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CNTN3
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near CNTN3
chr3:74,162,568..74,621,140, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr3_74409096_G_C | chr3:74409096 | 0.472 | 0.242 | 0.246 | — |
| chr3_74409146_A_C | chr3:74409146 | 0.383 | 0.345 | 0.276 | — |
| chr3_74409144_A_T | chr3:74409144 | 0.367 | 0.348 | 0.287 | — |
| chr3_74175519_G_C | chr3:74175519 | 0.301 | 0.123 | 0.337 | — |
| chr3_74409140_T_G | chr3:74409140 | 0.291 | 0.234 | 0.275 | — |
| chr3_74409140_T_A | chr3:74409140 | 0.285 | 0.247 | 0.208 | — |
| chr3_74409092_C_G | chr3:74409092 | 0.277 | 0.231 | 0.195 | — |
| chr3_74409138_T_G | chr3:74409138 | 0.260 | 0.236 | 0.212 | — |
| chr3_74409146_A_T | chr3:74409146 | 0.250 | 0.203 | 0.151 | — |
| chr3_74409144_A_C | chr3:74409144 | 0.241 | 0.203 | 0.232 | — |
| chr3_74409126_C_G | chr3:74409126 | 0.232 | 0.205 | 0.070 | — |
| chr3_74409093_T_A | chr3:74409093 | 0.219 | 0.195 | 0.116 | — |
| chr3_74409092_C_A | chr3:74409092 | 0.214 | 0.187 | 0.144 | — |
| chr3_74409145_G_A | chr3:74409145 | 0.212 | 0.201 | 0.159 | — |
| chr3_74409121_C_T | chr3:74409121 | 0.207 | 0.222 | 0.096 | 0.0013% |
| chr3_74409146_A_G | chr3:74409146 | 0.204 | 0.192 | 0.173 | — |
| chr3_74409132_A_C | chr3:74409132 | 0.203 | 0.135 | 0.150 | — |
| chr3_74409130_T_C | chr3:74409130 | 0.195 | 0.112 | 0.078 | <0.001% |
| chr3_74409145_G_C | chr3:74409145 | 0.192 | 0.171 | 0.142 | — |
| chr3_74409091_T_A | chr3:74409091 | 0.187 | 0.134 | 0.087 | — |
| chr3_74409148_C_A | chr3:74409148 | -0.167 | -0.171 | -0.148 | <0.001% |
| chr3_74409147_C_G | chr3:74409147 | 0.165 | 0.127 | 0.095 | — |
| chr3_74409112_A_T | chr3:74409112 | -0.163 | -0.153 | -0.087 | — |
| chr3_74409135_C_A | chr3:74409135 | -0.161 | -0.131 | -0.148 | — |
| chr3_74409109_T_G | chr3:74409109 | -0.160 | -0.148 | -0.092 | — |
| chr3_74409144_A_G | chr3:74409144 | 0.156 | 0.140 | 0.144 | — |
| chr3_74409131_G_C | chr3:74409131 | 0.153 | 0.117 | 0.031 | — |
| chr3_74409091_T_C | chr3:74409091 | 0.150 | 0.101 | 0.102 | — |
| chr3_74409109_T_A | chr3:74409109 | -0.148 | -0.142 | -0.105 | — |
| chr3_74409092_C_T | chr3:74409092 | 0.146 | 0.153 | 0.125 | — |
| chr3_74409107_A_C | chr3:74409107 | -0.142 | -0.131 | -0.067 | — |
| chr3_74409143_G_A | chr3:74409143 | -0.142 | -0.129 | -0.118 | — |
| chr3_74409141_C_T | chr3:74409141 | -0.138 | -0.135 | -0.127 | — |
| chr3_74409141_C_G | chr3:74409141 | 0.134 | 0.135 | 0.099 | — |
| chr3_74409112_A_C | chr3:74409112 | -0.130 | -0.131 | -0.055 | — |
| chr3_74409152_G_A | chr3:74409152 | -0.129 | -0.101 | -0.081 | — |
| chr3_74409093_T_G | chr3:74409093 | 0.128 | 0.130 | 0.110 | — |
| chr3_74409102_G_C | chr3:74409102 | -0.127 | -0.114 | -0.093 | — |
