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HPCAL1
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near HPCAL1
chr2:10,202,903..10,527,617, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr2_10270730_C_A | chr2:10270730 | 0.772 | 0.166 | 1.000 | — |
| chr2_10270730_C_G | chr2:10270730 | 1.000 | 0.196 | 1.000 | — |
| chr2_10270730_C_T | chr2:10270730 | 0.939 | 0.212 | 1.000 | — |
| chr2_10270729_C_G | chr2:10270729 | 0.892 | 0.108 | 0.978 | — |
| chr2_10270729_C_A | chr2:10270729 | 0.736 | 0.209 | 0.831 | — |
| chr2_10270780_G_A | chr2:10270780 | 0.715 | 0.509 | 0.461 | — |
| chr2_10270732_G_C | chr2:10270732 | -0.633 | -0.327 | -0.719 | — |
| chr2_10270729_C_T | chr2:10270729 | 0.526 | 0.136 | 0.697 | — |
| chr2_10270780_G_T | chr2:10270780 | 0.456 | 0.401 | 0.517 | — |
| chr2_10270773_T_A | chr2:10270773 | -0.452 | -0.453 | -0.539 | — |
| chr2_10270753_G_A | chr2:10270753 | -0.448 | -0.325 | -0.629 | <0.001% |
| chr2_10270750_G_T | chr2:10270750 | -0.441 | -0.176 | -0.449 | — |
| chr2_10270776_G_T | chr2:10270776 | -0.392 | -0.335 | -0.573 | — |
| chr2_10270754_T_A | chr2:10270754 | 0.367 | 0.040 | 0.236 | — |
| chr2_10270742_G_C | chr2:10270742 | 0.366 | 0.146 | 0.607 | — |
| chr2_10270779_A_T | chr2:10270779 | -0.366 | -0.307 | -0.393 | — |
| chr2_10270732_G_T | chr2:10270732 | -0.361 | -0.159 | -0.371 | 0.0026% |
| chr2_10270749_G_A | chr2:10270749 | -0.359 | -0.174 | -0.337 | <0.001% |
| chr2_10270733_T_G | chr2:10270733 | -0.356 | -0.050 | -0.416 | — |
| chr2_10270750_G_C | chr2:10270750 | -0.131 | -0.093 | -0.607 | <0.001% |
| chr2_10270785_C_T | chr2:10270785 | -0.341 | -0.282 | -0.348 | 0.0013% |
| chr2_10270732_G_A | chr2:10270732 | -0.338 | -0.204 | -0.337 | 0.0059% |
| chr2_10270748_G_T | chr2:10270748 | -0.338 | -0.181 | -0.337 | — |
| chr2_10270750_G_A | chr2:10270750 | -0.325 | -0.189 | -0.371 | — |
| chr2_10270760_C_G | chr2:10270760 | -0.252 | -0.111 | -0.551 | — |
| chr2_10270776_G_A | chr2:10270776 | -0.321 | -0.264 | -0.539 | — |
| chr2_10270756_C_G | chr2:10270756 | -0.315 | -0.151 | -0.438 | — |
| chr2_10270752_G_T | chr2:10270752 | -0.303 | -0.219 | -0.292 | — |
| chr2_10270776_G_C | chr2:10270776 | -0.295 | -0.275 | -0.438 | — |
| chr2_10270749_G_T | chr2:10270749 | -0.277 | -0.126 | -0.213 | — |
| chr2_10270777_G_T | chr2:10270777 | -0.275 | -0.161 | -0.371 | — |
| chr2_10270784_C_T | chr2:10270784 | -0.274 | -0.227 | -0.315 | — |
| chr2_10270784_C_G | chr2:10270784 | -0.272 | -0.204 | -0.202 | — |
| chr2_10270742_G_T | chr2:10270742 | 0.270 | 0.375 | 0.449 | — |
| chr2_10270760_C_A | chr2:10270760 | -0.193 | -0.058 | -0.461 | — |
| chr2_10270736_G_C | chr2:10270736 | 0.266 | 0.128 | 0.416 | — |
| chr2_10270760_C_T | chr2:10270760 | -0.177 | -0.088 | -0.449 | — |
