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LPCAT1
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near LPCAT1
chr5:1,361,426..1,623,960, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR ▾ | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr5_1380535_G_A | chr5:1380535 | -44,864 | -9,280 | -76,544 | 2.6e-5 |
| chr5_1380530_C_T | chr5:1380530 | -42,240 | -8,624 | -69,440 | 6.6e-6 |
| chr5_1380537_G_A | chr5:1380537 | -38,560 | -8,128 | -65,984 | 2.0e-5 |
| chr5_1380537_G_C | chr5:1380537 | -37,472 | -8,208 | -67,328 | 6.6e-6 |
| chr5_1385928_G_A | chr5:1385928 | -34,560 | -1,568 | -43,008 | 2.0e-5 |
| chr5_1385963_A_G | chr5:1385963 | -30,208 | -4,192 | -29,696 | 1.3e-5 |
| chr5_1380532_G_A | chr5:1380532 | -29,696 | -6,672 | -54,656 | 3.3e-5 |
| chr5_1385809_C_T | chr5:1385809 | 24,896 | 6,592 | 19,968 | 1.3e-5 |
| chr5_1386110_A_G | chr5:1386110 | -22,656 | -1,792 | 17,664 | 6.6e-6 |
| chr5_1386436_G_C | chr5:1386436 | -22,528 | -10,688 | -35,328 | 5.9e-5 |
| chr5_1386592_C_T | chr5:1386592 | -20,800 | -6,112 | -21,376 | 2.0e-5 |
| chr5_1380574_G_T | chr5:1380574 | -19,904 | -4,336 | -38,528 | 1.3e-5 |
| chr5_1386644_G_C | chr5:1386644 | -17,792 | -5,088 | -14,464 | 6.6e-6 |
| chr5_1386644_G_T | chr5:1386644 | -17,152 | -5,120 | -13,952 | 6.6e-6 |
| chr5_1385924_A_T | chr5:1385924 | -16,256 | -864 | -24,576 | 6.6e-6 |
| chr5_1380575_C_T | chr5:1380575 | -15,744 | -2,976 | -29,440 | 1.5e-4 |
| chr5_1386038_G_A | chr5:1386038 | 15,104 | 2,336 | 10,240 | 6.6e-6 |
| chr5_1386643_C_T | chr5:1386643 | -13,760 | -4,448 | -12,672 | 6.6e-6 |
| chr5_1380505_C_G | chr5:1380505 | 12,736 | 1,008 | 11,008 | 6.6e-6 |
| chr5_1386558_C_G | chr5:1386558 | -12,608 | -2,080 | -7,424 | 2.0e-5 |
| chr5_1380508_G_C | chr5:1380508 | -12,480 | -2,992 | -23,168 | 6.6e-6 |
| chr5_1386608_G_T | chr5:1386608 | -12,288 | -2,848 | -12,544 | 2.6e-5 |
| chr5_1386581_G_C | chr5:1386581 | -12,224 | -3,232 | -16,640 | 3.9e-5 |
| chr5_1380633_G_A | chr5:1380633 | 11,904 | 2,848 | 18,688 | 6.6e-6 |
| chr5_1380685_C_G | chr5:1380685 | -11,008 | -2,784 | -15,488 | 6.6e-6 |
| chr5_1386628_G_T | chr5:1386628 | -10,880 | -2,624 | -11,776 | 3.9e-5 |
| chr5_1386578_C_G | chr5:1386578 | -10,880 | -896 | -4,608 | 7.2e-5 |
| chr5_1386495_G_C | chr5:1386495 | -10,176 | -2,240 | -10,240 | 1.4e-4 |
| chr5_1386627_C_G | chr5:1386627 | -10,176 | -2,720 | -8,192 | 6.6e-6 |