| chr3_74409124_T_G | chr3:74409124 | 0.127 | 0.094 | 0.052 | — |
| chr3_74409083_T_C | chr3:74409083 | 0.126 | 0.112 | 0.070 | — |
| chr3_74409138_T_A | chr3:74409138 | 0.125 | 0.101 | 0.085 | — |
| chr3_74409112_A_G | chr3:74409112 | -0.123 | -0.129 | -0.061 | — |
| chr3_74409094_T_A | chr3:74409094 | 0.122 | 0.096 | 0.070 | — |
| chr3_74409140_T_C | chr3:74409140 | 0.121 | 0.114 | 0.113 | — |
| chr3_74409145_G_T | chr3:74409145 | 0.121 | 0.129 | 0.061 | — |
| chr3_74409143_G_T | chr3:74409143 | -0.120 | -0.109 | -0.101 | — |
| chr3_74409094_T_G | chr3:74409094 | 0.118 | 0.117 | 0.067 | — |
| chr3_74409124_T_C | chr3:74409124 | -0.115 | -0.099 | -0.067 | <0.001% |
| chr3_74409152_G_C | chr3:74409152 | -0.115 | -0.103 | -0.081 | — |
| chr3_74409123_A_C | chr3:74409123 | -0.112 | -0.105 | -0.064 | — |
| chr3_74409133_G_C | chr3:74409133 | 0.112 | 0.086 | 0.072 | — |
| chr3_74409093_T_C | chr3:74409093 | 0.111 | 0.097 | 0.079 | — |
| chr3_74409089_G_T | chr3:74409089 | -0.106 | -0.074 | -0.082 | — |
| chr3_74409156_T_A | chr3:74409156 | -0.106 | -0.049 | 0.003 | — |
| chr3_74409150_G_C | chr3:74409150 | -0.104 | -0.086 | -0.043 | — |
| chr3_74409129_C_T | chr3:74409129 | -0.103 | -0.121 | -0.150 | — |
| chr3_74409088_T_C | chr3:74409088 | 0.101 | 0.088 | 0.050 | — |
| chr3_74409116_G_C | chr3:74409116 | 0.100 | 0.086 | 0.055 | — |
| chr3_74409116_G_A | chr3:74409116 | 0.099 | 0.117 | 0.040 | — |
| chr3_74409083_T_A | chr3:74409083 | 0.097 | 0.090 | 0.055 | — |
| chr3_74409130_T_G | chr3:74409130 | 0.097 | -0.010 | -0.020 | — |
| chr3_74409082_T_A | chr3:74409082 | 0.097 | 0.087 | 0.046 | — |
| chr3_74409136_T_C | chr3:74409136 | 0.097 | 0.064 | 0.108 | — |
| chr3_74409090_G_C | chr3:74409090 | 0.096 | 0.074 | 0.067 | — |
| chr3_74409121_C_G | chr3:74409121 | 0.096 | 0.105 | 0.060 | — |
| chr3_74409150_G_T | chr3:74409150 | -0.094 | -0.087 | -0.061 | — |
| chr3_74409085_C_T | chr3:74409085 | 0.093 | 0.062 | -0.056 | — |
| chr3_74409130_T_A | chr3:74409130 | 0.093 | 0.031 | -0.021 | — |
| chr3_74409122_C_G | chr3:74409122 | -0.091 | -0.092 | -0.037 | — |
| chr3_74409123_A_T | chr3:74409123 | 0.091 | 0.083 | 0.058 | — |
| chr3_74409077_A_C | chr3:74409077 | 0.091 | 0.069 | 0.081 | — |
| chr3_74409095_G_T | chr3:74409095 | 0.091 | 0.047 | 0.060 | — |
| chr3_74409125_T_A | chr3:74409125 | -0.091 | -0.065 | -0.049 | — |
| chr3_74409128_C_T | chr3:74409128 | -0.085 | -0.151 | -0.162 | — |
| chr3_74409148_C_G | chr3:74409148 | -0.090 | -0.083 | -0.034 | — |
| chr3_74409114_A_G | chr3:74409114 | -0.089 | -0.094 | -0.021 | — |
| chr3_74409081_C_G | chr3:74409081 | 0.085 | 0.068 | 0.055 | — |
| chr3_74409099_C_G | chr3:74409099 | -0.085 | -0.075 | -0.058 | — |
| chr3_74409083_T_G | chr3:74409083 | 0.085 | 0.066 | 0.046 | — |
