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GGA1
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near GGA1
chr22:37,508,473..37,733,564, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr22_37519504_G_T | chr22:37519504 | 0.350 | 0.108 | 1.000 | — |
| chr22_37560435_C_G | chr22:37560435 | 0.544 | -0.055 | 0.434 | — |
| chr22_37560434_G_C | chr22:37560434 | -0.506 | 0.020 | -0.162 | — |
| chr22_37560515_C_A | chr22:37560515 | 0.496 | -0.060 | 0.063 | — |
| chr22_37560438_C_G | chr22:37560438 | -0.485 | -0.024 | -0.203 | — |
| chr22_37560427_A_C | chr22:37560427 | -0.482 | 0.013 | -0.195 | — |
| chr22_37560435_C_A | chr22:37560435 | 0.482 | 0.007 | 0.525 | — |
| chr22_37519566_G_T | chr22:37519566 | 0.480 | 0.147 | 0.760 | — |
| chr22_37560466_G_C | chr22:37560466 | -0.465 | 0.032 | -0.089 | — |
| chr22_37560516_G_A | chr22:37560516 | 0.465 | 0.062 | 0.322 | — |
| chr22_37560440_G_C | chr22:37560440 | -0.463 | 0.013 | -0.134 | — |
| chr22_37560429_A_C | chr22:37560429 | -0.462 | 0.007 | -0.333 | — |
| chr22_37519577_C_A | chr22:37519577 | -0.222 | -0.128 | -0.815 | — |
| chr22_37560437_C_G | chr22:37560437 | -0.446 | -0.046 | -0.311 | — |
| chr22_37519577_C_G | chr22:37519577 | -0.101 | -0.171 | -0.791 | — |
| chr22_37519553_G_C | chr22:37519553 | -0.297 | -0.323 | -0.779 | — |
| chr22_37519568_C_A | chr22:37519568 | -0.316 | -0.190 | -0.776 | — |
| chr22_37560423_G_C | chr22:37560423 | -0.429 | 0.032 | -0.168 | — |
| chr22_37519549_C_T | chr22:37519549 | 0.296 | 0.090 | 0.763 | — |
| chr22_37560414_G_T | chr22:37560414 | -0.424 | -0.018 | -0.134 | — |
| chr22_37560421_G_A | chr22:37560421 | 0.421 | -0.005 | 0.455 | — |
| chr22_37519502_G_A | chr22:37519502 | 0.162 | 0.172 | 0.724 | — |
| chr22_37519564_G_C | chr22:37519564 | 0.374 | -0.012 | 0.711 | — |
| chr22_37519569_T_C | chr22:37519569 | -0.376 | -0.187 | -0.660 | — |
| chr22_37519544_T_A | chr22:37519544 | -0.241 | -0.129 | -0.664 | — |
| chr22_37560409_C_G | chr22:37560409 | -0.371 | 0.050 | -0.159 | — |
| chr22_37519556_G_T | chr22:37519556 | 0.176 | -0.042 | 0.656 | — |
| chr22_37519512_C_T | chr22:37519512 | 0.280 | 0.203 | 0.650 | — |
| chr22_37560421_G_C | chr22:37560421 | 0.359 | 0.022 | 0.266 | — |
| chr22_37519520_C_A | chr22:37519520 | 0.306 | 0.149 | 0.635 | — |
| chr22_37519448_C_A | chr22:37519448 | 0.272 | -0.005 | 0.632 | — |
| chr22_37560416_C_G | chr22:37560416 | -0.352 | 0.028 | -0.096 | — |
| chr22_37519483_G_T | chr22:37519483 | 0.214 | 0.145 | 0.626 | — |
| chr22_37560524_C_T | chr22:37560524 | 0.089 | 0.052 | 0.624 | — |
| chr22_37560476_C_G | chr22:37560476 | -0.347 | 0.031 | -0.137 | — |
| chr22_37519517_C_T | chr22:37519517 | 0.275 | 0.257 | 0.605 | — |
| chr22_37519531_C_A | chr22:37519531 | 0.203 | 0.109 | 0.605 | 0.0020% |
| chr22_37560462_G_C | chr22:37560462 | -0.337 | 0.061 | 0.046 | <0.001% |