| chr2_10270749_G_C | chr2:10270749 | -0.259 | -0.156 | -0.169 | — |
| chr2_10270775_G_C | chr2:10270775 | -0.259 | -0.209 | -0.337 | — |
| chr2_10270731_C_A | chr2:10270731 | 0.256 | -0.020 | 0.416 | — |
| chr2_10270737_C_G | chr2:10270737 | 0.256 | 0.121 | 0.348 | — |
| chr2_10270781_T_A | chr2:10270781 | -0.251 | -0.259 | -0.202 | — |
| chr2_10270761_T_C | chr2:10270761 | 0.246 | 0.091 | 0.034 | — |
| chr2_10270743_C_T | chr2:10270743 | -0.208 | -0.101 | -0.416 | — |
| chr2_10270785_C_G | chr2:10270785 | -0.239 | -0.134 | -0.067 | — |
| chr2_10270740_G_C | chr2:10270740 | 0.236 | 0.005 | 0.135 | — |
| chr2_10270778_A_T | chr2:10270778 | -0.210 | -0.144 | -0.404 | — |
| chr2_10270748_G_C | chr2:10270748 | -0.233 | -0.141 | -0.270 | — |
| chr2_10270769_G_T | chr2:10270769 | -0.225 | -0.191 | -0.360 | — |
| chr2_10270743_C_G | chr2:10270743 | -0.208 | -0.151 | -0.382 | — |
| chr2_10270758_T_A | chr2:10270758 | -0.220 | -0.071 | -0.382 | — |
| chr2_10270752_G_A | chr2:10270752 | -0.221 | -0.136 | 0.022 | — |
| chr2_10270782_T_G | chr2:10270782 | -0.220 | -0.149 | -0.101 | — |
| chr2_10270783_C_G | chr2:10270783 | -0.215 | -0.189 | -0.112 | — |
| chr2_10270739_A_G | chr2:10270739 | 0.213 | 0.179 | 0.135 | — |
| chr2_10270756_C_A | chr2:10270756 | -0.213 | -0.076 | -0.270 | — |
| chr2_10270733_T_A | chr2:10270733 | -0.208 | -0.101 | -0.169 | — |
| chr2_10238363_G_C | chr2:10238363 | -0.030 | -0.052 | -0.354 | — |
| chr2_10270736_G_T | chr2:10270736 | 0.207 | 0.053 | 0.202 | 0.0033% |
| chr2_10270757_T_A | chr2:10270757 | -0.205 | -0.128 | -0.326 | — |
| chr2_10270758_T_C | chr2:10270758 | -0.202 | -0.073 | -0.315 | — |
| chr2_10270784_C_A | chr2:10270784 | -0.198 | -0.101 | -0.157 | — |
| chr2_10270744_A_G | chr2:10270744 | -0.041 | -0.103 | 0.337 | — |
| chr2_10270751_A_G | chr2:10270751 | -0.105 | 0.076 | -0.337 | — |
| chr2_10270754_T_G | chr2:10270754 | -0.034 | -0.058 | -0.337 | — |
| chr2_10270755_G_C | chr2:10270755 | -0.197 | -0.040 | -0.270 | <0.001% |
| chr2_10270772_G_T | chr2:10270772 | -0.197 | -0.212 | -0.157 | — |
| chr2_10270778_A_G | chr2:10270778 | -0.030 | 0.038 | -0.337 | — |
| chr2_10270738_G_A | chr2:10270738 | -0.190 | -0.073 | -0.191 | <0.001% |
| chr2_10270771_G_T | chr2:10270771 | -0.190 | -0.186 | -0.202 | <0.001% |
| chr2_10270774_T_C | chr2:10270774 | 0.110 | 0.305 | 0.315 | <0.001% |
| chr2_10270783_C_A | chr2:10270783 | -0.177 | -0.227 | -0.258 | — |
| chr2_10270751_A_C | chr2:10270751 | 0.175 | 0.101 | 0.225 | — |
| chr2_10270778_A_C | chr2:10270778 | -0.172 | -0.071 | -0.169 | — |
| chr2_10270745_G_T | chr2:10270745 | -0.169 | -0.030 | -0.191 | — |
| chr2_10270773_T_G | chr2:10270773 | -0.169 | -0.081 | -0.112 | — |
| chr2_10270785_C_A | chr2:10270785 | -0.167 | -0.098 | -0.101 | — |
| chr2_10270738_G_T | chr2:10270738 | -0.164 | -0.098 | -0.180 | — |