| chr3_74409125_T_C | chr3:74409125 | -0.083 | -0.066 | -0.061 | — |
| chr3_74409089_G_C | chr3:74409089 | -0.082 | -0.069 | -0.063 | — |
| chr3_74409094_T_C | chr3:74409094 | 0.082 | 0.086 | 0.079 | <0.001% |
| chr3_74409097_G_C | chr3:74409097 | 0.082 | 0.060 | 0.085 | 0.030% |
| chr3_74409120_G_A | chr3:74409120 | -0.082 | -0.082 | -0.079 | — |
| chr3_74409154_T_C | chr3:74409154 | -0.082 | -0.086 | -0.060 | — |
| chr3_74409080_T_A | chr3:74409080 | 0.081 | 0.069 | 0.050 | — |
| chr3_74409117_A_C | chr3:74409117 | 0.081 | 0.091 | 0.102 | — |
| chr3_74409129_C_G | chr3:74409129 | 0.080 | 0.045 | 0.020 | — |
| chr3_74409134_G_A | chr3:74409134 | -0.080 | -0.079 | -0.075 | — |
| chr3_74409111_A_T | chr3:74409111 | -0.079 | -0.095 | -0.058 | — |
| chr3_74409122_C_T | chr3:74409122 | -0.079 | -0.062 | -0.067 | — |
| chr3_74409155_C_T | chr3:74409155 | -0.079 | -0.038 | -0.018 | <0.001% |
| chr3_74409091_T_G | chr3:74409091 | 0.079 | 0.065 | 0.050 | — |
| chr3_74409082_T_G | chr3:74409082 | 0.078 | 0.053 | 0.055 | — |
| chr3_74409088_T_A | chr3:74409088 | 0.077 | 0.062 | 0.020 | <0.001% |
| chr3_74409149_A_G | chr3:74409149 | 0.075 | 0.057 | 0.089 | — |
| chr3_74409111_A_G | chr3:74409111 | -0.074 | -0.096 | -0.063 | — |
| chr3_74409108_G_T | chr3:74409108 | -0.074 | -0.029 | -0.024 | — |
| chr3_74409084_A_T | chr3:74409084 | 0.073 | 0.070 | 0.058 | — |
| chr3_74409127_A_C | chr3:74409127 | -0.073 | -0.094 | -0.073 | — |
| chr3_74409099_C_A | chr3:74409099 | 0.072 | 0.056 | 0.027 | — |
| chr3_74409122_C_A | chr3:74409122 | -0.072 | -0.055 | -0.046 | <0.001% |
| chr3_74409110_A_G | chr3:74409110 | -0.069 | -0.091 | -0.021 | — |
| chr3_74409107_A_T | chr3:74409107 | -0.068 | -0.040 | -0.040 | — |
| chr3_74409113_T_G | chr3:74409113 | -0.068 | -0.084 | -0.020 | — |
| chr3_74409131_G_A | chr3:74409131 | -0.068 | -0.057 | -0.081 | — |
| chr3_74409077_A_T | chr3:74409077 | 0.067 | 0.055 | 0.056 | — |
| chr3_74409129_C_A | chr3:74409129 | 0.067 | 0.013 | -0.035 | — |
| chr3_74409138_T_C | chr3:74409138 | 0.067 | 0.055 | 0.067 | — |
| chr3_74409081_C_T | chr3:74409081 | 0.066 | 0.057 | 0.044 | <0.001% |
| chr3_74409132_A_T | chr3:74409132 | 0.066 | 0.065 | 0.061 | — |
| chr3_74409136_T_G | chr3:74409136 | 0.066 | 0.032 | 0.069 | — |
| chr3_74409128_C_A | chr3:74409128 | -0.057 | -0.081 | -0.113 | — |
| chr3_74409142_T_G | chr3:74409142 | -0.063 | -0.070 | -0.021 | — |
| chr3_74409088_T_G | chr3:74409088 | -0.062 | -0.052 | -0.050 | — |
| chr3_74409115_A_C | chr3:74409115 | 0.062 | 0.042 | 0.061 | — |
| chr3_74409108_G_C | chr3:74409108 | -0.061 | -0.044 | -0.009 | — |
| chr3_74409142_T_A | chr3:74409142 | 0.061 | 0.049 | 0.040 | — |
| chr3_74409147_C_T | chr3:74409147 | 0.061 | 0.055 | 0.018 | — |
