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LRRC56
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near LRRC56
chr11:437,526..654,912, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr11_448426_G_A | chr11:448426 | -1.000 | -0.645 | -1.000 | 0.0026% |
| chr11_448432_T_C | chr11:448432 | -1.000 | -0.537 | -0.693 | <0.001% |
| chr11_448424_G_C | chr11:448424 | -1.000 | -0.335 | -0.562 | <0.001% |
| chr11_442006_C_T | chr11:442006 | -0.491 | -0.484 | -1.000 | <0.001% |
| chr11_442007_C_T | chr11:442007 | -0.446 | -0.417 | -1.000 | 0.0085% |
| chr11_442007_C_A | chr11:442007 | -0.390 | -0.398 | -1.000 | <0.001% |
| chr11_441843_G_T | chr11:441843 | 0.136 | 0.286 | 1.000 | <0.001% |
| chr11_442025_C_T | chr11:442025 | -0.333 | -0.209 | -1.000 | 0.0033% |
| chr11_441997_A_G | chr11:441997 | 0.222 | -0.038 | 1.000 | <0.001% |
| chr11_448194_C_T | chr11:448194 | 0.668 | 0.693 | 1.000 | 0.0026% |
| chr11_448406_A_G | chr11:448406 | -0.788 | -0.281 | -0.235 | <0.001% |
| chr11_450352_C_G | chr11:450352 | 0.755 | 0.070 | -0.144 | 0.0020% |
| chr11_442023_C_T | chr11:442023 | -0.209 | -0.238 | -1.000 | <0.001% |
| chr11_445825_C_T | chr11:445825 | -0.604 | -0.955 | -1.000 | <0.001% |
| chr11_441802_C_G | chr11:441802 | 0.277 | 0.329 | 1.000 | <0.001% |
| chr11_441844_G_A | chr11:441844 | 0.140 | 0.238 | 1.000 | 0.0085% |
| chr11_448297_C_G | chr11:448297 | 0.713 | 0.367 | -0.026 | <0.001% |
| chr11_448240_G_A | chr11:448240 | -0.590 | -0.435 | -1.000 | 0.0013% |
| chr11_441848_G_C | chr11:441848 | 0.137 | 0.270 | 1.000 | 0.0059% |
| chr11_441987_G_A | chr11:441987 | 0.068 | -0.157 | -1.000 | 0.015% |
| chr11_448217_C_T | chr11:448217 | 0.136 | 0.272 | 1.000 | 0.045% |
| chr11_450351_C_T | chr11:450351 | 0.682 | 0.080 | 0.222 | 0.0026% |
| chr11_441841_G_A | chr11:441841 | 0.118 | 0.265 | 1.000 | 0.027% |
| chr11_441849_G_T | chr11:441849 | 0.106 | 0.252 | 0.993 | 0.0013% |
| chr11_441844_G_T | chr11:441844 | 0.115 | 0.195 | 0.961 | <0.001% |
| chr11_441999_C_A | chr11:441999 | 0.194 | 0.000 | 0.948 | <0.001% |
| chr11_442043_G_A | chr11:442043 | -0.221 | -0.040 | -0.915 | 0.0039% |
| chr11_450462_A_C | chr11:450462 | -0.023 | -0.121 | -0.915 | <0.001% |
| chr11_441857_G_A | chr11:441857 | 0.136 | 0.200 | 0.882 | 0.0013% |
| chr11_448197_T_C | chr11:448197 | -0.181 | -0.187 | -0.863 | 0.0020% |
| chr11_448434_C_T | chr11:448434 | -0.540 | -0.319 | -0.392 | <0.001% |
| chr11_445817_G_A | chr11:445817 | -0.464 | -0.703 | -0.850 | <0.001% |
| chr11_441833_G_A | chr11:441833 | 0.086 | 0.181 | 0.817 | 0.0013% |
| chr11_445937_A_G | chr11:445937 | 0.513 | 0.904 | 0.699 | 0.0013% |
| chr11_445854_T_C | chr11:445854 | 0.511 | 0.738 | 0.739 | <0.001% |
| chr11_448286_C_T | chr11:448286 | 0.503 | 0.105 | -0.105 | 0.0013% |
| chr11_441840_G_C | chr11:441840 | 0.142 | 0.192 | 0.784 | 0.0020% |
| chr11_450485_A_G | chr11:450485 | -0.151 | -0.145 | -0.771 | 1.23% |
| chr11_445896_T_A | chr11:445896 | -0.413 | -0.842 | -0.765 | <0.001% |
| chr11_448158_T_C | chr11:448158 | -0.311 | -0.217 | -0.758 | 0.0020% |
