LINC01342

Scored variants near LINC01342

chr1:1,037,016..1,244,054, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr1_1059393_C_T	chr1:1059393	0.373	0.275	1.000	<0.001%
chr1_1059615_T_A	chr1:1059615	-1.000	-0.235	-1.000	<0.001%
chr1_1038127_C_G	chr1:1038127	-0.904	-1.000	-1.000	0.0013%
chr1_1059413_C_A	chr1:1059413	0.223	0.281	1.000	0.0013%
chr1_1038126_A_G	chr1:1038126	-0.767	-1.000	-1.000	0.0020%
chr1_1059395_C_T	chr1:1059395	0.184	0.173	1.000	0.0033%
chr1_1058362_C_G	chr1:1058362	-0.036	0.474	1.000	0.0013%
chr1_1059397_C_A	chr1:1059397	0.256	0.165	1.000	0.014%
chr1_1038100_G_A	chr1:1038100	-0.596	-1.000	-1.000	<0.001%
chr1_1038134_C_G	chr1:1038134	-0.574	-0.930	-0.993	<0.001%
chr1_1059614_C_A	chr1:1059614	-0.522	-0.181	-0.993	0.0013%
chr1_1058486_T_A	chr1:1058486	-0.502	-0.958	-0.987	<0.001%
chr1_1058485_G_A	chr1:1058485	-0.408	-0.794	-0.980	0.0013%
chr1_1059389_C_T	chr1:1059389	0.023	0.217	0.967	<0.001%
chr1_1058247_G_C	chr1:1058247	0.467	1.000	0.928	0.0039%
chr1_1059632_G_T	chr1:1059632	-0.577	0.254	-0.379	0.030%
chr1_1058930_G_C	chr1:1058930	0.048	-0.115	0.807	—
chr1_1059602_C_T	chr1:1059602	-0.541	-0.065	-0.510	<0.001%
chr1_1059413_C_T	chr1:1059413	0.101	0.200	0.850	0.423%
chr1_1038064_G_A	chr1:1038064	0.528	0.808	0.654	<0.001%
chr1_1038182_C_A	chr1:1038182	-0.526	-0.834	-0.745	0.0013%
chr1_1058523_A_G	chr1:1058523	-0.440	-0.843	-0.797	0.0013%
chr1_1037801_C_T	chr1:1037801	-0.426	-0.423	-0.765	<0.001%
chr1_1058424_A_G	chr1:1058424	-0.332	-0.526	-0.758	0.0026%
chr1_1058753_G_T	chr1:1058753	0.074	0.112	0.745	<0.001%
chr1_1059314_C_G	chr1:1059314	0.175	0.091	0.745	0.0033%
chr1_1038119_C_T	chr1:1038119	-0.462	-0.955	-0.706	<0.001%
chr1_1059609_G_A	chr1:1059609	-0.459	-0.072	-0.732	<0.001%
chr1_1058753_G_A	chr1:1058753	0.047	0.105	0.719	<0.001%
chr1_1059384_C_G	chr1:1059384	0.225	0.123	0.719	<0.001%
chr1_1058522_C_T	chr1:1058522	-0.436	-0.920	-0.706	<0.001%
chr1_1059638_C_G	chr1:1059638	-0.439	-0.032	-0.314	0.0013%
chr1_1058484_C_A	chr1:1058484	-0.359	-0.527	-0.693	0.0026%
chr1_1058450_C_A	chr1:1058450	0.432	0.498	0.562	<0.001%
chr1_1058752_G_A	chr1:1058752	0.047	0.096	0.680	0.0013%
chr1_1038061_G_C	chr1:1038061	0.423	0.668	0.523	<0.001%
chr1_1038103_G_A	chr1:1038103	-0.419	-0.783	-0.667	<0.001%
