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GPS2
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near GPS2
chr17:7,212,660..7,415,360, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr17_7215037_T_C | chr17:7215037 | 0.684 | 0.354 | 0.494 | — |
| chr17_7215048_G_T | chr17:7215048 | -0.610 | -0.189 | -0.539 | — |
| chr17_7215048_G_A | chr17:7215048 | -0.607 | -0.203 | -0.629 | — |
| chr17_7214768_A_G | chr17:7214768 | -0.194 | -0.462 | -1.000 | 0.0013% |
| chr17_7215042_C_A | chr17:7215042 | -0.572 | -0.205 | -0.629 | <0.001% |
| chr17_7215048_G_C | chr17:7215048 | -0.570 | -0.204 | -0.388 | — |
| chr17_7215038_G_C | chr17:7215038 | -0.549 | -0.145 | -0.618 | — |
| chr17_7215047_A_T | chr17:7215047 | 0.541 | 0.225 | 0.365 | — |
| chr17_7215038_G_A | chr17:7215038 | -0.520 | -0.117 | -0.567 | 0.0013% |
| chr17_7215046_C_A | chr17:7215046 | -0.495 | -0.209 | -0.612 | — |
| chr17_7215040_C_T | chr17:7215040 | -0.490 | -0.254 | -0.494 | — |
| chr17_7215042_C_G | chr17:7215042 | -0.485 | -0.219 | -0.494 | — |
| chr17_7214286_G_T | chr17:7214286 | 0.602 | 0.208 | 0.444 | 0.0013% |
| chr17_7215040_C_G | chr17:7215040 | -0.474 | -0.212 | -0.337 | — |
| chr17_7215044_T_A | chr17:7215044 | -0.474 | -0.194 | -0.444 | — |
| chr17_7215040_C_A | chr17:7215040 | -0.467 | -0.180 | -0.483 | — |
| chr17_7215039_C_G | chr17:7215039 | -0.464 | -0.198 | -0.545 | — |
| chr17_7215044_T_C | chr17:7215044 | -0.452 | -0.189 | -0.360 | 0.0020% |
| chr17_7215044_T_G | chr17:7215044 | -0.425 | -0.191 | -0.292 | — |
| chr17_7214951_A_T | chr17:7214951 | 0.090 | 0.078 | 0.713 | — |
| chr17_7215038_G_T | chr17:7215038 | -0.416 | -0.146 | -0.421 | — |
| chr17_7215039_C_T | chr17:7215039 | -0.405 | -0.168 | -0.534 | — |
| chr17_7214785_C_G | chr17:7214785 | 0.279 | -0.060 | 0.674 | — |
| chr17_7215049_G_C | chr17:7215049 | -0.389 | -0.122 | -0.382 | — |
| chr17_7215043_C_A | chr17:7215043 | -0.385 | -0.162 | -0.551 | — |
| chr17_7215043_C_T | chr17:7215043 | -0.385 | -0.149 | -0.596 | — |
| chr17_7215050_C_G | chr17:7215050 | -0.384 | -0.074 | -0.219 | — |
| chr17_7214782_A_C | chr17:7214782 | 0.374 | 0.071 | 0.337 | — |
| chr17_7215045_G_C | chr17:7215045 | -0.369 | -0.190 | -0.539 | — |
| chr17_7214781_G_T | chr17:7214781 | 0.361 | 0.078 | 0.371 | — |
| chr17_7214783_T_A | chr17:7214783 | 0.357 | 0.068 | 0.326 | — |
| chr17_7214445_C_T | chr17:7214445 | 0.379 | 0.278 | 0.693 | <0.001% |
| chr17_7215049_G_A | chr17:7215049 | -0.338 | -0.118 | -0.393 | — |
| chr17_7214784_G_A | chr17:7214784 | 0.333 | 0.045 | 0.258 | — |
| chr17_7214781_G_A | chr17:7214781 | 0.331 | 0.081 | 0.416 | — |
| chr17_7215003_A_C | chr17:7215003 | 0.331 | 0.107 | 0.225 | — |
| chr17_7215039_C_A | chr17:7215039 | -0.326 | -0.131 | -0.393 | — |
| chr17_7215047_A_G | chr17:7215047 | -0.325 | -0.150 | -0.191 | — |