| chr11_448215_C_T | chr11:448215 | 0.421 | 0.319 | 0.758 | <0.001% |
| chr11_448218_C_T | chr11:448218 | 0.087 | 0.195 | 0.758 | 0.0013% |
| chr11_450332_C_T | chr11:450332 | 0.472 | 0.158 | 0.078 | <0.001% |
| chr11_441833_G_C | chr11:441833 | 0.104 | 0.161 | 0.739 | 0.0020% |
| chr11_448469_G_C | chr11:448469 | 0.099 | 0.153 | 0.732 | <0.001% |
| chr11_442078_G_A | chr11:442078 | -0.148 | -0.038 | -0.725 | 0.079% |
| chr11_448213_C_G | chr11:448213 | 0.206 | 0.220 | 0.719 | <0.001% |
| chr11_450539_G_T | chr11:450539 | -0.006 | 0.097 | 0.719 | 0.0013% |
| chr11_445939_C_A | chr11:445939 | 0.452 | 0.733 | 0.458 | 0.0013% |
| chr11_450348_C_T | chr11:450348 | 0.452 | 0.366 | 0.301 | 0.0085% |
| chr11_442019_G_A | chr11:442019 | -0.116 | -0.060 | -0.708 | <0.001% |
| chr11_448625_A_C | chr11:448625 | 0.441 | 0.185 | 0.340 | <0.001% |
| chr11_450123_C_G | chr11:450123 | 0.439 | 0.102 | 0.092 | 0.0013% |
| chr11_448108_C_T | chr11:448108 | -0.438 | -0.182 | -0.353 | <0.001% |
| chr11_450463_G_A | chr11:450463 | 0.056 | 0.126 | 0.693 | 0.485% |
| chr11_450558_G_T | chr11:450558 | 0.035 | 0.094 | 0.620 | — |
| chr11_450513_G_A | chr11:450513 | -0.019 | 0.077 | 0.680 | <0.001% |
| chr11_448422_G_A | chr11:448422 | -0.425 | -0.214 | -0.327 | 0.0039% |
| chr11_450564_G_T | chr11:450564 | 0.018 | 0.082 | 0.596 | — |
| chr11_450619_G_T | chr11:450619 | 0.026 | 0.078 | 0.596 | — |
| chr11_441839_C_G | chr11:441839 | -0.058 | -0.085 | -0.654 | 0.0020% |
| chr11_442059_G_A | chr11:442059 | -0.068 | -0.048 | -0.651 | 0.015% |
| chr11_448403_G_T | chr11:448403 | 0.408 | -0.003 | -0.222 | <0.001% |
| chr11_448311_G_C | chr11:448311 | -0.400 | -0.089 | -0.549 | 0.0013% |
| chr11_448153_C_A | chr11:448153 | 0.219 | 0.188 | 0.627 | <0.001% |
| chr11_450505_C_T | chr11:450505 | 0.006 | 0.094 | 0.627 | <0.001% |
| chr11_450558_G_A | chr11:450558 | 0.038 | 0.087 | 0.561 | — |
| chr11_441840_G_A | chr11:441840 | 0.091 | 0.147 | 0.614 | 0.023% |
| chr11_448243_A_G | chr11:448243 | -0.326 | -0.347 | -0.614 | <0.001% |
| chr11_448388_G_A | chr11:448388 | -0.219 | -0.291 | -0.614 | <0.001% |
| chr11_441948_A_G | chr11:441948 | 0.175 | 0.125 | 0.601 | 2.75% |
| chr11_448243_A_C | chr11:448243 | -0.379 | -0.319 | -0.431 | <0.001% |
| chr11_448073_C_T | chr11:448073 | -0.033 | -0.064 | -0.588 | 0.0013% |
| chr11_450562_A_G | chr11:450562 | -0.022 | -0.063 | -0.526 | — |
| chr11_448345_G_A | chr11:448345 | 0.363 | 0.125 | 0.144 | <0.001% |
| chr11_450512_C_T | chr11:450512 | 0.045 | 0.085 | 0.575 | 0.0013% |
| chr11_450561_C_T | chr11:450561 | 0.033 | 0.071 | 0.515 | — |
| chr11_450572_G_T | chr11:450572 | -0.003 | 0.067 | 0.515 | — |
| chr11_450333_C_G | chr11:450333 | 0.361 | 0.109 | -0.248 | 0.0033% |
| chr11_445894_C_T | chr11:445894 | 0.357 | 0.514 | 0.444 | <0.001% |
| chr11_450550_C_T | chr11:450550 | 0.076 | 0.078 | 0.562 | 0.0013% |
| chr11_450564_G_A | chr11:450564 | 0.010 | 0.084 | 0.503 | <0.001% |
| chr11_450574_C_A | chr11:450574 | 0.020 | 0.047 | 0.503 | — |