| chr5_1385798_C_T | chr5:1385798 | 10,048 | 1,632 | 5,120 | 6.6e-6 |
| chr5_1380477_G_A | chr5:1380477 | -9,984 | -1,104 | -10,112 | 6.6e-6 |
| chr5_1385935_C_A | chr5:1385935 | -9,728 | 960 | -18,432 | 2.6e-5 |
| chr5_1386525_C_A | chr5:1386525 | -9,728 | -2,688 | -15,616 | 2.0e-5 |
| chr5_1385909_C_G | chr5:1385909 | -8,960 | -1,824 | -7,680 | 3.3e-5 |
| chr5_1380602_G_A | chr5:1380602 | 8,832 | 1,168 | 10,368 | 6.6e-6 |
| chr5_1386074_C_A | chr5:1386074 | 8,704 | 320 | -10,752 | 6.6e-6 |
| chr5_1386017_G_A | chr5:1386017 | 8,704 | 1,536 | 5,632 | 1.1e-4 |
| chr5_1380519_C_T | chr5:1380519 | -8,640 | -1,792 | -15,104 | 1.4e-4 |
| chr5_1380576_C_T | chr5:1380576 | -8,384 | -1,968 | -19,968 | 1.3e-5 |
| chr5_1380614_C_T | chr5:1380614 | -8,320 | -1,552 | -12,544 | 1.2e-4 |
| chr5_1385822_G_A | chr5:1385822 | -8,320 | -832 | -2,048 | 6.6e-6 |
| chr5_1380588_C_T | chr5:1380588 | -8,256 | -816 | -8,576 | 2.8e-3 |
| chr5_1385906_T_C | chr5:1385906 | -8,192 | -2,272 | -3,072 | 6.6e-6 |
| chr5_1380520_G_A | chr5:1380520 | -7,936 | -1,088 | -10,368 | 6.6e-6 |
| chr5_1380527_C_T | chr5:1380527 | -7,872 | -1,008 | -10,624 | 4.6e-5 |
| chr5_1385975_A_T | chr5:1385975 | 7,808 | 3,136 | 4,608 | 6.6e-6 |
| chr5_1380592_A_G | chr5:1380592 | 7,680 | 1,392 | 9,856 | 6.6e-6 |
| chr5_1385960_G_T | chr5:1385960 | -7,552 | -1,248 | -11,264 | 1.3e-5 |
| chr5_1380546_C_G | chr5:1380546 | -7,424 | -1,728 | -12,800 | 6.6e-6 |
| chr5_1386134_C_T | chr5:1386134 | -7,296 | 672 | -1,792 | 2.0e-5 |
| chr5_1380590_G_A | chr5:1380590 | -7,232 | -1,120 | -12,032 | 6.6e-6 |
| chr5_1386495_G_T | chr5:1386495 | -7,232 | -2,080 | -8,704 | 1.3e-5 |
| chr5_1386026_T_C | chr5:1386026 | 7,168 | 224 | 1,792 | 1.4e-4 |
| chr5_1386486_G_T | chr5:1386486 | -7,040 | -1,536 | -13,824 | 1.3e-5 |
| chr5_1386679_G_A | chr5:1386679 | -6,912 | -2,688 | -12,416 | 5.9e-5 |
| chr5_1380470_G_A | chr5:1380470 | -6,880 | -1,376 | -5,632 | 2.0e-5 |
| chr5_1380606_C_T | chr5:1380606 | 6,848 | 928 | 12,544 | 2.6e-5 |
| chr5_1385835_C_G | chr5:1385835 | -6,784 | -2,368 | -7,168 | 6.6e-6 |
| chr5_1385891_G_C | chr5:1385891 | -6,784 | -1,184 | -5,632 | 2.6e-5 |
| chr5_1380517_C_G | chr5:1380517 | 6,720 | 1,088 | 10,752 | 4.6e-5 |
| chr5_1386515_C_T | chr5:1386515 | -6,720 | -1,984 | -8,960 | 6.6e-6 |
| chr5_1380618_C_T | chr5:1380618 | 6,720 | 1,296 | 6,400 | 1.8e-3 |
| chr5_1386552_C_T | chr5:1386552 | 6,720 | 4,032 | 5,888 | 6.6e-6 |