| chr3_74409134_G_C | chr3:74409134 | 0.059 | 0.042 | 0.029 | — |
| chr3_74409056_T_A | chr3:74409056 | 0.058 | 0.056 | 0.044 | — |
| chr3_74409084_A_G | chr3:74409084 | 0.058 | 0.060 | 0.076 | — |
| chr3_74409117_A_T | chr3:74409117 | 0.058 | 0.095 | 0.087 | — |
| chr3_74409080_T_G | chr3:74409080 | 0.057 | 0.056 | 0.056 | — |
| chr3_74409128_C_G | chr3:74409128 | 0.056 | -0.010 | -0.046 | — |
| chr3_74409133_G_T | chr3:74409133 | -0.056 | -0.049 | -0.079 | — |
| chr3_74409076_G_C | chr3:74409076 | 0.055 | 0.034 | 0.049 | — |
| chr3_74409127_A_T | chr3:74409127 | -0.049 | -0.053 | -0.098 | — |
| chr3_74409153_C_G | chr3:74409153 | -0.055 | -0.027 | -0.034 | — |
| chr3_74409075_G_A | chr3:74409075 | -0.053 | -0.044 | -0.043 | — |
| chr3_74409076_G_A | chr3:74409076 | 0.053 | 0.048 | 0.031 | — |
| chr3_74409105_A_G | chr3:74409105 | -0.053 | -0.056 | -0.021 | — |
| chr3_74409106_A_T | chr3:74409106 | -0.052 | -0.064 | -0.037 | — |
| chr3_74409118_A_T | chr3:74409118 | -0.052 | -0.049 | -0.031 | — |
| chr3_74409095_G_C | chr3:74409095 | 0.051 | 0.021 | 0.060 | — |
| chr3_74409135_C_G | chr3:74409135 | -0.051 | -0.045 | -0.053 | — |
| chr3_74409104_T_G | chr3:74409104 | -0.050 | -0.048 | -0.014 | — |
| chr3_74409081_C_A | chr3:74409081 | 0.049 | 0.040 | 0.015 | — |
| chr3_74409100_A_T | chr3:74409100 | -0.049 | -0.047 | -0.011 | — |
| chr3_74409141_C_A | chr3:74409141 | 0.048 | 0.051 | 0.017 | — |
| chr3_74409151_A_C | chr3:74409151 | 0.034 | 0.030 | 0.085 | — |
| chr3_74409045_T_A | chr3:74409045 | 0.047 | 0.043 | 0.047 | — |
| chr3_74409082_T_C | chr3:74409082 | 0.047 | 0.044 | 0.053 | — |
| chr3_74409119_G_T | chr3:74409119 | 0.046 | -0.016 | -0.014 | — |
| chr3_74409123_A_G | chr3:74409123 | 0.046 | 0.023 | 0.061 | — |
| chr3_74409047_T_A | chr3:74409047 | 0.044 | 0.039 | 0.031 | — |
| chr3_74409078_T_A | chr3:74409078 | 0.044 | 0.035 | 0.026 | — |
| chr3_74409079_G_C | chr3:74409079 | 0.044 | 0.030 | 0.012 | — |
| chr3_74409111_A_C | chr3:74409111 | -0.044 | -0.062 | -0.017 | — |
| chr3_74409126_C_T | chr3:74409126 | -0.044 | -0.036 | -0.044 | — |
| chr3_74409000_A_G | chr3:74409000 | -0.044 | -0.034 | 0.018 | — |
| chr3_74409099_C_T | chr3:74409099 | -0.044 | -0.035 | -0.037 | — |
| chr3_74409070_T_C | chr3:74409070 | -0.043 | -0.045 | -0.006 | <0.001% |
| chr3_74409085_C_A | chr3:74409085 | 0.043 | 0.044 | 0.002 | — |
| chr3_74409139_C_A | chr3:74409139 | 0.043 | 0.049 | 0.005 | — |
| chr3_74409142_T_C | chr3:74409142 | 0.043 | 0.029 | 0.060 | — |
| chr3_74409149_A_T | chr3:74409149 | -0.043 | -0.030 | -0.011 | — |
| chr3_74409074_A_C | chr3:74409074 | 0.042 | 0.022 | 0.043 | — |
| chr3_74409086_C_G | chr3:74409086 | -0.042 | -0.034 | -0.027 | — |
| chr3_74409136_T_A | chr3:74409136 | 0.042 | 0.021 | 0.023 | — |
