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LINC00115

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near LINC00115

chr1:726,205..927,522, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr1_827416_G_A	chr1:827416	1.000	1.000	1.000	0.0039%
chr1_779097_G_A	chr1:779097	0.172	0.176	1.000	0.0020%
chr1_826949_T_G	chr1:826949	1.000	0.435	1.000	<0.001%
chr1_827518_G_C	chr1:827518	-0.077	-0.537	-1.000	0.0033%
chr1_779093_G_A	chr1:779093	0.198	0.150	1.000	0.0020%
chr1_779098_T_G	chr1:779098	0.186	0.176	1.000	0.0013%
chr1_827624_G_A	chr1:827624	0.386	0.552	1.000	<0.001%
chr1_778809_A_T	chr1:778809	-0.459	-0.169	-1.000	0.0020%
chr1_827623_G_C	chr1:827623	0.286	0.483	1.000	<0.001%
chr1_827589_G_C	chr1:827589	0.461	0.503	1.000	0.034%
chr1_827627_G_C	chr1:827627	0.194	0.468	1.000	0.0033%
chr1_827587_G_A	chr1:827587	0.375	0.442	1.000	0.0014%
chr1_827606_G_A	chr1:827606	-0.152	0.756	1.000	0.0026%
chr1_778704_G_T	chr1:778704	-0.657	-0.406	-1.000	<0.001%
chr1_827190_A_G	chr1:827190	0.119	0.131	1.000	<0.001%
chr1_827589_G_T	chr1:827589	0.410	0.442	1.000	<0.001%
chr1_827711_G_A	chr1:827711	0.180	0.310	1.000	2.03%
chr1_858906_A_G	chr1:858906	-0.635	-0.144	-0.657	0.0020%
chr1_827590_G_T	chr1:827590	0.406	0.522	1.000	<0.001%
chr1_778729_T_C	chr1:778729	-0.614	-0.297	-0.451	<0.001%
chr1_778664_G_T	chr1:778664	0.599	-0.003	0.601	<0.001%
chr1_827723_A_C	chr1:827723	0.247	0.259	0.938	0.0013%
chr1_858756_G_C	chr1:858756	0.434	0.412	0.935	0.013%
chr1_778813_G_A	chr1:778813	-0.576	-0.134	-0.301	<0.001%
chr1_827519_G_T	chr1:827519	0.089	-0.161	-0.895	<0.001%
chr1_827536_G_A	chr1:827536	-0.024	0.105	0.895	<0.001%
chr1_827606_G_C	chr1:827606	-0.560	0.503	0.529	<0.001%
chr1_827838_G_T	chr1:827838	0.039	0.190	0.886	<0.001%
chr1_827408_G_C	chr1:827408	0.543	0.246	0.484	<0.001%
chr1_778802_G_A	chr1:778802	-0.154	-0.083	-0.856	0.0033%
chr1_778782_A_T	chr1:778782	-0.538	-0.022	-0.170	<0.001%
chr1_858817_G_A	chr1:858817	-0.511	-0.419	-0.824	<0.001%
chr1_778656_A_G	chr1:778656	-0.487	-0.208	-0.817	0.0028%
chr1_827697_C_T	chr1:827697	0.240	0.228	0.796	0.0026%
chr1_827493_C_G	chr1:827493	-0.500	-0.450	-0.706	0.021%
chr1_827361_C_T	chr1:827361	-0.248	-0.153	-0.784	0.011%
chr1_804945_A_C	chr1:804945	0.171	0.278	0.778	0.0013%
chr1_827559_T_C	chr1:827559	-0.150	-0.128	-0.778	0.0029%
chr1_778812_G_A	chr1:778812	0.171	0.016	-0.765	0.0013%
chr1_778692_G_C	chr1:778692	-0.481	0.035	-0.438	<0.001%
chr1_858860_G_A	chr1:858860	-0.414	-0.406	-0.761	<0.001%
chr1_827337_T_G	chr1:827337	-0.138	-0.291	-0.758	<0.001%
chr1_778848_C_T	chr1:778848	-0.277	-0.236	-0.752	0.0013%
chr1_858120_G_C	chr1:858120	0.428	0.438	0.752	<0.001%
chr1_827411_C_G	chr1:827411	0.472	0.179	0.444	<0.001%
chr1_827698_G_A	chr1:827698	0.001	0.069	0.729	<0.001%
chr1_778790_G_T	chr1:778790	-0.456	-0.256	-0.582	0.0013%
chr1_827339_C_T	chr1:827339	-0.099	-0.259	-0.719	0.0013%