| chr5_1385870_A_C | chr5:1385870 | 6,656 | 1,024 | 5,632 | 6.6e-6 |
| chr5_1386493_G_A | chr5:1386493 | -6,592 | -3,264 | -11,520 | 2.0e-5 |
| chr5_1380511_C_G | chr5:1380511 | 6,400 | 784 | 8,064 | 1.3e-5 |
| chr5_1385880_G_C | chr5:1385880 | 6,400 | 736 | 7,168 | 1.3e-5 |
| chr5_1386398_C_T | chr5:1386398 | -6,400 | -672 | -512 | 6.6e-6 |
| chr5_1386559_T_G | chr5:1386559 | -6,400 | -1,984 | -4,864 | 6.6e-6 |
| chr5_1380553_C_T | chr5:1380553 | 6,336 | 816 | 10,368 | 2.6e-5 |
| chr5_1386525_C_T | chr5:1386525 | -6,336 | -1,280 | -9,216 | 6.6e-6 |
| chr5_1385907_G_A | chr5:1385907 | -6,272 | -672 | -7,936 | 6.6e-6 |
| chr5_1386639_G_T | chr5:1386639 | 6,208 | 2,368 | 4,864 | 6.6e-6 |
| chr5_1385754_C_T | chr5:1385754 | -6,016 | -1,568 | -10,496 | 1.6e-2 |
| chr5_1380635_C_G | chr5:1380635 | 5,952 | 1,056 | 10,240 | 6.6e-6 |
| chr5_1380702_A_G | chr5:1380702 | 5,888 | 1,328 | 8,064 | 1.3e-5 |
| chr5_1380608_C_T | chr5:1380608 | 5,888 | 912 | 7,808 | 1.3e-5 |
| chr5_1380645_G_A | chr5:1380645 | -5,888 | -656 | -6,528 | 3.9e-5 |
| chr5_1380631_G_C | chr5:1380631 | 5,824 | 368 | 6,144 | 6.6e-6 |
| chr5_1385855_G_A | chr5:1385855 | -5,760 | -1,120 | -5,632 | 6.6e-6 |
| chr5_1385971_T_C | chr5:1385971 | -5,760 | -96 | -5,376 | 6.6e-6 |
| chr5_1380548_C_G | chr5:1380548 | 5,696 | 784 | 6,656 | 2.0e-5 |
| chr5_1380487_C_T | chr5:1380487 | -5,696 | -976 | -5,632 | 6.6e-5 |
| chr5_1385961_G_C | chr5:1385961 | -5,632 | -1,024 | -7,424 | 6.6e-6 |
| chr5_1386020_G_T | chr5:1386020 | 5,632 | -64 | 0 | 1.8e-4 |
| chr5_1386390_C_T | chr5:1386390 | -5,632 | -1,760 | -3,072 | 6.6e-6 |
| chr5_1380504_C_T | chr5:1380504 | 5,504 | 672 | 9,600 | 6.6e-6 |
| chr5_1386027_G_T | chr5:1386027 | 5,504 | 192 | -2,816 | 6.6e-6 |
| chr5_1386094_C_T | chr5:1386094 | -5,504 | -320 | 2,048 | 6.6e-6 |
| chr5_1386291_C_T | chr5:1386291 | 5,504 | -224 | -2,816 | 6.6e-6 |
| chr5_1380673_G_A | chr5:1380673 | -5,440 | -752 | -8,704 | 6.6e-6 |
| chr5_1380496_C_T | chr5:1380496 | -5,440 | -656 | -4,352 | 1.3e-5 |
| chr5_1386678_C_T | chr5:1386678 | -5,440 | -1,792 | -5,376 | 1.3e-5 |
| chr5_1380468_C_G | chr5:1380468 | -5,408 | -1,680 | -9,344 | 6.6e-6 |
| chr5_1386136_G_T | chr5:1386136 | -5,376 | 896 | -7,424 | 1.3e-5 |
| chr5_1385959_C_A | chr5:1385959 | 5,376 | 1,184 | -6,912 | 1.3e-5 |
| chr5_1385855_G_C | chr5:1385855 | 5,376 | 1,440 | 6,656 | 2.6e-5 |