chr1_1038179_C_A	chr1:1038179	-0.421	-0.735	-0.654	<0.001%
chr1_1059610_G_A	chr1:1059610	-0.181	-0.051	-0.641	<0.001%
chr1_1058403_C_T	chr1:1058403	-0.256	-0.420	-0.634	<0.001%
chr1_1059502_C_T	chr1:1059502	-0.004	0.097	0.614	0.0039%
chr1_1059635_T_A	chr1:1059635	-0.374	0.018	-0.235	<0.001%
chr1_1058752_G_T	chr1:1058752	0.033	0.089	0.588	0.0013%
chr1_1059520_C_T	chr1:1059520	0.045	0.058	0.588	0.0026%
chr1_1038136_G_T	chr1:1038136	-0.369	-0.550	-0.484	<0.001%
chr1_1037792_G_C	chr1:1037792	-0.311	-0.379	-0.582	<0.001%
chr1_1058869_A_G	chr1:1058869	-0.037	-0.093	-0.515	—
chr1_1058888_A_G	chr1:1058888	-0.050	-0.102	-0.503	—
chr1_1059390_C_A	chr1:1059390	0.021	0.121	0.562	6.03%
chr1_1059558_G_A	chr1:1059558	-0.031	0.125	0.562	0.0013%
chr1_1058483_G_C	chr1:1058483	-0.223	-0.495	-0.549	0.0085%
chr1_1058754_G_A	chr1:1058754	0.061	0.094	0.549	0.0013%
chr1_1058756_T_G	chr1:1058756	-0.064	-0.123	-0.549	0.0049%
chr1_1059186_C_A	chr1:1059186	-0.029	0.038	-0.549	<0.001%
chr1_1037792_G_T	chr1:1037792	-0.261	-0.296	-0.542	<0.001%
chr1_1058531_G_A	chr1:1058531	0.340	0.711	0.471	<0.001%
chr1_1038066_G_A	chr1:1038066	0.336	0.502	0.471	<0.001%
chr1_1058758_A_G	chr1:1058758	-0.059	-0.196	-0.529	<0.001%
chr1_1058483_G_A	chr1:1058483	-0.191	-0.399	-0.523	0.0026%
chr1_1058969_C_G	chr1:1058969	0.080	0.040	0.468	—
chr1_1059614_C_T	chr1:1059614	-0.103	0.021	-0.523	<0.001%
chr1_1037816_C_T	chr1:1037816	-0.314	-0.359	-0.516	<0.001%
chr1_1038104_G_A	chr1:1038104	-0.324	-0.565	-0.444	<0.001%
chr1_1037806_C_T	chr1:1037806	0.318	0.201	0.340	0.0039%
chr1_1058905_A_G	chr1:1058905	-0.047	-0.092	-0.444	—
chr1_1059657_G_A	chr1:1059657	-0.313	0.141	0.471	0.0020%
chr1_1038047_C_T	chr1:1038047	-0.241	-0.383	-0.484	<0.001%
chr1_1059674_G_T	chr1:1059674	-0.301	-0.016	-0.353	0.019%
chr1_1058577_C_A	chr1:1058577	-0.145	-0.192	-0.471	0.0013%
chr1_1059516_G_A	chr1:1059516	-0.037	0.058	0.471	0.0053%
chr1_1058513_G_C	chr1:1058513	-0.293	-0.494	-0.458	<0.001%
chr1_1058930_G_T	chr1:1058930	0.034	-0.060	0.409	—
chr1_1059690_C_G	chr1:1059690	-0.287	-0.042	0.105	<0.001%
chr1_1058893_T_G	chr1:1058893	-0.041	-0.076	-0.398	—
chr1_1059424_G_C	chr1:1059424	-0.105	-0.069	-0.444	0.0013%
chr1_1058415_T_G	chr1:1058415	-0.116	-0.337	-0.438	<0.001%
chr1_1038016_G_T	chr1:1038016	0.274	0.323	0.405	<0.001%