| chr3_74409148_C_T | chr3:74409148 | -0.042 | -0.039 | -0.049 | — |
| chr3_74409150_G_A | chr3:74409150 | 0.041 | 0.027 | 0.014 | — |
| chr3_74409154_T_G | chr3:74409154 | 0.020 | 0.049 | 0.072 | — |
| chr3_74409000_A_T | chr3:74409000 | -0.039 | -0.017 | -0.024 | — |
| chr3_74409059_G_T | chr3:74409059 | 0.039 | 0.042 | 0.000 | — |
| chr3_74409071_A_C | chr3:74409071 | -0.039 | -0.039 | -0.014 | — |
| chr3_74409080_T_C | chr3:74409080 | 0.039 | 0.034 | 0.050 | — |
| chr3_74409107_A_G | chr3:74409107 | -0.039 | -0.030 | 0.005 | — |
| chr3_74409115_A_T | chr3:74409115 | 0.039 | 0.009 | 0.015 | — |
| chr3_74409120_G_C | chr3:74409120 | -0.039 | -0.047 | -0.027 | — |
| chr3_74409098_T_A | chr3:74409098 | 0.038 | 0.021 | 0.047 | — |
| chr3_74409098_T_G | chr3:74409098 | -0.038 | -0.039 | -0.005 | — |
| chr3_74409124_T_A | chr3:74409124 | -0.038 | -0.010 | -0.031 | — |
| chr3_74409040_A_G | chr3:74409040 | -0.037 | -0.023 | -0.008 | — |
| chr3_74409056_T_C | chr3:74409056 | 0.037 | 0.027 | 0.038 | — |
| chr3_74409065_C_A | chr3:74409065 | 0.037 | 0.044 | -0.012 | <0.001% |
| chr3_74409114_A_C | chr3:74409114 | -0.037 | -0.030 | 0.015 | — |
| chr3_74409114_A_T | chr3:74409114 | -0.037 | -0.023 | 0.009 | — |
| chr3_74409155_C_A | chr3:74409155 | -0.037 | 0.005 | 0.012 | — |
| chr3_74409026_A_G | chr3:74409026 | -0.036 | -0.038 | 0.024 | — |
| chr3_74409084_A_C | chr3:74409084 | 0.035 | 0.047 | 0.043 | 0.0033% |
| chr3_74409028_G_T | chr3:74409028 | 0.034 | 0.040 | -0.012 | — |
| chr3_74409032_A_C | chr3:74409032 | -0.034 | -0.039 | 0.012 | — |
| chr3_74409072_T_A | chr3:74409072 | 0.034 | 0.029 | 0.040 | — |
| chr3_74409076_G_T | chr3:74409076 | 0.034 | 0.018 | 0.015 | — |
| chr3_74409087_A_T | chr3:74409087 | 0.034 | 0.030 | 0.014 | — |
| chr3_74409050_G_C | chr3:74409050 | 0.033 | 0.031 | 0.021 | — |
| chr3_74409102_G_T | chr3:74409102 | -0.033 | -0.017 | -0.011 | — |
| chr3_74409126_C_A | chr3:74409126 | 0.021 | 0.016 | -0.060 | — |
| chr3_74409004_A_C | chr3:74409004 | -0.032 | -0.042 | 0.003 | — |
| chr3_74409137_G_C | chr3:74409137 | 0.032 | 0.013 | 0.017 | — |
| chr3_74409061_T_C | chr3:74409061 | 0.032 | 0.055 | 0.037 | — |
| chr3_74409078_T_C | chr3:74409078 | 0.032 | 0.022 | 0.044 | — |
| chr3_74409115_A_G | chr3:74409115 | 0.032 | 0.038 | 0.055 | — |
| chr3_74409014_A_C | chr3:74409014 | 0.031 | 0.025 | 0.041 | — |
| chr3_74409054_T_A | chr3:74409054 | 0.031 | 0.040 | 0.029 | — |
| chr3_74409120_G_T | chr3:74409120 | 0.031 | 0.022 | 0.002 | — |
| chr3_74409137_G_T | chr3:74409137 | -0.031 | -0.029 | -0.046 | <0.001% |
| chr3_74408986_G_C | chr3:74408986 | -0.030 | -0.017 | 0.002 | — |
| chr3_74409014_A_T | chr3:74409014 | 0.030 | 0.027 | 0.008 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.