| chr2_10270774_T_G | chr2:10270774 | -0.105 | -0.045 | -0.281 | — |
| chr2_10270781_T_G | chr2:10270781 | -0.161 | -0.033 | -0.022 | — |
| chr2_10270783_C_T | chr2:10270783 | -0.161 | -0.091 | -0.180 | — |
| chr2_10270759_C_G | chr2:10270759 | -0.039 | -0.048 | -0.270 | — |
| chr2_10238354_G_T | chr2:10238354 | 0.010 | 0.024 | 0.264 | — |
| chr2_10270781_T_C | chr2:10270781 | -0.154 | -0.174 | -0.022 | — |
| chr2_10270782_T_A | chr2:10270782 | -0.154 | -0.123 | -0.225 | — |
| chr2_10270759_C_A | chr2:10270759 | 0.020 | -0.005 | -0.258 | — |
| chr2_10270759_C_T | chr2:10270759 | 0.007 | -0.028 | -0.258 | — |
| chr2_10270775_G_T | chr2:10270775 | -0.126 | -0.181 | -0.258 | — |
| chr2_10270771_G_A | chr2:10270771 | -0.148 | -0.202 | -0.079 | — |
| chr2_10270745_G_C | chr2:10270745 | -0.141 | 0.018 | -0.112 | — |
| chr2_10270770_A_C | chr2:10270770 | 0.141 | -0.126 | -0.090 | — |
| chr2_10270735_G_C | chr2:10270735 | 0.093 | -0.050 | 0.236 | — |
| chr2_10270748_G_A | chr2:10270748 | -0.138 | -0.045 | -0.191 | <0.001% |
| chr2_10270756_C_T | chr2:10270756 | -0.105 | -0.055 | -0.236 | — |
| chr2_10270765_C_A | chr2:10270765 | 0.136 | 0.176 | 0.191 | — |
| chr2_10270739_A_C | chr2:10270739 | 0.131 | 0.000 | 0.101 | — |
| chr2_10270758_T_G | chr2:10270758 | -0.095 | -0.050 | -0.225 | — |
| chr2_10270768_A_C | chr2:10270768 | -0.131 | -0.174 | -0.180 | — |
| chr2_10270782_T_C | chr2:10270782 | 0.072 | 0.083 | -0.225 | — |
| chr2_10270734_G_A | chr2:10270734 | -0.130 | -0.078 | -0.146 | — |
| chr2_10270734_G_C | chr2:10270734 | 0.130 | 0.055 | 0.202 | — |
| chr2_10238300_C_A | chr2:10238300 | 0.056 | 0.040 | -0.219 | — |
| chr2_10238330_G_T | chr2:10238330 | 0.077 | 0.062 | -0.219 | — |
| chr2_10270744_A_C | chr2:10270744 | 0.105 | 0.043 | 0.213 | — |
| chr2_10270757_T_C | chr2:10270757 | -0.125 | 0.000 | -0.157 | — |
| chr2_10270752_G_C | chr2:10270752 | -0.123 | -0.053 | -0.034 | — |
| chr2_10270739_A_T | chr2:10270739 | 0.120 | 0.073 | 0.146 | — |
| chr2_10270753_G_C | chr2:10270753 | -0.120 | -0.063 | -0.034 | — |
| chr2_10238368_T_C | chr2:10238368 | -0.018 | -0.016 | -0.202 | — |
| chr2_10270755_G_T | chr2:10270755 | -0.118 | -0.076 | -0.191 | — |
| chr2_10270772_G_A | chr2:10270772 | -0.116 | -0.237 | -0.169 | — |
| chr2_10270741_G_C | chr2:10270741 | 0.110 | -0.076 | -0.011 | — |
| chr2_10270779_A_G | chr2:10270779 | -0.110 | -0.040 | -0.146 | — |
| chr2_10270757_T_G | chr2:10270757 | -0.107 | 0.008 | -0.169 | — |
| chr2_10270736_G_A | chr2:10270736 | 0.067 | 0.020 | 0.180 | — |
| chr2_10270762_G_C | chr2:10270762 | 0.013 | -0.078 | -0.180 | — |
| chr2_10270762_G_T | chr2:10270762 | -0.072 | -0.073 | -0.180 | — |
| chr2_10270768_A_G | chr2:10270768 | 0.056 | 0.010 | 0.180 | — |
| chr2_10270768_A_T | chr2:10270768 | -0.005 | -0.103 | -0.180 | — |