| chr17_7214783_T_C | chr17:7214783 | 0.315 | 0.071 | 0.404 | — |
| chr17_7215043_C_G | chr17:7215043 | -0.313 | -0.157 | -0.337 | — |
| chr17_7214783_T_G | chr17:7214783 | 0.298 | 0.035 | 0.393 | — |
| chr17_7215049_G_T | chr17:7215049 | -0.297 | -0.068 | -0.298 | — |
| chr17_7214487_C_T | chr17:7214487 | -0.371 | 0.115 | -0.131 | 0.0020% |
| chr17_7214287_G_A | chr17:7214287 | 0.357 | 0.169 | 0.275 | <0.001% |
| chr17_7214830_C_G | chr17:7214830 | 0.128 | 0.247 | 0.483 | — |
| chr17_7215020_G_C | chr17:7215020 | 0.282 | 0.097 | 0.343 | — |
| chr17_7214781_G_C | chr17:7214781 | 0.275 | 0.108 | 0.449 | <0.001% |
| chr17_7214138_G_A | chr17:7214138 | -0.274 | -0.243 | -0.542 | 0.0013% |
| chr17_7214786_T_C | chr17:7214786 | 0.175 | -0.005 | 0.461 | — |
| chr17_7214438_C_A | chr17:7214438 | -0.206 | -0.208 | -0.523 | <0.001% |
| chr17_7215041_C_T | chr17:7215041 | -0.261 | -0.194 | -0.354 | — |
| chr17_7215045_G_T | chr17:7215045 | -0.259 | -0.132 | -0.393 | — |
| chr17_7214762_G_T | chr17:7214762 | 0.153 | 0.134 | 0.510 | <0.001% |
| chr17_7214642_C_G | chr17:7214642 | -0.012 | -0.013 | 0.497 | 0.0020% |
| chr17_7214763_G_A | chr17:7214763 | 0.175 | 0.112 | 0.497 | <0.001% |
| chr17_7215046_C_T | chr17:7215046 | -0.249 | -0.098 | -0.247 | — |
| chr17_7215047_A_C | chr17:7215047 | 0.246 | 0.081 | 0.230 | — |
| chr17_7215034_A_C | chr17:7215034 | -0.239 | 0.016 | -0.208 | — |
| chr17_7214642_C_A | chr17:7214642 | -0.054 | 0.022 | 0.471 | <0.001% |
| chr17_7215037_T_G | chr17:7215037 | -0.236 | -0.074 | -0.292 | — |
| chr17_7214784_G_C | chr17:7214784 | 0.234 | 0.010 | 0.270 | — |
| chr17_7214779_G_C | chr17:7214779 | 0.231 | 0.081 | 0.281 | — |
| chr17_7214298_G_C | chr17:7214298 | -0.276 | -0.096 | -0.444 | <0.001% |
| chr17_7214782_A_T | chr17:7214782 | 0.223 | 0.098 | 0.202 | — |
| chr17_7214786_T_G | chr17:7214786 | 0.120 | 0.081 | 0.382 | — |
| chr17_7215041_C_G | chr17:7215041 | -0.223 | -0.217 | -0.197 | — |
| chr17_7214784_G_T | chr17:7214784 | 0.221 | 0.050 | 0.225 | — |
| chr17_7215023_A_G | chr17:7215023 | -0.215 | 0.030 | -0.056 | — |
| chr17_7214116_A_C | chr17:7214116 | -0.188 | -0.169 | -0.418 | 0.047% |
| chr17_7214951_A_C | chr17:7214951 | 0.115 | 0.053 | 0.360 | — |
| chr17_7215037_T_A | chr17:7215037 | -0.205 | -0.064 | -0.292 | — |
| chr17_7214721_T_G | chr17:7214721 | -0.087 | -0.121 | -0.405 | 0.016% |
| chr17_7214785_C_A | chr17:7214785 | 0.182 | 0.091 | 0.348 | — |
| chr17_7214318_G_A | chr17:7214318 | -0.252 | -0.134 | -0.379 | <0.001% |
| chr17_7214454_T_C | chr17:7214454 | -0.087 | -0.233 | -0.392 | <0.001% |
| chr17_7214642_C_T | chr17:7214642 | 0.016 | 0.054 | 0.392 | <0.001% |
| chr17_7214998_T_C | chr17:7214998 | -0.197 | 0.003 | -0.129 | — |
| chr17_7215030_A_G | chr17:7215030 | -0.197 | 0.003 | 0.022 | — |