chr1_827583_A_T	chr1:827583	0.061	0.168	0.719	<0.001%
chr1_778715_A_C	chr1:778715	-0.452	-0.099	-0.105	<0.001%
chr1_827443_T_C	chr1:827443	0.151	0.058	0.706	0.0059%
chr1_858753_C_T	chr1:858753	0.136	0.351	0.699	0.0020%
chr1_827646_G_C	chr1:827646	-0.260	-0.090	-0.691	0.0013%
chr1_778801_C_T	chr1:778801	-0.156	0.006	-0.686	<0.001%
chr1_778684_C_A	chr1:778684	-0.431	-0.262	-0.549	0.0013%
chr1_827788_T_G	chr1:827788	0.169	0.091	0.680	0.0013%
chr1_827478_A_C	chr1:827478	-0.423	-0.514	-0.065	0.0013%
chr1_778902_A_G	chr1:778902	0.404	0.038	-0.301	<0.001%
chr1_827496_T_C	chr1:827496	-0.395	-0.428	-0.444	0.014%
chr1_827602_C_G	chr1:827602	-0.151	-0.296	-0.611	0.0069%
chr1_858665_C_A	chr1:858665	-0.297	-0.236	-0.608	<0.001%
chr1_827492_A_G	chr1:827492	-0.378	-0.367	-0.288	<0.001%
chr1_827678_T_G	chr1:827678	-0.292	-0.149	-0.598	0.0013%
chr1_858901_T_C	chr1:858901	0.307	0.364	0.598	<0.001%
chr1_779080_C_T	chr1:779080	0.089	0.188	0.595	<0.001%
chr1_778901_G_A	chr1:778901	-0.375	-0.089	-0.431	0.0033%
chr1_827470_C_G	chr1:827470	0.373	0.217	0.275	<0.001%
chr1_778859_C_T	chr1:778859	-0.363	-0.073	-0.588	<0.001%
chr1_827295_C_T	chr1:827295	0.073	0.166	0.588	<0.001%
chr1_827475_G_A	chr1:827475	-0.353	-0.288	-0.588	0.037%
chr1_827553_C_G	chr1:827553	0.031	-0.168	-0.585	<0.001%
chr1_778709_C_A	chr1:778709	-0.267	-0.121	-0.582	0.0013%
chr1_858837_G_A	chr1:858837	-0.342	-0.217	-0.578	<0.001%
chr1_779007_C_A	chr1:779007	0.108	0.163	0.569	0.0079%
chr1_827598_G_C	chr1:827598	0.262	0.288	0.565	<0.001%
chr1_827502_C_G	chr1:827502	-0.339	-0.185	-0.562	0.0013%
chr1_858881_A_G	chr1:858881	0.322	0.217	0.549	0.0026%
chr1_858931_G_A	chr1:858931	0.346	0.304	0.310	<0.001%
chr1_827490_G_T	chr1:827490	0.345	0.550	0.314	<0.001%
chr1_827661_G_T	chr1:827661	0.151	0.123	0.547	<0.001%
chr1_778419_C_T	chr1:778419	-0.124	-0.131	-0.546	<0.001%
chr1_778819_G_T	chr1:778819	-0.344	0.000	-0.052	<0.001%
chr1_827671_C_T	chr1:827671	0.181	0.126	0.546	0.0013%
chr1_778599_C_G	chr1:778599	0.212	0.086	0.542	0.015%
chr1_778804_T_C	chr1:778804	0.340	0.086	0.046	<0.001%
chr1_827473_A_T	chr1:827473	-0.340	-0.248	-0.431	<0.001%
chr1_827534_T_G	chr1:827534	-0.170	-0.110	-0.536	0.0027%
chr1_778619_A_G	chr1:778619	0.065	0.064	0.529	<0.001%
chr1_827476_G_A	chr1:827476	-0.334	-0.256	-0.523	1.47%
chr1_858855_T_C	chr1:858855	-0.333	-0.265	-0.451	0.018%
chr1_827506_T_G	chr1:827506	-0.330	-0.225	-0.209	2.52%
chr1_778719_C_G	chr1:778719	-0.327	-0.026	0.007	<0.001%
chr1_778693_T_C	chr1:778693	-0.321	0.013	-0.105	0.0013%
chr1_779139_C_T	chr1:779139	0.040	0.006	0.507	<0.001%
chr1_827364_C_T	chr1:827364	0.131	0.176	0.497	0.0072%
chr1_827536_G_C	chr1:827536	0.312	0.075	0.333	<0.001%
chr1_778683_C_T	chr1:778683	-0.284	-0.080	-0.490	<0.001%
chr1_826783_C_T	chr1:826783	-0.208	-0.188	-0.490	<0.001%
chr1_858441_C_G	chr1:858441	0.216	0.300	0.490	<0.001%