| chr2_10270755_G_A | chr2:10270755 | -0.103 | 0.038 | -0.056 | — |
| chr2_10270764_G_T | chr2:10270764 | -0.102 | -0.038 | 0.011 | — |
| chr2_10270764_G_A | chr2:10270764 | -0.100 | -0.045 | -0.011 | — |
| chr2_10270765_C_G | chr2:10270765 | 0.085 | 0.307 | -0.124 | — |
| chr2_10270767_T_G | chr2:10270767 | 0.046 | 0.055 | 0.169 | — |
| chr2_10270770_A_T | chr2:10270770 | 0.020 | -0.123 | -0.169 | — |
| chr2_10270777_G_C | chr2:10270777 | -0.059 | -0.010 | -0.169 | — |
| chr2_10264189_G_C | chr2:10264189 | 0.057 | 0.090 | 0.166 | — |
| chr2_10270764_G_C | chr2:10270764 | -0.095 | -0.010 | -0.034 | <0.001% |
| chr2_10270737_C_T | chr2:10270737 | -0.093 | 0.013 | -0.146 | 0.022% |
| chr2_10270754_T_C | chr2:10270754 | 0.075 | -0.003 | 0.157 | — |
| chr2_10270765_C_T | chr2:10270765 | 0.092 | 0.184 | 0.011 | — |
| chr2_10270766_T_C | chr2:10270766 | -0.090 | 0.003 | 0.011 | — |
| chr2_10270772_G_C | chr2:10270772 | -0.090 | -0.093 | 0.011 | — |
| chr2_10238378_G_C | chr2:10238378 | 0.019 | 0.026 | 0.152 | — |
| chr2_10270735_G_A | chr2:10270735 | 0.089 | -0.003 | 0.146 | 0.0013% |
| chr2_10270747_A_C | chr2:10270747 | -0.087 | -0.045 | -0.090 | — |
| chr2_10270740_G_A | chr2:10270740 | -0.034 | -0.126 | -0.146 | — |
| chr2_10270775_G_A | chr2:10270775 | -0.085 | 0.043 | -0.067 | — |
| chr2_10270734_G_T | chr2:10270734 | -0.084 | -0.048 | -0.022 | — |
| chr2_10270763_G_T | chr2:10270763 | -0.084 | -0.156 | -0.135 | — |
| chr2_10270770_A_G | chr2:10270770 | -0.084 | -0.043 | -0.101 | — |
| chr2_10270753_G_T | chr2:10270753 | -0.082 | -0.088 | -0.090 | — |
| chr2_10238322_C_T | chr2:10238322 | -0.061 | -0.023 | 0.135 | — |
| chr2_10238379_A_T | chr2:10238379 | 0.070 | 0.043 | -0.135 | — |
| chr2_10270747_A_G | chr2:10270747 | -0.064 | 0.025 | -0.135 | — |
| chr2_10270767_T_C | chr2:10270767 | 0.079 | 0.111 | 0.101 | — |
| chr2_10238359_C_A | chr2:10238359 | 0.017 | 0.021 | 0.129 | — |
| chr2_10270779_A_C | chr2:10270779 | -0.075 | -0.015 | -0.090 | — |
| chr2_10270740_G_T | chr2:10270740 | -0.013 | -0.098 | -0.124 | — |
| chr2_10270741_G_T | chr2:10270741 | 0.043 | -0.108 | -0.124 | — |
| chr2_10270745_G_A | chr2:10270745 | 0.072 | 0.123 | 0.124 | — |
| chr2_10270777_G_A | chr2:10270777 | -0.072 | 0.040 | 0.000 | — |
| chr2_10270774_T_A | chr2:10270774 | -0.070 | -0.025 | -0.022 | — |
| chr2_10238296_C_G | chr2:10238296 | 0.028 | 0.019 | -0.118 | — |
| chr2_10238322_C_G | chr2:10238322 | -0.039 | -0.028 | 0.118 | — |
| chr2_10270741_G_A | chr2:10270741 | 0.069 | -0.088 | -0.079 | — |
| chr2_10270786_G_A | chr2:10270786 | 0.069 | 0.103 | 0.079 | 0.0026% |
| chr2_10270763_G_C | chr2:10270763 | -0.036 | -0.134 | -0.112 | — |
| chr2_10270731_C_G | chr2:10270731 | -0.041 | -0.196 | -0.034 | — |