| chr11_450586_G_A | chr11:450586 | 0.003 | 0.065 | 0.503 | — |
| chr11_446167_G_C | chr11:446167 | -0.120 | -0.117 | -0.556 | 0.0027% |
| chr11_450399_T_C | chr11:450399 | -0.029 | -0.165 | -0.549 | <0.001% |
| chr11_450556_C_A | chr11:450556 | -0.025 | 0.049 | 0.491 | — |
| chr11_448239_C_T | chr11:448239 | -0.342 | -0.184 | -0.418 | <0.001% |
| chr11_442057_G_T | chr11:442057 | -0.151 | -0.052 | -0.537 | <0.001% |
| chr11_448202_C_T | chr11:448202 | -0.054 | 0.070 | 0.536 | 0.0026% |
| chr11_448240_G_C | chr11:448240 | -0.338 | -0.308 | -0.392 | <0.001% |
| chr11_450434_A_C | chr11:450434 | -0.014 | -0.096 | -0.536 | <0.001% |
| chr11_450570_G_A | chr11:450570 | 0.038 | 0.067 | 0.480 | <0.001% |
| chr11_450572_G_A | chr11:450572 | -0.007 | 0.050 | 0.480 | — |
| chr11_445856_G_A | chr11:445856 | 0.336 | 0.527 | 0.523 | 0.0020% |
| chr11_445871_C_A | chr11:445871 | 0.334 | 0.224 | 0.176 | <0.001% |
| chr11_445821_G_C | chr11:445821 | 0.331 | 0.323 | 0.314 | <0.001% |
| chr11_448062_T_C | chr11:448062 | 0.264 | 0.256 | 0.523 | <0.001% |
| chr11_450152_C_T | chr11:450152 | -0.235 | -0.294 | -0.523 | <0.001% |
| chr11_450467_C_T | chr11:450467 | 0.027 | 0.089 | 0.523 | <0.001% |
| chr11_450502_C_T | chr11:450502 | 0.004 | 0.085 | 0.523 | <0.001% |
| chr11_450503_C_T | chr11:450503 | 0.029 | 0.086 | 0.523 | <0.001% |
| chr11_450570_G_T | chr11:450570 | 0.012 | 0.053 | 0.468 | — |
| chr11_450512_C_A | chr11:450512 | 0.047 | 0.086 | 0.510 | 0.0066% |
| chr11_442077_C_T | chr11:442077 | -0.109 | -0.082 | -0.507 | 0.0039% |
| chr11_441961_C_T | chr11:441961 | -0.112 | -0.080 | -0.500 | 0.0046% |
| chr11_441854_G_A | chr11:441854 | 0.085 | 0.121 | 0.497 | 2.27% |
| chr11_450556_C_T | chr11:450556 | -0.025 | 0.049 | 0.444 | — |
| chr11_450560_C_T | chr11:450560 | -0.043 | 0.063 | 0.444 | — |
| chr11_450567_A_C | chr11:450567 | -0.079 | -0.083 | -0.444 | — |
| chr11_450569_C_A | chr11:450569 | 0.018 | 0.076 | 0.444 | — |
| chr11_450569_C_T | chr11:450569 | 0.022 | 0.064 | 0.444 | 0.0020% |
| chr11_450571_G_T | chr11:450571 | 0.012 | 0.026 | 0.444 | — |
| chr11_450573_C_T | chr11:450573 | 0.003 | 0.063 | 0.444 | — |
| chr11_446189_C_T | chr11:446189 | 0.159 | 0.232 | 0.490 | 0.0033% |
| chr11_445840_G_A | chr11:445840 | -0.259 | -0.318 | -0.484 | <0.001% |
| chr11_448220_C_T | chr11:448220 | 0.087 | 0.112 | 0.484 | <0.001% |
| chr11_448349_T_G | chr11:448349 | 0.305 | 0.160 | 0.235 | <0.001% |
| chr11_450196_G_A | chr11:450196 | -0.140 | -0.243 | -0.484 | 0.0020% |
| chr11_450428_G_A | chr11:450428 | 0.008 | 0.069 | 0.484 | <0.001% |
| chr11_450567_A_G | chr11:450567 | 0.002 | -0.063 | -0.433 | — |
| chr11_450571_G_A | chr11:450571 | 0.020 | 0.035 | 0.433 | — |
| chr11_450573_C_A | chr11:450573 | -0.002 | 0.044 | 0.433 | — |
| chr11_448074_A_G | chr11:448074 | -0.089 | -0.099 | -0.471 | <0.001% |
| chr11_448355_T_G | chr11:448355 | -0.206 | 0.051 | 0.471 | 0.0026% |
| chr11_450575_G_T | chr11:450575 | 0.008 | 0.081 | 0.421 | — |
| chr11_450580_A_C | chr11:450580 | -0.002 | -0.062 | -0.421 | — |