| chr22_37560529_G_T | chr22:37560529 | 0.145 | 0.078 | 0.588 | — |
| chr22_37519455_T_C | chr22:37519455 | -0.238 | -0.075 | -0.586 | — |
| chr22_37560529_G_A | chr22:37560529 | 0.120 | 0.085 | 0.585 | 0.0013% |
| chr22_37519576_G_A | chr22:37519576 | 0.292 | 0.023 | 0.583 | — |
| chr22_37519454_C_T | chr22:37519454 | 0.164 | 0.062 | 0.577 | — |
| chr22_37560420_A_G | chr22:37560420 | -0.323 | 0.005 | -0.285 | — |
| chr22_37560521_G_A | chr22:37560521 | -0.009 | 0.035 | 0.577 | — |
| chr22_37519500_G_A | chr22:37519500 | 0.202 | 0.222 | 0.568 | — |
| chr22_37560468_G_C | chr22:37560468 | 0.318 | -0.043 | 0.003 | 0.0020% |
| chr22_37560395_C_T | chr22:37560395 | 0.315 | 0.022 | 0.345 | — |
| chr22_37560526_G_T | chr22:37560526 | 0.212 | 0.086 | 0.559 | — |
| chr22_37560524_C_A | chr22:37560524 | 0.123 | 0.056 | 0.557 | — |
| chr22_37560396_G_C | chr22:37560396 | -0.311 | -0.029 | -0.192 | — |
| chr22_37560418_G_C | chr22:37560418 | -0.311 | -0.013 | -0.174 | — |
| chr22_37519554_C_A | chr22:37519554 | 0.125 | 0.040 | 0.553 | — |
| chr22_37560419_G_C | chr22:37560419 | -0.309 | -0.028 | -0.165 | — |
| chr22_37560431_C_T | chr22:37560431 | 0.308 | 0.007 | 0.211 | — |
| chr22_37560443_C_T | chr22:37560443 | 0.308 | 0.000 | 0.226 | — |
| chr22_37519511_C_T | chr22:37519511 | 0.222 | 0.106 | 0.547 | <0.001% |
| chr22_37560470_C_T | chr22:37560470 | 0.174 | 0.127 | 0.547 | — |
| chr22_37560523_G_A | chr22:37560523 | 0.092 | 0.078 | 0.547 | <0.001% |
| chr22_37560435_C_T | chr22:37560435 | 0.304 | -0.006 | 0.321 | — |
| chr22_37519456_C_A | chr22:37519456 | 0.217 | 0.125 | 0.534 | — |
| chr22_37560530_C_T | chr22:37560530 | 0.188 | 0.092 | 0.534 | — |
| chr22_37560522_C_T | chr22:37560522 | 0.116 | 0.088 | 0.533 | — |
| chr22_37560527_C_A | chr22:37560527 | 0.126 | 0.074 | 0.533 | — |
| chr22_37519514_C_A | chr22:37519514 | 0.214 | 0.138 | 0.531 | — |
| chr22_37519440_C_G | chr22:37519440 | -0.168 | -0.057 | -0.525 | — |
| chr22_37519499_C_A | chr22:37519499 | 0.103 | 0.053 | 0.525 | — |
| chr22_37560517_G_T | chr22:37560517 | 0.294 | 0.017 | 0.400 | — |
| chr22_37560409_C_T | chr22:37560409 | -0.292 | 0.015 | 0.000 | — |
| chr22_37560413_A_T | chr22:37560413 | -0.292 | -0.049 | -0.150 | — |
| chr22_37560428_C_A | chr22:37560428 | 0.291 | 0.011 | 0.260 | — |
| chr22_37519443_G_T | chr22:37519443 | 0.156 | 0.063 | 0.513 | — |
| chr22_37560411_G_C | chr22:37560411 | -0.287 | -0.049 | -0.232 | 0.0020% |
| chr22_37560522_C_A | chr22:37560522 | 0.085 | 0.072 | 0.511 | — |
| chr22_37560399_A_G | chr22:37560399 | -0.285 | 0.027 | -0.321 | — |
| chr22_37560413_A_C | chr22:37560413 | -0.285 | -0.045 | -0.360 | — |
| chr22_37560413_A_G | chr22:37560413 | -0.284 | 0.009 | -0.195 | — |
| chr22_37519513_C_T | chr22:37519513 | 0.226 | 0.144 | 0.504 | — |
| chr22_37560527_C_T | chr22:37560527 | 0.113 | 0.063 | 0.502 | — |