| chr17_7214969_G_C | chr17:7214969 | 0.062 | 0.033 | 0.331 | — |
| chr17_7214567_C_G | chr17:7214567 | 0.239 | 0.099 | 0.052 | <0.001% |
| chr17_7214488_G_A | chr17:7214488 | -0.227 | -0.035 | -0.235 | <0.001% |
| chr17_7214786_T_A | chr17:7214786 | 0.179 | 0.010 | 0.213 | — |
| chr17_7214782_A_G | chr17:7214782 | 0.151 | 0.081 | 0.303 | — |
| chr17_7215024_A_G | chr17:7215024 | -0.177 | -0.008 | -0.022 | — |
| chr17_7214983_G_C | chr17:7214983 | -0.175 | -0.011 | -0.287 | — |
| chr17_7215020_G_A | chr17:7215020 | 0.175 | 0.052 | 0.034 | <0.001% |
| chr17_7214983_G_A | chr17:7214983 | -0.121 | -0.044 | -0.298 | — |
| chr17_7215026_C_G | chr17:7215026 | -0.172 | -0.052 | -0.174 | — |
| chr17_7215021_G_C | chr17:7215021 | 0.167 | 0.047 | 0.152 | — |
| chr17_7214788_A_C | chr17:7214788 | 0.102 | 0.050 | 0.281 | — |
| chr17_7214966_T_G | chr17:7214966 | 0.084 | 0.025 | 0.281 | — |
| chr17_7215022_G_T | chr17:7215022 | 0.164 | 0.073 | -0.034 | — |
| chr17_7215036_G_T | chr17:7215036 | -0.164 | 0.016 | -0.185 | — |
| chr17_7214166_C_T | chr17:7214166 | 0.198 | 0.089 | 0.065 | <0.001% |
| chr17_7214409_A_C | chr17:7214409 | -0.095 | -0.083 | -0.314 | <0.001% |
| chr17_7214475_G_T | chr17:7214475 | -0.175 | -0.019 | -0.314 | 0.0013% |
| chr17_7215051_T_C | chr17:7215051 | -0.154 | -0.053 | -0.112 | — |
| chr17_7214311_C_A | chr17:7214311 | -0.066 | -0.160 | -0.301 | <0.001% |
| chr17_7214759_C_T | chr17:7214759 | -0.132 | -0.073 | -0.301 | <0.001% |
| chr17_7214799_A_T | chr17:7214799 | 0.007 | -0.048 | 0.258 | — |
| chr17_7214882_A_G | chr17:7214882 | 0.062 | -0.005 | 0.258 | — |
| chr17_7215033_C_T | chr17:7215033 | -0.133 | 0.024 | -0.258 | — |
| chr17_7215020_G_T | chr17:7215020 | 0.149 | -0.013 | -0.051 | — |
| chr17_7215024_A_T | chr17:7215024 | -0.149 | -0.024 | -0.180 | — |
| chr17_7215026_C_T | chr17:7215026 | 0.149 | 0.068 | 0.062 | — |
| chr17_7214955_T_G | chr17:7214955 | 0.087 | 0.030 | 0.253 | — |
| chr17_7214968_G_C | chr17:7214968 | 0.133 | 0.020 | 0.253 | — |
| chr17_7214982_C_T | chr17:7214982 | -0.030 | 0.003 | -0.253 | — |
| chr17_7215051_T_G | chr17:7215051 | 0.146 | 0.064 | 0.197 | — |
| chr17_7214311_C_G | chr17:7214311 | -0.144 | -0.192 | -0.288 | <0.001% |
| chr17_7214799_A_G | chr17:7214799 | -0.003 | -0.058 | 0.247 | — |
| chr17_7214810_G_A | chr17:7214810 | -0.036 | -0.033 | 0.247 | — |
| chr17_7214950_A_C | chr17:7214950 | 0.046 | 0.071 | 0.247 | — |
| chr17_7214965_C_A | chr17:7214965 | -0.110 | 0.001 | -0.247 | — |
| chr17_7214974_T_G | chr17:7214974 | 0.057 | -0.008 | 0.247 | — |
| chr17_7214983_G_T | chr17:7214983 | -0.121 | -0.005 | -0.247 | — |
| chr17_7215028_G_C | chr17:7215028 | -0.026 | -0.035 | 0.247 | — |
| chr17_7215035_T_C | chr17:7215035 | -0.120 | -0.096 | 0.247 | — |
| chr17_7215045_G_A | chr17:7215045 | 0.144 | 0.057 | 0.039 | — |