chr1_1058891_G_C	chr1:1058891	0.033	0.050	0.386	—
chr1_1058931_G_C	chr1:1058931	0.046	0.006	0.386	—
chr1_1058935_T_A	chr1:1058935	-0.015	0.000	-0.386	—
chr1_1059318_G_A	chr1:1059318	0.109	0.038	0.431	0.0013%
chr1_1059651_C_G	chr1:1059651	-0.272	-0.069	-0.314	<0.001%
chr1_1058479_G_A	chr1:1058479	-0.143	-0.324	-0.425	5.76%
chr1_1037800_G_T	chr1:1037800	-0.192	-0.201	-0.418	<0.001%
chr1_1058425_T_C	chr1:1058425	-0.168	-0.040	-0.418	0.0059%
chr1_1058890_G_C	chr1:1058890	0.032	0.078	0.374	—
chr1_1059591_G_C	chr1:1059591	-0.262	-0.078	-0.314	0.0013%
chr1_1037890_C_T	chr1:1037890	0.258	0.294	0.222	<0.001%
chr1_1058551_A_T	chr1:1058551	-0.206	-0.324	-0.405	0.022%
chr1_1058882_G_C	chr1:1058882	0.036	0.063	0.363	—
chr1_1058500_G_A	chr1:1058500	-0.248	-0.543	-0.366	0.0020%
chr1_1038061_G_A	chr1:1038061	-0.219	-0.351	-0.392	0.0026%
chr1_1058951_C_G	chr1:1058951	0.016	0.010	0.351	—
chr1_1059414_C_G	chr1:1059414	0.119	0.099	0.392	0.0026%
chr1_1059488_G_T	chr1:1059488	-0.010	0.042	0.392	<0.001%
chr1_1059513_C_A	chr1:1059513	0.006	0.027	0.392	0.0026%
chr1_1058430_C_T	chr1:1058430	-0.124	-0.268	-0.386	0.011%
chr1_1038081_G_A	chr1:1038081	-0.241	-0.396	-0.327	<0.001%
chr1_1037865_G_A	chr1:1037865	-0.155	-0.187	-0.379	<0.001%
chr1_1058574_G_C	chr1:1058574	0.199	0.409	0.379	0.0085%
chr1_1058881_G_C	chr1:1058881	0.027	0.053	0.339	—
chr1_1058953_A_C	chr1:1058953	0.060	0.039	0.339	—
chr1_1059480_A_G	chr1:1059480	-0.103	-0.045	-0.379	<0.001%
chr1_1059504_A_T	chr1:1059504	-0.006	0.006	0.379	0.0066%
chr1_1059671_C_G	chr1:1059671	-0.233	-0.010	-0.235	0.0034%
chr1_1038139_C_T	chr1:1038139	0.181	0.179	0.366	0.014%
chr1_1058874_G_C	chr1:1058874	0.029	0.062	0.327	—
chr1_1037799_G_A	chr1:1037799	-0.198	-0.212	-0.353	<0.001%
chr1_1058950_C_G	chr1:1058950	0.052	0.016	0.316	—
chr1_1058971_C_G	chr1:1058971	0.033	-0.006	0.316	—
chr1_1037804_A_G	chr1:1037804	0.221	0.204	0.340	0.0086%
chr1_1058882_G_A	chr1:1058882	0.039	0.073	0.304	—
chr1_1059184_G_T	chr1:1059184	-0.060	-0.010	-0.340	<0.001%
chr1_1059494_A_T	chr1:1059494	-0.010	0.038	0.340	<0.001%
chr1_1059529_C_A	chr1:1059529	0.070	0.030	0.340	<0.001%
chr1_1059604_G_C	chr1:1059604	-0.025	-0.034	-0.340	0.0020%
chr1_1059655_G_A	chr1:1059655	0.122	0.054	0.340	<0.001%
chr1_1059660_T_A	chr1:1059660	-0.212	-0.088	-0.314	<0.001%