| chr22_37560439_C_A | chr22:37560439 | -0.280 | 0.024 | 0.003 | 0.0013% |
| chr22_37519557_T_C | chr22:37519557 | -0.084 | -0.184 | -0.498 | — |
| chr22_37560397_G_C | chr22:37560397 | -0.279 | -0.025 | -0.142 | — |
| chr22_37560414_G_A | chr22:37560414 | -0.277 | -0.034 | 0.015 | — |
| chr22_37560510_C_T | chr22:37560510 | 0.214 | 0.048 | 0.495 | — |
| chr22_37519446_C_A | chr22:37519446 | 0.171 | 0.044 | 0.489 | — |
| chr22_37560459_G_T | chr22:37560459 | 0.274 | 0.045 | 0.223 | — |
| chr22_37560429_A_T | chr22:37560429 | -0.272 | 0.009 | -0.159 | — |
| chr22_37519484_C_A | chr22:37519484 | 0.128 | 0.123 | 0.482 | — |
| chr22_37560479_C_A | chr22:37560479 | 0.270 | -0.007 | 0.339 | — |
| chr22_37560526_G_A | chr22:37560526 | 0.144 | 0.069 | 0.482 | — |
| chr22_37519538_A_C | chr22:37519538 | -0.209 | -0.183 | -0.476 | — |
| chr22_37519521_C_T | chr22:37519521 | 0.154 | 0.134 | 0.470 | — |
| chr22_37519505_T_G | chr22:37519505 | -0.084 | -0.135 | -0.467 | — |
| chr22_37519510_C_T | chr22:37519510 | 0.150 | 0.118 | 0.467 | 0.0020% |
| chr22_37519528_G_T | chr22:37519528 | 0.125 | 0.008 | 0.467 | — |
| chr22_37519514_C_T | chr22:37519514 | 0.152 | 0.155 | 0.464 | — |
| chr22_37560415_G_A | chr22:37560415 | -0.260 | 0.000 | 0.076 | — |
| chr22_37560421_G_T | chr22:37560421 | 0.260 | 0.051 | 0.308 | — |
| chr22_37560439_C_G | chr22:37560439 | -0.260 | 0.003 | -0.119 | — |
| chr22_37560530_C_A | chr22:37560530 | 0.168 | 0.077 | 0.464 | — |
| chr22_37560521_G_T | chr22:37560521 | 0.082 | 0.061 | 0.458 | — |
| chr22_37560411_G_T | chr22:37560411 | -0.253 | 0.019 | 0.073 | — |
| chr22_37560434_G_A | chr22:37560434 | -0.253 | -0.003 | -0.012 | — |
| chr22_37560525_G_T | chr22:37560525 | 0.103 | 0.055 | 0.449 | — |
| chr22_37560398_G_C | chr22:37560398 | -0.250 | -0.007 | -0.130 | — |
| chr22_37560404_A_T | chr22:37560404 | 0.250 | -0.006 | 0.093 | — |
| chr22_37519473_T_C | chr22:37519473 | -0.174 | -0.042 | -0.443 | — |
| chr22_37607027_G_A | chr22:37607027 | 0.247 | 0.151 | 0.177 | — |
| chr22_37560479_C_G | chr22:37560479 | 0.244 | -0.048 | 0.281 | — |
| chr22_37519457_C_A | chr22:37519457 | 0.094 | 0.031 | 0.434 | — |
| chr22_37560412_G_C | chr22:37560412 | -0.243 | -0.012 | -0.162 | — |
| chr22_37560454_C_T | chr22:37560454 | 0.243 | 0.051 | 0.241 | — |
| chr22_37560510_C_A | chr22:37560510 | 0.217 | 0.038 | 0.434 | — |
| chr22_37560397_G_A | chr22:37560397 | -0.241 | 0.003 | 0.056 | <0.001% |
| chr22_37519448_C_T | chr22:37519448 | 0.133 | 0.068 | 0.427 | — |
| chr22_37519461_G_A | chr22:37519461 | 0.082 | 0.138 | 0.427 | <0.001% |
| chr22_37560417_G_A | chr22:37560417 | -0.239 | 0.026 | 0.073 | — |
| chr22_37560417_G_C | chr22:37560417 | -0.239 | 0.009 | -0.070 | 0.0013% |
| chr22_37560425_C_A | chr22:37560425 | 0.239 | -0.008 | 0.192 | — |