| chr17_7214446_C_G | chr17:7214446 | -0.177 | -0.026 | 0.026 | <0.001% |
| chr17_7214785_C_T | chr17:7214785 | 0.141 | 0.038 | 0.146 | — |
| chr17_7214990_C_G | chr17:7214990 | 0.059 | -0.003 | 0.242 | <0.001% |
| chr17_7215012_A_G | chr17:7215012 | 0.141 | 0.083 | 0.213 | — |
| chr17_7215036_G_C | chr17:7215036 | 0.141 | 0.087 | -0.051 | — |
| chr17_7214390_A_T | chr17:7214390 | 0.175 | 0.096 | 0.222 | 0.0013% |
| chr17_7214966_T_C | chr17:7214966 | 0.108 | 0.020 | 0.236 | <0.001% |
| chr17_7214979_G_C | chr17:7214979 | -0.118 | -0.028 | -0.236 | — |
| chr17_7214979_G_T | chr17:7214979 | -0.102 | -0.019 | -0.236 | — |
| chr17_7214552_C_T | chr17:7214552 | 0.169 | 0.169 | 0.092 | 0.0013% |
| chr17_7214967_G_C | chr17:7214967 | 0.121 | 0.030 | 0.230 | — |
| chr17_7215034_A_G | chr17:7215034 | 0.133 | 0.101 | 0.006 | — |
| chr17_7214685_A_T | chr17:7214685 | 0.045 | -0.006 | 0.261 | <0.001% |
| chr17_7215042_C_T | chr17:7215042 | -0.131 | -0.086 | -0.169 | — |
| chr17_7214734_A_C | chr17:7214734 | 0.161 | 0.029 | 0.222 | 0.0020% |
| chr17_7214947_T_C | chr17:7214947 | 0.080 | 0.073 | 0.219 | — |
| chr17_7214951_A_G | chr17:7214951 | 0.072 | 0.045 | 0.219 | — |
| chr17_7214328_C_G | chr17:7214328 | -0.159 | -0.045 | -0.144 | 0.066% |
| chr17_7214971_A_G | chr17:7214971 | -0.126 | 0.009 | -0.152 | — |
| chr17_7215015_A_G | chr17:7215015 | 0.126 | 0.008 | 0.135 | — |
| chr17_7214351_G_T | chr17:7214351 | -0.157 | -0.077 | -0.026 | <0.001% |
| chr17_7214441_C_G | chr17:7214441 | 0.157 | -0.089 | 0.157 | <0.001% |
| chr17_7214686_G_A | chr17:7214686 | -0.012 | 0.141 | -0.248 | <0.001% |
| chr17_7214707_G_C | chr17:7214707 | 0.157 | -0.010 | 0.157 | <0.001% |
| chr17_7214788_A_G | chr17:7214788 | 0.087 | 0.015 | 0.213 | — |
| chr17_7214798_G_A | chr17:7214798 | 0.030 | -0.023 | 0.213 | — |
| chr17_7214799_A_C | chr17:7214799 | 0.026 | -0.065 | 0.213 | — |
| chr17_7214961_A_C | chr17:7214961 | 0.072 | 0.015 | 0.213 | — |
| chr17_7214979_G_A | chr17:7214979 | -0.082 | -0.025 | -0.213 | — |
| chr17_7215023_A_T | chr17:7215023 | -0.123 | 0.065 | -0.045 | — |
| chr17_7214350_G_C | chr17:7214350 | -0.153 | -0.093 | -0.105 | <0.001% |
| chr17_7214982_C_A | chr17:7214982 | -0.074 | -0.003 | -0.208 | — |
| chr17_7215031_G_T | chr17:7215031 | -0.093 | -0.053 | -0.208 | — |
| chr17_7215014_C_A | chr17:7215014 | -0.120 | -0.035 | -0.096 | — |
| chr17_7214131_A_T | chr17:7214131 | -0.089 | -0.016 | -0.235 | <0.001% |
| chr17_7214283_G_C | chr17:7214283 | 0.148 | 0.089 | 0.078 | <0.001% |
| chr17_7214294_C_A | chr17:7214294 | -0.076 | -0.016 | -0.235 | <0.001% |
| chr17_7214779_G_T | chr17:7214779 | 0.070 | 0.043 | 0.202 | — |
| chr17_7214780_A_C | chr17:7214780 | 0.105 | 0.068 | 0.202 | — |
| chr17_7214790_A_G | chr17:7214790 | 0.007 | -0.028 | 0.202 | — |
| chr17_7214809_A_C | chr17:7214809 | 0.020 | -0.023 | 0.202 | — |