| chr5_1386123_G_A | chr5:1386123 | -5,376 | 1,216 | 5,632 | 6.6e-6 |
| chr5_1385968_C_T | chr5:1385968 | -5,376 | -960 | -5,376 | 1.4e-4 |
| chr5_1386492_C_G | chr5:1386492 | -5,376 | 896 | -4,352 | 6.6e-6 |
| chr5_1380566_A_G | chr5:1380566 | 5,312 | 704 | 6,656 | 2.0e-5 |
| chr5_1385909_C_T | chr5:1385909 | -5,248 | -1,120 | -7,936 | 1.3e-5 |
| chr5_1380584_G_A | chr5:1380584 | -5,248 | -480 | -6,272 | 1.3e-5 |
| chr5_1386412_C_T | chr5:1386412 | -5,248 | -960 | 2,560 | 6.6e-6 |
| chr5_1380625_G_A | chr5:1380625 | -5,184 | -912 | -5,248 | 2.0e-5 |
| chr5_1385873_G_A | chr5:1385873 | 5,120 | 1,152 | 2,048 | 2.0e-5 |
| chr5_1380464_C_A | chr5:1380464 | 5,024 | 464 | 7,936 | 3.3e-5 |
| chr5_1380555_C_G | chr5:1380555 | -4,992 | -496 | -9,344 | 6.6e-6 |
| chr5_1385835_C_T | chr5:1385835 | -4,992 | -1,632 | -6,656 | 6.6e-6 |
| chr5_1386096_C_G | chr5:1386096 | 4,992 | -128 | -1,280 | 6.6e-6 |
| chr5_1380563_C_A | chr5:1380563 | 4,800 | -208 | 1,152 | 1.3e-5 |
| chr5_1385776_C_A | chr5:1385776 | -4,736 | -2,080 | -15,872 | 6.6e-6 |
| chr5_1380532_G_C | chr5:1380532 | 4,736 | 768 | 8,320 | 6.6e-6 |
| chr5_1386503_G_A | chr5:1386503 | -4,672 | -1,856 | -7,936 | 6.6e-6 |
| chr5_1380444_C_T | chr5:1380444 | -4,672 | -368 | -2,688 | 1.3e-5 |
| chr5_1380528_G_A | chr5:1380528 | -4,608 | -400 | -4,352 | 6.6e-6 |
| chr5_1385872_C_T | chr5:1385872 | -4,608 | 192 | -4,096 | 1.3e-5 |
| chr5_1385864_C_G | chr5:1385864 | -4,480 | -1,184 | -7,936 | 6.6e-6 |
| chr5_1386321_C_G | chr5:1386321 | -4,480 | 224 | 5,376 | 6.6e-6 |
| chr5_1380661_G_C | chr5:1380661 | 4,480 | 768 | 4,864 | 6.6e-6 |
| chr5_1380543_T_A | chr5:1380543 | -4,480 | -448 | -4,480 | 6.6e-6 |
| chr5_1386420_A_G | chr5:1386420 | 4,352 | 2,272 | 17,664 | 1.3e-5 |
| chr5_1386118_G_T | chr5:1386118 | -4,096 | 1,792 | 5,376 | 6.6e-6 |
| chr5_1380665_G_C | chr5:1380665 | -4,032 | -832 | -6,656 | 6.6e-6 |
| chr5_1380476_C_T | chr5:1380476 | 4,032 | 672 | 6,272 | 2.0e-5 |
| chr5_1386525_C_G | chr5:1386525 | -4,032 | -384 | -5,376 | 6.6e-6 |
| chr5_1386488_C_T | chr5:1386488 | -3,968 | -576 | -7,424 | 3.3e-5 |
| chr5_1380472_A_G | chr5:1380472 | -3,904 | -1,360 | -8,192 | 1.3e-5 |
| chr5_1437566_C_G | chr5:1437566 | 3,808 | 128 | 6,720 | 6.6e-6 |
| chr5_1380586_A_T | chr5:1380586 | -3,776 | -832 | -7,552 | 6.6e-6 |
| chr5_1386470_C_T | chr5:1386470 | -3,712 | -3,616 | -23,552 | 6.6e-6 |
| chr5_1385986_T_C | chr5:1385986 | 3,584 | 704 | 6,656 | 2.6e-5 |