chr1_858809_G_A	chr1:858809	-0.306	-0.323	-0.461	<0.001%
chr1_827252_T_A	chr1:827252	0.055	0.102	0.484	74.9%
chr1_778715_A_G	chr1:778715	-0.301	-0.070	0.261	0.0020%
chr1_778811_T_A	chr1:778811	-0.299	0.144	0.346	0.0020%
chr1_778918_C_A	chr1:778918	-0.298	-0.038	-0.320	0.0026%
chr1_778597_C_A	chr1:778597	-0.105	-0.048	-0.471	0.020%
chr1_858807_G_A	chr1:858807	-0.295	0.010	-0.471	0.016%
chr1_858930_C_T	chr1:858930	-0.292	-0.128	-0.346	0.0020%
chr1_827612_T_G	chr1:827612	-0.146	-0.080	-0.461	0.0014%
chr1_827456_T_G	chr1:827456	0.282	0.083	0.013	<0.001%
chr1_778913_G_A	chr1:778913	-0.281	-0.067	-0.399	<0.001%
chr1_778724_G_C	chr1:778724	-0.280	-0.163	-0.222	<0.001%
chr1_858851_G_A	chr1:858851	-0.223	-0.182	-0.441	0.0020%
chr1_827448_G_A	chr1:827448	0.277	0.035	0.261	0.014%
chr1_778897_C_A	chr1:778897	-0.213	0.022	-0.438	0.463%
chr1_827568_G_A	chr1:827568	0.200	0.235	0.438	<0.001%
chr1_827477_C_A	chr1:827477	-0.273	-0.363	-0.418	0.0020%
chr1_827362_G_C	chr1:827362	0.231	0.428	0.431	<0.001%
chr1_827418_G_A	chr1:827418	0.082	0.080	0.431	<0.001%
chr1_827567_G_T	chr1:827567	0.219	0.203	0.431	0.358%
chr1_827670_C_G	chr1:827670	-0.119	-0.074	-0.431	0.0013%
chr1_827710_C_G	chr1:827710	-0.271	-0.184	-0.395	<0.001%
chr1_827599_G_A	chr1:827599	0.178	0.201	0.428	<0.001%
chr1_778706_A_T	chr1:778706	-0.256	-0.195	-0.425	0.0027%
chr1_778822_C_T	chr1:778822	-0.268	0.010	-0.379	<0.001%
chr1_778597_C_T	chr1:778597	-0.044	-0.032	-0.418	1.84%
chr1_827880_G_A	chr1:827880	0.078	0.091	0.417	<0.001%
chr1_827506_T_A	chr1:827506	-0.262	-0.181	0.105	<0.001%
chr1_778682_C_T	chr1:778682	-0.261	0.013	-0.281	<0.001%
chr1_858803_C_T	chr1:858803	-0.261	-0.067	-0.301	0.0013%
chr1_778707_C_T	chr1:778707	-0.225	-0.144	-0.412	0.0026%
chr1_778841_G_C	chr1:778841	0.007	-0.220	-0.405	<0.001%
chr1_827423_G_A	chr1:827423	-0.181	-0.163	-0.405	<0.001%
chr1_827504_G_C	chr1:827504	-0.256	-0.211	-0.196	<0.001%
chr1_827539_C_T	chr1:827539	0.107	0.024	0.405	<0.001%
chr1_827569_G_A	chr1:827569	0.129	0.136	0.405	<0.001%
chr1_827405_G_A	chr1:827405	0.254	0.157	0.222	0.0013%
chr1_827504_G_A	chr1:827504	-0.254	-0.217	-0.288	<0.001%
chr1_827660_C_T	chr1:827660	-0.012	0.037	0.399	0.0020%
chr1_858426_T_G	chr1:858426	0.252	0.457	0.183	0.0014%
chr1_858843_G_C	chr1:858843	0.249	0.141	0.278	<0.001%
chr1_778827_T_A	chr1:778827	-0.220	0.019	-0.392	<0.001%
chr1_827257_G_T	chr1:827257	0.049	0.006	0.392	0.189%
chr1_827840_A_G	chr1:827840	-0.084	-0.061	-0.392	<0.001%
chr1_778724_G_A	chr1:778724	-0.244	-0.077	-0.111	<0.001%
chr1_778875_G_C	chr1:778875	-0.240	-0.073	-0.320	<0.001%
chr1_778386_G_C	chr1:778386	-0.058	-0.118	-0.379	0.0020%
chr1_778613_T_C	chr1:778613	0.125	-0.032	0.379	<0.001%
chr1_828109_G_C	chr1:828109	0.053	0.083	0.379	0.0014%
chr1_858497_G_A	chr1:858497	-0.210	-0.121	-0.379	0.0013%
chr1_858745_G_A	chr1:858745	-0.239	-0.182	-0.340	<0.001%