| chr22_37519504_G_A | chr22:37519504 | 0.106 | 0.056 | 0.421 | — |
| chr22_37519563_T_A | chr22:37519563 | 0.236 | 0.026 | 0.131 | — |
| chr22_37519544_T_C | chr22:37519544 | -0.190 | -0.083 | -0.420 | — |
| chr22_37519505_T_C | chr22:37519505 | -0.126 | -0.127 | -0.415 | — |
| chr22_37519566_G_A | chr22:37519566 | 0.232 | 0.143 | 0.391 | — |
| chr22_37519548_T_C | chr22:37519548 | -0.191 | -0.124 | -0.414 | — |
| chr22_37519470_G_T | chr22:37519470 | 0.101 | 0.130 | 0.412 | — |
| chr22_37519521_C_A | chr22:37519521 | 0.171 | 0.092 | 0.412 | — |
| chr22_37519566_G_C | chr22:37519566 | 0.231 | 0.039 | 0.388 | — |
| chr22_37519455_T_G | chr22:37519455 | -0.041 | -0.088 | -0.409 | — |
| chr22_37519487_C_A | chr22:37519487 | 0.085 | 0.072 | 0.409 | — |
| chr22_37519487_C_T | chr22:37519487 | 0.082 | 0.077 | 0.409 | 0.0027% |
| chr22_37560418_G_A | chr22:37560418 | -0.229 | -0.008 | -0.082 | — |
| chr22_37560428_C_G | chr22:37560428 | 0.229 | 0.011 | 0.247 | — |
| chr22_37560523_G_T | chr22:37560523 | 0.113 | 0.044 | 0.409 | — |
| chr22_37519448_C_G | chr22:37519448 | 0.227 | -0.028 | 0.373 | — |
| chr22_37560429_A_G | chr22:37560429 | 0.227 | -0.018 | 0.018 | — |
| chr22_37560398_G_T | chr22:37560398 | -0.226 | 0.030 | 0.108 | — |
| chr22_37519442_C_T | chr22:37519442 | 0.085 | 0.060 | 0.400 | — |
| chr22_37519501_T_C | chr22:37519501 | -0.082 | -0.090 | -0.400 | <0.001% |
| chr22_37519530_C_G | chr22:37519530 | 0.224 | 0.044 | 0.180 | — |
| chr22_37519444_T_C | chr22:37519444 | -0.084 | -0.058 | -0.397 | — |
| chr22_37519500_G_T | chr22:37519500 | 0.017 | 0.044 | 0.397 | — |
| chr22_37560425_C_T | chr22:37560425 | 0.222 | -0.004 | 0.235 | — |
| chr22_37560504_G_T | chr22:37560504 | 0.222 | 0.049 | 0.237 | — |
| chr22_37560531_C_A | chr22:37560531 | 0.137 | 0.046 | 0.395 | — |
| chr22_37519459_G_A | chr22:37519459 | 0.067 | 0.077 | 0.394 | — |
| chr22_37560404_A_C | chr22:37560404 | 0.219 | -0.016 | -0.009 | 0.0014% |
| chr22_37560432_C_A | chr22:37560432 | 0.219 | 0.025 | 0.308 | — |
| chr22_37560470_C_A | chr22:37560470 | 0.116 | 0.088 | 0.391 | <0.001% |
| chr22_37519468_G_T | chr22:37519468 | 0.068 | 0.117 | 0.388 | — |
| chr22_37560472_A_C | chr22:37560472 | -0.217 | -0.037 | -0.211 | — |
| chr22_37519469_G_T | chr22:37519469 | 0.074 | 0.082 | 0.385 | — |
| chr22_37519473_T_G | chr22:37519473 | -0.031 | -0.073 | -0.385 | — |
| chr22_37560515_C_T | chr22:37560515 | 0.215 | 0.038 | 0.232 | 0.0013% |
| chr22_37519512_C_A | chr22:37519512 | 0.186 | 0.116 | 0.382 | — |
| chr22_37519557_T_G | chr22:37519557 | 0.000 | -0.150 | -0.382 | — |
| chr22_37519562_C_T | chr22:37519562 | 0.111 | 0.078 | 0.382 | — |
| chr22_37519447_C_A | chr22:37519447 | 0.108 | 0.051 | 0.379 | — |
| chr22_37560426_C_T | chr22:37560426 | 0.212 | -0.005 | 0.223 | — |
| chr22_37560498_T_C | chr22:37560498 | -0.212 | 0.018 | -0.162 | — |