| chr5_1386154_G_T | chr5:1386154 | -3,584 | 928 | -5,376 | 6.6e-6 |
| chr5_1386346_T_C | chr5:1386346 | 3,456 | 864 | 10,496 | 1.3e-5 |
| chr5_1385885_G_T | chr5:1385885 | -3,456 | -480 | -6,656 | 3.3e-5 |
| chr5_1386718_A_G | chr5:1386718 | 3,392 | 1,216 | 4,992 | 1.3e-5 |
| chr5_1385876_T_C | chr5:1385876 | 3,328 | 1,184 | 8,960 | 1.3e-5 |
| chr5_1386156_C_G | chr5:1386156 | -3,328 | 32 | -6,144 | 1.7e-4 |
| chr5_1386380_G_C | chr5:1386380 | -3,200 | -2,848 | -14,336 | 6.6e-6 |
| chr5_1385821_A_C | chr5:1385821 | -3,200 | -1,792 | -7,168 | 6.6e-6 |
| chr5_1385861_G_C | chr5:1385861 | -3,200 | 416 | -6,144 | 6.6e-6 |
| chr5_1380201_T_C | chr5:1380201 | 3,200 | 1,184 | 5,632 | 3.3e-5 |
| chr5_1380603_C_T | chr5:1380603 | 3,200 | 544 | 5,504 | 6.6e-6 |
| chr5_1386373_C_A | chr5:1386373 | -3,072 | 64 | -8,192 | 6.6e-6 |
| chr5_1385884_C_G | chr5:1385884 | 3,072 | -960 | 6,912 | 1.3e-5 |
| chr5_1408825_T_C | chr5:1408825 | -3,072 | -1,200 | -6,528 | 2.6e-5 |
| chr5_1385955_G_A | chr5:1385955 | 3,072 | 1,376 | 5,632 | 1.3e-5 |
| chr5_1385653_T_C | chr5:1385653 | 3,008 | 128 | 5,120 | 6.6e-6 |
| chr5_1385974_G_T | chr5:1385974 | -2,944 | -608 | -15,360 | 6.6e-6 |
| chr5_1385981_C_A | chr5:1385981 | 2,944 | 320 | 8,192 | 4.6e-5 |
| chr5_1386004_G_A | chr5:1386004 | -2,944 | -704 | -7,936 | 1.4e-4 |
| chr5_1380580_C_T | chr5:1380580 | -2,944 | -624 | -4,608 | 6.6e-6 |
| chr5_1380521_C_G | chr5:1380521 | -2,816 | -832 | -7,424 | 4.6e-5 |
| chr5_1386457_C_G | chr5:1386457 | 2,816 | 768 | -6,144 | 6.6e-6 |
| chr5_1380325_A_G | chr5:1380325 | -2,816 | -480 | -4,480 | 1.3e-5 |
| chr5_1385995_C_T | chr5:1385995 | -2,688 | -1,856 | -15,616 | 6.6e-6 |
| chr5_1380709_A_G | chr5:1380709 | 2,688 | 576 | 4,992 | 3.3e-5 |
| chr5_1399873_G_T | chr5:1399873 | -2,624 | 192 | -5,248 | 6.6e-6 |
| chr5_1385982_C_G | chr5:1385982 | -2,560 | -2,176 | 6,400 | 1.3e-5 |
| chr5_1386349_C_T | chr5:1386349 | 2,560 | -416 | -5,632 | 6.6e-6 |
| chr5_1386007_C_T | chr5:1386007 | -2,560 | -1,024 | -5,120 | 1.3e-5 |
| chr5_1408760_C_G | chr5:1408760 | -2,304 | -224 | -5,632 | 1.3e-5 |
| chr5_1380676_G_T | chr5:1380676 | 2,304 | 544 | 4,864 | 1.3e-5 |
| chr5_1380639_G_A | chr5:1380639 | -2,240 | -912 | -6,016 | 6.6e-6 |
| chr5_1408765_G_A | chr5:1408765 | -2,144 | -560 | -6,272 | 3.2e-4 |
| chr5_1386480_G_A | chr5:1386480 | 2,048 | 416 | 5,632 | 1.1e-4 |