| chr17_7214880_G_A | chr17:7214880 | -0.046 | -0.030 | -0.202 | — |
| chr17_7214942_A_C | chr17:7214942 | 0.067 | 0.048 | 0.202 | — |
| chr17_7214905_T_G | chr17:7214905 | 0.056 | 0.038 | 0.197 | — |
| chr17_7214953_A_C | chr17:7214953 | 0.054 | 0.020 | 0.197 | — |
| chr17_7214961_A_G | chr17:7214961 | 0.023 | 0.000 | 0.197 | — |
| chr17_7214978_C_T | chr17:7214978 | -0.107 | -0.028 | -0.197 | — |
| chr17_7215007_C_G | chr17:7215007 | 0.115 | -0.010 | 0.163 | — |
| chr17_7215011_C_G | chr17:7215011 | 0.115 | 0.068 | 0.163 | — |
| chr17_7214434_T_C | chr17:7214434 | 0.047 | -0.016 | -0.222 | 0.0013% |
| chr17_7214474_T_C | chr17:7214474 | -0.025 | -0.038 | -0.222 | <0.001% |
| chr17_7214629_G_A | chr17:7214629 | -0.140 | -0.118 | -0.222 | <0.001% |
| chr17_7214669_C_T | chr17:7214669 | 0.070 | 0.070 | 0.222 | 0.0033% |
| chr17_7214809_A_G | chr17:7214809 | -0.036 | -0.081 | 0.191 | — |
| chr17_7214853_G_C | chr17:7214853 | 0.111 | 0.033 | 0.157 | — |
| chr17_7214882_A_C | chr17:7214882 | 0.095 | 0.028 | 0.191 | <0.001% |
| chr17_7214916_C_A | chr17:7214916 | -0.048 | -0.030 | -0.191 | — |
| chr17_7214916_C_G | chr17:7214916 | -0.025 | -0.008 | -0.191 | — |
| chr17_7214963_A_C | chr17:7214963 | 0.021 | 0.010 | 0.191 | — |
| chr17_7214998_T_G | chr17:7214998 | 0.074 | 0.020 | 0.191 | — |
| chr17_7215013_G_T | chr17:7215013 | -0.111 | 0.021 | 0.034 | — |
| chr17_7215019_G_C | chr17:7215019 | 0.111 | -0.031 | 0.185 | — |
| chr17_7214972_G_C | chr17:7214972 | -0.110 | -0.003 | -0.146 | — |
| chr17_7214692_C_T | chr17:7214692 | 0.136 | 0.157 | -0.026 | <0.001% |
| chr17_7214699_C_T | chr17:7214699 | 0.136 | 0.083 | 0.183 | <0.001% |
| chr17_7214946_A_T | chr17:7214946 | -0.108 | -0.088 | -0.124 | — |
| chr17_7214957_A_G | chr17:7214957 | 0.080 | 0.033 | 0.185 | — |
| chr17_7215035_T_G | chr17:7215035 | 0.108 | 0.113 | -0.006 | — |
| chr17_7214934_A_C | chr17:7214934 | 0.107 | 0.058 | 0.146 | — |
| chr17_7214159_A_G | chr17:7214159 | 0.029 | 0.083 | 0.209 | <0.001% |
| chr17_7214719_C_G | chr17:7214719 | 0.124 | -0.141 | 0.209 | <0.001% |
| chr17_7214794_G_T | chr17:7214794 | -0.043 | -0.018 | -0.180 | — |
| chr17_7214795_A_C | chr17:7214795 | 0.105 | 0.008 | 0.112 | — |
| chr17_7214811_A_C | chr17:7214811 | -0.041 | -0.086 | 0.180 | — |
| chr17_7214811_A_T | chr17:7214811 | -0.041 | -0.055 | 0.180 | — |
| chr17_7214814_A_C | chr17:7214814 | 0.036 | -0.038 | 0.180 | — |
| chr17_7214838_T_C | chr17:7214838 | 0.023 | -0.065 | 0.180 | — |
| chr17_7214870_G_C | chr17:7214870 | 0.003 | -0.005 | 0.180 | — |
| chr17_7214957_A_C | chr17:7214957 | 0.082 | 0.008 | 0.180 | — |
| chr17_7214978_C_A | chr17:7214978 | -0.038 | -0.018 | -0.180 | — |
| chr17_7215036_G_A | chr17:7215036 | 0.105 | 0.067 | -0.084 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.