| chr22_37560514_C_T | chr22:37560514 | 0.168 | 0.071 | 0.379 | — |
| chr22_37519489_C_T | chr22:37519489 | 0.060 | 0.068 | 0.376 | — |
| chr22_37519525_C_T | chr22:37519525 | 0.043 | 0.121 | 0.373 | — |
| chr22_37560395_C_A | chr22:37560395 | 0.209 | 0.028 | 0.328 | — |
| chr22_37560431_C_G | chr22:37560431 | -0.209 | -0.037 | -0.198 | — |
| chr22_37560450_C_A | chr22:37560450 | 0.209 | -0.037 | 0.082 | — |
| chr22_37560531_C_T | chr22:37560531 | 0.140 | 0.049 | 0.371 | — |
| chr22_37519475_C_A | chr22:37519475 | 0.121 | 0.035 | 0.369 | — |
| chr22_37519490_G_T | chr22:37519490 | -0.003 | 0.105 | 0.369 | — |
| chr22_37519562_C_A | chr22:37519562 | 0.082 | 0.002 | 0.369 | — |
| chr22_37560456_C_A | chr22:37560456 | 0.205 | 0.003 | 0.113 | — |
| chr22_37519548_T_G | chr22:37519548 | -0.070 | -0.084 | -0.365 | — |
| chr22_37560519_A_G | chr22:37560519 | -0.041 | -0.052 | -0.365 | — |
| chr22_37519506_C_G | chr22:37519506 | -0.060 | -0.127 | -0.363 | — |
| chr22_37560493_G_C | chr22:37560493 | -0.203 | -0.017 | -0.144 | — |
| chr22_37560397_G_T | chr22:37560397 | -0.202 | 0.025 | 0.124 | — |
| chr22_37560414_G_C | chr22:37560414 | -0.202 | -0.010 | -0.075 | — |
| chr22_37519486_G_T | chr22:37519486 | 0.043 | 0.076 | 0.357 | — |
| chr22_37519490_G_C | chr22:37519490 | -0.200 | 0.002 | -0.269 | 0.0013% |
| chr22_37519515_G_C | chr22:37519515 | -0.197 | -0.105 | -0.357 | — |
| chr22_37560437_C_T | chr22:37560437 | 0.200 | -0.004 | 0.156 | — |
| chr22_37560525_G_A | chr22:37560525 | 0.123 | 0.047 | 0.357 | <0.001% |
| chr22_37560519_A_C | chr22:37560519 | -0.133 | -0.056 | -0.356 | — |
| chr22_37519450_C_T | chr22:37519450 | 0.056 | 0.052 | 0.354 | — |
| chr22_37519478_A_G | chr22:37519478 | -0.024 | -0.079 | -0.354 | — |
| chr22_37560406_G_T | chr22:37560406 | 0.198 | 0.038 | 0.272 | <0.001% |
| chr22_37560415_G_C | chr22:37560415 | -0.198 | -0.006 | 0.003 | — |
| chr22_37560416_C_T | chr22:37560416 | -0.198 | 0.038 | 0.090 | — |
| chr22_37519441_C_T | chr22:37519441 | 0.094 | 0.042 | 0.351 | — |
| chr22_37519477_C_T | chr22:37519477 | 0.097 | 0.049 | 0.351 | <0.001% |
| chr22_37560475_G_A | chr22:37560475 | 0.051 | 0.075 | 0.351 | <0.001% |
| chr22_37519453_C_T | chr22:37519453 | 0.046 | 0.082 | 0.348 | — |
| chr22_37519499_C_T | chr22:37519499 | 0.077 | 0.016 | 0.348 | — |
| chr22_37519538_A_G | chr22:37519538 | -0.109 | -0.069 | -0.348 | 0.0014% |
| chr22_37560436_C_G | chr22:37560436 | -0.195 | -0.044 | -0.284 | — |
| chr22_37560443_C_A | chr22:37560443 | 0.195 | 0.005 | 0.162 | — |
| chr22_37519540_G_C | chr22:37519540 | -0.191 | -0.088 | -0.345 | — |
| chr22_37560513_G_A | chr22:37560513 | 0.089 | 0.057 | 0.345 | — |
| chr22_37519469_G_A | chr22:37519469 | 0.068 | 0.093 | 0.342 | — |
| chr22_37519568_C_G | chr22:37519568 | -0.149 | -0.086 | -0.342 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.