| chr2_10270761_T_A | chr2:10270761 | 0.064 | 0.043 | -0.101 | — |
| chr2_10270744_A_T | chr2:10270744 | 0.062 | -0.015 | 0.045 | — |
| chr2_10270738_G_C | chr2:10270738 | -0.061 | -0.003 | 0.056 | — |
| chr2_10238325_G_T | chr2:10238325 | -0.007 | 0.020 | -0.101 | — |
| chr2_10238328_A_T | chr2:10238328 | -0.004 | 0.004 | 0.101 | — |
| chr2_10270731_C_T | chr2:10270731 | -0.013 | -0.128 | 0.101 | 0.197% |
| chr2_10270746_A_T | chr2:10270746 | -0.059 | -0.020 | -0.022 | — |
| chr2_10238292_C_A | chr2:10238292 | 0.024 | 0.009 | -0.096 | — |
| chr2_10238300_C_G | chr2:10238300 | 0.016 | 0.010 | -0.096 | — |
| chr2_10238318_G_A | chr2:10238318 | 0.016 | 0.006 | -0.096 | — |
| chr2_10238320_G_T | chr2:10238320 | 0.026 | 0.018 | -0.096 | — |
| chr2_10270743_C_A | chr2:10270743 | -0.033 | -0.169 | -0.090 | — |
| chr2_10270771_G_C | chr2:10270771 | -0.049 | -0.164 | 0.022 | — |
| chr2_10238299_G_A | chr2:10238299 | 0.004 | 0.001 | -0.090 | — |
| chr2_10238318_G_C | chr2:10238318 | -0.002 | -0.003 | 0.090 | — |
| chr2_10238328_A_C | chr2:10238328 | -0.007 | 0.000 | 0.090 | — |
| chr2_10238360_A_T | chr2:10238360 | -0.004 | 0.014 | 0.090 | — |
| chr2_10238361_C_G | chr2:10238361 | 0.000 | 0.014 | 0.090 | — |
| chr2_10238362_C_G | chr2:10238362 | 0.006 | 0.016 | 0.090 | — |
| chr2_10238377_G_A | chr2:10238377 | 0.000 | -0.001 | -0.090 | — |
| chr2_10238415_C_A | chr2:10238415 | -0.018 | 0.004 | -0.090 | — |
| chr2_10270763_G_A | chr2:10270763 | -0.051 | -0.134 | -0.079 | — |
| chr2_10238344_C_G | chr2:10238344 | 0.050 | 0.026 | -0.006 | — |
| chr2_10264154_C_G | chr2:10264154 | 0.014 | 0.028 | 0.085 | — |
| chr2_10238290_G_T | chr2:10238290 | 0.011 | 0.015 | -0.084 | — |
| chr2_10238314_C_G | chr2:10238314 | -0.002 | -0.005 | 0.084 | — |
| chr2_10238360_A_C | chr2:10238360 | -0.005 | -0.009 | -0.084 | — |
| chr2_10238361_C_A | chr2:10238361 | -0.001 | 0.015 | 0.084 | — |
| chr2_10238362_C_A | chr2:10238362 | 0.007 | 0.016 | 0.084 | <0.001% |
| chr2_10238365_C_G | chr2:10238365 | 0.015 | 0.000 | 0.084 | — |
| chr2_10238386_T_C | chr2:10238386 | 0.012 | 0.004 | 0.084 | — |
| chr2_10238302_G_A | chr2:10238302 | 0.015 | 0.015 | -0.079 | — |
| chr2_10238320_G_A | chr2:10238320 | 0.027 | 0.018 | -0.079 | — |
| chr2_10238386_T_A | chr2:10238386 | -0.022 | -0.008 | 0.079 | — |
| chr2_10238386_T_G | chr2:10238386 | -0.015 | -0.011 | 0.079 | — |
| chr2_10270746_A_C | chr2:10270746 | 0.007 | 0.020 | 0.079 | — |
| chr2_10270746_A_G | chr2:10270746 | 0.044 | 0.010 | 0.079 | — |
| chr2_10270766_T_G | chr2:10270766 | -0.008 | 0.050 | -0.079 | — |
| chr2_10270773_T_C | chr2:10270773 | 0.016 | -0.055 | 0.079 | — |
| chr2_10270742_G_A | chr2:10270742 | 0.044 | -0.030 | 0.056 | — |
| chr2_10270769_G_A | chr2:10270769 | 0.044 | 0.106 | 0.067 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.