chr1_827637_C_T	chr1:827637	0.234	0.292	0.183	<0.001%
chr1_827661_G_C	chr1:827661	0.155	0.096	0.371	<0.001%
chr1_827675_C_A	chr1:827675	-0.059	-0.088	-0.369	0.0013%
chr1_778677_A_C	chr1:778677	0.155	-0.118	0.366	0.018%
chr1_827166_T_C	chr1:827166	0.062	0.029	0.366	0.0013%
chr1_827463_C_T	chr1:827463	-0.188	-0.185	-0.366	0.396%
chr1_778725_G_A	chr1:778725	-0.228	-0.169	-0.137	<0.001%
chr1_778624_A_G	chr1:778624	0.127	0.080	0.359	0.0013%
chr1_826927_G_A	chr1:826927	0.162	0.010	0.359	0.471%
chr1_827643_C_G	chr1:827643	-0.226	-0.157	-0.333	<0.001%
chr1_858760_A_T	chr1:858760	0.224	0.121	0.216	<0.001%
chr1_827512_G_C	chr1:827512	0.188	0.144	-0.353	<0.001%
chr1_858781_C_T	chr1:858781	-0.159	-0.137	-0.343	<0.001%
chr1_778616_T_C	chr1:778616	0.108	0.157	0.340	0.0013%
chr1_778797_C_T	chr1:778797	-0.112	-0.067	-0.340	<0.001%
chr1_779019_C_T	chr1:779019	-0.031	-0.064	-0.340	0.0026%
chr1_827065_A_G	chr1:827065	0.053	0.022	0.340	<0.001%
chr1_827656_C_T	chr1:827656	0.090	0.064	0.335	0.0020%
chr1_778575_G_A	chr1:778575	-0.156	-0.054	-0.333	<0.001%
chr1_858792_G_A	chr1:858792	0.209	0.173	0.268	0.386%
chr1_858752_G_T	chr1:858752	-0.187	-0.161	-0.330	<0.001%
chr1_827222_A_C	chr1:827222	0.069	0.067	0.327	0.0053%
chr1_827377_G_T	chr1:827377	0.174	0.137	0.327	<0.001%
chr1_827527_A_G	chr1:827527	0.206	0.137	0.222	<0.001%
chr1_827549_G_C	chr1:827549	0.083	0.165	0.327	0.0039%
chr1_827812_G_A	chr1:827812	0.086	0.075	0.327	<0.001%
chr1_778768_C_G	chr1:778768	0.205	0.096	0.072	<0.001%
chr1_827435_G_A	chr1:827435	-0.204	-0.128	-0.039	3.07%
chr1_827670_C_T	chr1:827670	-0.085	-0.049	-0.324	0.0059%
chr1_804986_G_A	chr1:804986	-0.013	-0.236	-0.321	<0.001%
chr1_778639_A_G	chr1:778639	-0.128	-0.061	-0.320	12.8%
chr1_778765_G_T	chr1:778765	-0.202	-0.067	-0.059	<0.001%
chr1_778701_G_A	chr1:778701	0.201	0.109	0.150	<0.001%
chr1_827297_G_A	chr1:827297	-0.057	-0.128	-0.314	<0.001%
chr1_827826_G_A	chr1:827826	-0.076	-0.042	-0.314	0.0020%
chr1_858647_G_A	chr1:858647	0.157	0.137	0.314	0.542%
chr1_778890_T_G	chr1:778890	-0.194	-0.006	-0.294	<0.001%
chr1_826950_G_T	chr1:826950	-0.059	-0.067	-0.307	4.37%
chr1_778640_A_C	chr1:778640	-0.193	-0.150	-0.242	<0.001%
chr1_778802_G_C	chr1:778802	-0.192	-0.016	0.105	0.0013%
chr1_858812_C_T	chr1:858812	0.192	0.121	0.265	0.0013%
chr1_858876_A_G	chr1:858876	0.086	0.128	0.304	<0.001%
chr1_778426_G_A	chr1:778426	-0.086	-0.058	-0.301	0.0014%
chr1_778820_G_A	chr1:778820	-0.068	0.029	-0.301	<0.001%
chr1_778840_T_G	chr1:778840	0.190	-0.201	-0.203	<0.001%
chr1_827000_C_A	chr1:827000	0.030	0.080	-0.301	<0.001%
chr1_827092_C_T	chr1:827092	-0.005	-0.048	-0.301	18.7%
chr1_827231_G_A	chr1:827231	-0.063	-0.022	-0.301	0.0013%
chr1_827426_C_T	chr1:827426	-0.168	-0.208	-0.301	0.0059%
chr1_778764_G_T	chr1:778764	-0.189	0.026	0.013	<0.001%

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.