chr1_1058723_G_T	chr1:1058723	0.021	0.123	0.327	<0.001%
chr1_1058873_G_C	chr1:1058873	0.018	0.048	0.292	—
chr1_1058883_G_C	chr1:1058883	0.017	0.047	0.292	—
chr1_1058907_A_G	chr1:1058907	-0.036	-0.060	-0.292	—
chr1_1058972_C_G	chr1:1058972	0.051	0.003	0.292	—
chr1_1058994_A_G	chr1:1058994	-0.033	-0.025	-0.292	—
chr1_1059351_G_A	chr1:1059351	0.045	0.034	0.327	0.0020%
chr1_1059381_G_A	chr1:1059381	-0.129	-0.033	-0.327	0.0059%
chr1_1038169_G_T	chr1:1038169	0.192	0.284	0.314	<0.001%
chr1_1058418_G_A	chr1:1058418	0.192	0.227	0.314	0.205%
chr1_1058733_G_A	chr1:1058733	0.024	0.038	0.314	<0.001%
chr1_1058882_G_T	chr1:1058882	0.031	0.069	0.281	—
chr1_1058883_G_T	chr1:1058883	0.016	0.060	0.281	—
chr1_1058890_G_T	chr1:1058890	0.032	0.078	0.281	—
chr1_1058891_G_T	chr1:1058891	0.031	0.064	0.281	0.555%
chr1_1058910_C_G	chr1:1058910	-0.044	-0.073	-0.281	—
chr1_1058971_C_A	chr1:1058971	0.038	-0.008	0.281	—
chr1_1059534_G_A	chr1:1059534	-0.039	0.046	0.314	<0.001%
chr1_1058382_G_A	chr1:1058382	-0.179	-0.308	-0.307	<0.001%
chr1_1038216_G_C	chr1:1038216	-0.181	-0.297	-0.301	0.0033%
chr1_1058393_A_C	chr1:1058393	0.109	0.081	0.301	0.0020%
chr1_1058474_G_A	chr1:1058474	0.059	-0.225	-0.301	<0.001%
chr1_1058545_G_A	chr1:1058545	-0.115	-0.166	-0.301	0.0020%
chr1_1058755_G_T	chr1:1058755	0.035	0.064	0.301	0.0079%
chr1_1058871_T_G	chr1:1058871	-0.027	-0.039	-0.269	—
chr1_1058886_C_G	chr1:1058886	-0.031	-0.063	-0.269	—
chr1_1058900_C_G	chr1:1058900	-0.030	-0.050	-0.269	—
chr1_1058952_T_G	chr1:1058952	0.026	0.023	0.269	—
chr1_1058396_C_T	chr1:1058396	0.167	0.581	-0.039	0.096%
chr1_1037859_C_T	chr1:1037859	0.186	0.204	0.144	<0.001%
chr1_1037838_C_T	chr1:1037838	-0.177	-0.241	-0.288	0.0026%
chr1_1037882_G_T	chr1:1037882	0.181	0.179	0.196	0.0020%
chr1_1038283_T_C	chr1:1038283	0.097	0.150	0.288	0.016%
chr1_1058874_G_A	chr1:1058874	0.027	0.059	0.257	—
chr1_1059021_G_A	chr1:1059021	-0.021	-0.002	-0.288	<0.001%
chr1_1059327_G_T	chr1:1059327	-0.058	0.000	-0.288	0.0039%
chr1_1059509_C_A	chr1:1059509	-0.056	0.029	0.288	<0.001%
chr1_1058176_C_T	chr1:1058176	-0.060	-0.099	-0.275	<0.001%
chr1_1058874_G_T	chr1:1058874	0.022	0.062	0.246	—
chr1_1058881_G_A	chr1:1058881	0.025	0.055	0.246	—
chr1_1058881_G_T	chr1:1058881	0.022	0.055	0.246	—