| chr5_1386461_G_A | chr5:1386461 | -1,984 | 384 | -8,192 | 6.6e-6 |
| chr5_1386474_C_T | chr5:1386474 | 1,920 | -1,440 | -11,776 | 6.6e-6 |
| chr5_1380483_C_T | chr5:1380483 | 1,856 | 256 | 6,272 | 6.6e-6 |
| chr5_1386597_C_A | chr5:1386597 | 1,792 | 640 | 11,008 | 6.6e-6 |
| chr5_1408782_C_T | chr5:1408782 | -1,792 | -544 | -4,736 | 3.8e-3 |
| chr5_1385704_T_G | chr5:1385704 | 1,728 | 320 | 4,864 | 6.6e-6 |
| chr5_1380644_C_T | chr5:1380644 | 1,664 | 912 | 8,832 | 6.6e-6 |
| chr5_1386563_C_T | chr5:1386563 | 1,664 | -64 | -8,448 | 6.6e-6 |
| chr5_1437565_G_A | chr5:1437565 | -1,568 | 208 | -5,760 | 6.6e-6 |
| chr5_1386483_G_A | chr5:1386483 | 1,536 | -4,032 | -8,704 | 6.6e-6 |
| chr5_1386738_G_T | chr5:1386738 | -1,472 | -768 | -6,400 | 2.0e-5 |
| chr5_1408749_C_T | chr5:1408749 | -1,472 | -304 | -4,992 | 6.6e-6 |
| chr5_1380494_T_G | chr5:1380494 | -1,408 | -1,104 | -9,472 | 6.6e-6 |
| chr5_1380546_C_T | chr5:1380546 | 1,408 | 512 | 5,504 | 6.6e-6 |
| chr5_1386479_C_G | chr5:1386479 | 1,408 | -1,056 | 4,608 | 1.3e-5 |
| chr5_1386189_G_A | chr5:1386189 | -1,152 | 640 | -8,960 | 6.6e-6 |
| chr5_1386487_C_A | chr5:1386487 | -1,152 | -224 | -8,448 | 2.6e-5 |
| chr5_1385896_C_T | chr5:1385896 | -1,152 | 32 | -4,608 | 6.6e-6 |
| chr5_1386505_G_C | chr5:1386505 | -1,088 | 32 | -8,704 | 2.0e-5 |
| chr5_1386242_C_T | chr5:1386242 | 1,024 | 1,312 | 5,376 | 6.6e-6 |
| chr5_1386528_G_A | chr5:1386528 | -960 | -960 | -4,608 | 6.6e-6 |
| chr5_1386293_C_A | chr5:1386293 | -896 | 64 | -6,912 | 1.3e-5 |
| chr5_1386209_C_T | chr5:1386209 | 896 | -192 | -5,120 | 6.6e-5 |
| chr5_1386448_A_G | chr5:1386448 | 896 | 1,920 | 4,864 | 7.2e-5 |
| chr5_1385766_G_A | chr5:1385766 | -768 | -384 | -6,912 | 2.6e-5 |
| chr5_1386396_C_G | chr5:1386396 | -768 | 192 | -6,400 | 6.6e-6 |
| chr5_1386153_C_T | chr5:1386153 | 768 | 32 | -4,864 | 6.6e-6 |
| chr5_1386486_G_A | chr5:1386486 | 640 | -928 | -13,312 | 3.3e-5 |
| chr5_1385865_G_C | chr5:1385865 | -640 | 480 | -7,680 | 6.6e-5 |
| chr5_1386060_C_T | chr5:1386060 | -512 | -160 | -7,680 | 2.0e-5 |
| chr5_1385964_G_A | chr5:1385964 | -384 | -736 | -4,864 | 2.0e-5 |
| chr5_1386067_A_T | chr5:1386067 | -256 | 1,120 | 9,472 | 6.6e-6 |
| chr5_1386477_C_T | chr5:1386477 | -256 | -192 | 7,936 | 2.0e-5 |
| chr5_1386481_T_C | chr5:1386481 | 192 | -384 | 9,728 | 1.3e-5 |
Showing 200 of 200 in this window. Scores are the raw center bin Δ, ALT minus REF; click a column to sort.