085_C_A | chr3:74409085 | 1,600 | 544 | 32 | — |
| chr3_74409139_C_A | chr3:74409139 | 1,600 | 608 | 96 | — |
| chr3_74409142_T_C | chr3:74409142 | 1,600 | 352 | 1,248 | — |
| chr3_74409149_A_T | chr3:74409149 | -1,600 | -368 | -224 | — |
| chr3_74409074_A_C | chr3:74409074 | 1,568 | 272 | 896 | — |
| chr3_74409086_C_G | chr3:74409086 | -1,568 | -416 | -576 | — |
| chr3_74409136_T_A | chr3:74409136 | 1,568 | 256 | 480 | — |
| chr3_74409148_C_T | chr3:74409148 | -1,568 | -480 | -1,024 | — |
| chr3_74409150_G_A | chr3:74409150 | 1,536 | 336 | 288 | — |
| chr3_74409000_A_T | chr3:74409000 | -1,472 | -208 | -512 | — |
| chr3_74409059_G_T | chr3:74409059 | 1,472 | 512 | 0 | — |
| chr3_74409071_A_C | chr3:74409071 | -1,472 | -480 | -288 | — |
| chr3_74409080_T_C | chr3:74409080 | 1,472 | 416 | 1,056 | — |
| chr3_74409107_A_G | chr3:74409107 | -1,472 | -368 | 96 | — |
| chr3_74409115_A_T | chr3:74409115 | 1,472 | 112 | 320 | — |
| chr3_74409120_G_C | chr3:74409120 | -1,472 | -576 | -576 | — |
| chr3_74409098_T_A | chr3:74409098 | 1,408 | 256 | 992 | — |
| chr3_74409098_T_G | chr3:74409098 | -1,408 | -480 | -96 | — |
| chr3_74409124_T_A | chr3:74409124 | -1,408 | -128 | -640 | — |
| chr3_74409040_A_G | chr3:74409040 | -1,376 | -288 | -160 | — |
| chr3_74409056_T_C | chr3:74409056 | 1,376 | 336 | 800 | — |
| chr3_74409065_C_A | chr3:74409065 | 1,376 | 544 | -256 | 6.6e-6 |
| chr3_74409114_A_C | chr3:74409114 | -1,376 | -368 | 320 | — |
| chr3_74409114_A_T | chr3:74409114 | -1,376 | -288 | 192 | — |
| chr3_74409155_C_A | chr3:74409155 | -1,376 | 64 | 256 | — |
| chr3_74409026_A_G | chr3:74409026 | -1,344 | -464 | 512 | — |
| chr3_74409084_A_C | chr3:74409084 | 1,312 | 576 | 896 | 3.3e-5 |
| chr3_74409151_A_C | chr3:74409151 | 1,280 | 368 | 1,792 | — |
| chr3_74409028_G_T | chr3:74409028 | 1,280 | 496 | -256 | — |
| chr3_74409032_A_C | chr3:74409032 | -1,280 | -480 | 256 | — |
| chr3_74409072_T_A | chr3:74409072 | 1,280 | 352 | 832 | — |
| chr3_74409076_G_T | chr3:74409076 | 1,280 | 224 | 320 | — |
| chr3_74409087_A_T | chr3:74409087 | 1,280 | 368 | 288 | — |
| chr3_74409050_G_C | chr3:74409050 | 1,248 | 384 | 448 | — |
| chr3_74409102_G_T | chr3:74409102 | -1,248 | -208 | -224 | — |
| chr3_74409004_A_C | chr3:74409004 | -1,216 | -512 | 64 | — |
| chr3_74409137_G_C | chr3:74409137 | 1,216 | 160 | 352 | — |
| chr3_74409061_T_C | chr3:74409061 | 1,184 | 672 | 768 | — |
| chr3_74409078_T_C | chr3:74409078 | 1,184 | 272 | 928 | — |
| chr3_74409115_A_G | chr3:74409115 | 1,184 | 464 | 1,152 | — |
| chr3_74409014_A_C | chr3:74409014 | 1,152 | 304 | 864 | — |
| chr3_74409054_T_A | chr3:74409054 | 1,152 | 496 | 608 | — |
| chr3_74409120_G_T | chr3:74409120 | 1,152 | 272 | 32 | — |
| chr3_74409137_G_T | chr3:74409137 | -1,152 | -352 | -960 | 6.6e-6 |
| chr3_74408986_G_C | chr3:74408986 | -1,120 | -208 | 32 | — |
| chr3_74409014_A_T | chr3:74409014 | 1,120 | 336 | 160 | — |
| chr3_74409126_C_A | chr3:74409126 | 800 | 192 | -1,248 | — |
| chr3_74409154_T_G | chr3:74409154 | 736 | 608 | 1,504 | — |
Showing 200 of 200 in this window. Scores are the raw center bin Δ, ALT minus REF; click a column to sort.