chr1_1058883_G_A	chr1:1058883	0.014	0.054	0.246	—
chr1_1058889_G_C	chr1:1058889	0.025	0.052	0.246	—
chr1_1058891_G_A	chr1:1058891	0.029	0.057	0.246	—
chr1_1058931_G_T	chr1:1058931	0.018	0.009	0.246	—
chr1_1058950_C_A	chr1:1058950	0.052	0.010	0.246	—
chr1_1058953_A_G	chr1:1058953	0.027	0.005	0.246	—
chr1_1058972_C_A	chr1:1058972	0.046	0.014	0.246	—
chr1_1058972_C_T	chr1:1058972	0.038	0.003	0.246	—
chr1_1058982_A_G	chr1:1058982	-0.033	-0.019	-0.246	—
chr1_1058997_A_G	chr1:1058997	-0.036	-0.014	-0.246	<0.001%
chr1_1059391_G_T	chr1:1059391	0.080	0.014	0.275	0.0020%
chr1_1059429_G_A	chr1:1059429	-0.101	-0.039	-0.275	<0.001%
chr1_1059639_C_A	chr1:1059639	-0.173	-0.013	-0.039	0.0083%
chr1_1038217_G_T	chr1:1038217	-0.171	-0.236	-0.248	<0.001%
chr1_1038087_A_G	chr1:1038087	-0.136	-0.093	-0.261	<0.001%
chr1_1038254_A_G	chr1:1038254	-0.078	-0.150	-0.261	<0.001%
chr1_1058581_G_T	chr1:1058581	-0.041	-0.032	-0.261	<0.001%
chr1_1058708_G_T	chr1:1058708	0.021	0.051	0.261	<0.001%
chr1_1058875_G_C	chr1:1058875	0.022	0.023	0.234	—
chr1_1058879_A_G	chr1:1058879	-0.024	-0.042	-0.234	—
chr1_1058929_A_G	chr1:1058929	-0.007	-0.033	0.234	—
chr1_1058954_G_A	chr1:1058954	0.040	0.033	0.234	—
chr1_1058954_G_C	chr1:1058954	0.045	0.023	0.234	<0.001%
chr1_1058959_G_T	chr1:1058959	-0.026	0.016	-0.234	—
chr1_1058969_C_T	chr1:1058969	0.046	0.020	0.234	—
chr1_1058970_C_G	chr1:1058970	0.023	-0.011	0.234	—
chr1_1059112_G_C	chr1:1059112	-0.080	0.011	-0.261	0.0013%
chr1_1059139_G_C	chr1:1059139	0.062	0.034	0.261	<0.001%
chr1_1059268_C_G	chr1:1059268	-0.052	-0.027	-0.261	<0.001%
chr1_1038020_G_A	chr1:1038020	-0.163	-0.227	0.013	<0.001%
chr1_1059638_C_A	chr1:1059638	-0.163	0.059	0.144	0.0026%
chr1_1058525_A_G	chr1:1058525	-0.158	-0.385	-0.052	0.0020%
chr1_1037770_G_A	chr1:1037770	-0.157	-0.152	-0.248	<0.001%
chr1_1038025_G_A	chr1:1038025	0.097	0.233	0.248	<0.001%
chr1_1058600_C_T	chr1:1058600	-0.068	-0.141	-0.248	0.0013%
chr1_1058746_T_G	chr1:1058746	-0.015	-0.093	-0.248	0.0015%
chr1_1058873_G_A	chr1:1058873	0.023	0.050	0.222	—
chr1_1058880_G_C	chr1:1058880	0.013	0.035	0.222	—
chr1_1058885_C_G	chr1:1058885	-0.025	-0.035	-0.222	—
chr1_1058901_A_G	chr1:1058901	-0.018	-0.040	-0.222	—
chr1_1058928_C_G	chr1:1058928	0.017	-0.054	0.222	—

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.