| chr11_448036_G_T | chr11:448036 | -0.294 | -0.363 | -0.052 | <0.001% |
| chr11_450586_G_T | chr11:450586 | -0.003 | 0.062 | 0.409 | — |
| chr11_450587_C_A | chr11:450587 | 0.020 | 0.031 | 0.409 | — |
| chr11_448555_C_G | chr11:448555 | 0.285 | 0.109 | 0.196 | 0.0046% |
| chr11_450405_G_A | chr11:450405 | -0.054 | 0.051 | 0.444 | <0.001% |
| chr11_450445_G_A | chr11:450445 | -0.014 | 0.078 | 0.444 | <0.001% |
| chr11_450559_G_T | chr11:450559 | -0.023 | 0.037 | 0.398 | — |
| chr11_450560_C_A | chr11:450560 | -0.030 | 0.057 | 0.398 | — |
| chr11_450575_G_A | chr11:450575 | 0.008 | 0.048 | 0.398 | — |
| chr11_448395_A_G | chr11:448395 | 0.276 | 0.048 | 0.092 | 0.0021% |
| chr11_450383_C_T | chr11:450383 | -0.062 | 0.080 | 0.431 | 0.0026% |
| chr11_450487_G_A | chr11:450487 | 0.021 | 0.083 | 0.431 | <0.001% |
| chr11_450545_C_T | chr11:450545 | 0.012 | 0.070 | 0.431 | 0.0026% |
| chr11_450557_C_T | chr11:450557 | 0.003 | 0.042 | 0.386 | 0.0013% |
| chr11_450574_C_T | chr11:450574 | 0.018 | 0.039 | 0.386 | — |
| chr11_448402_C_A | chr11:448402 | -0.268 | -0.105 | -0.157 | <0.001% |
| chr11_441726_G_A | chr11:441726 | 0.130 | 0.134 | 0.418 | 0.030% |
| chr11_445849_T_G | chr11:445849 | -0.264 | -0.597 | -0.412 | <0.001% |
| chr11_446164_C_G | chr11:446164 | -0.019 | 0.037 | 0.418 | 0.016% |
| chr11_450562_A_C | chr11:450562 | -0.036 | -0.055 | -0.374 | — |
| chr11_450578_C_T | chr11:450578 | 0.005 | 0.069 | 0.374 | 0.0013% |
| chr11_445941_C_A | chr11:445941 | 0.262 | 0.458 | 0.366 | 0.240% |
| chr11_442222_A_G | chr11:442222 | 0.156 | 0.086 | 0.408 | 0.0059% |
| chr11_446163_C_T | chr11:446163 | 0.056 | 0.149 | 0.405 | 0.0013% |
| chr11_448221_C_G | chr11:448221 | 0.054 | 0.096 | 0.405 | 0.0013% |
| chr11_448250_G_C | chr11:448250 | 0.256 | 0.246 | 0.327 | 0.0020% |
| chr11_450331_C_G | chr11:450331 | 0.196 | -0.093 | -0.405 | <0.001% |
| chr11_450431_C_T | chr11:450431 | -0.008 | 0.062 | 0.405 | 0.0039% |
| chr11_450559_G_A | chr11:450559 | -0.013 | 0.040 | 0.363 | — |
| chr11_450578_C_A | chr11:450578 | 0.005 | 0.069 | 0.363 | — |
| chr11_450588_C_A | chr11:450588 | 0.018 | 0.055 | 0.363 | — |
| chr11_448118_C_T | chr11:448118 | -0.252 | -0.131 | -0.118 | <0.001% |
| chr11_442168_G_C | chr11:442168 | -0.249 | -0.104 | 0.015 | 0.016% |
| chr11_450191_C_T | chr11:450191 | 0.078 | 0.117 | 0.392 | <0.001% |
| chr11_450581_G_T | chr11:450581 | 0.060 | 0.045 | 0.351 | — |
| chr11_450584_C_A | chr11:450584 | -0.010 | 0.038 | 0.351 | — |
| chr11_450162_G_C | chr11:450162 | -0.241 | -0.147 | -0.131 | <0.001% |
| chr11_442010_G_A | chr11:442010 | 0.084 | 0.030 | 0.379 | 0.0013% |
| chr11_446166_C_T | chr11:446166 | -0.006 | 0.109 | 0.379 | 0.679% |
| chr11_448374_C_T | chr11:448374 | 0.239 | -0.003 | 0.092 | 0.0013% |
| chr11_450354_C_T | chr11:450354 | 0.239 | 0.091 | 0.222 | 0.0020% |
| chr11_450576_G_A | chr11:450576 | 0.018 | 0.058 | 0.339 | <0.001% |
| chr11_450576_G_T | chr11:450576 | 0.007 | 0.042 | 0.339 | — |
| chr11_450587_C_T | chr11:450587 | -0.012 | 0.031 | 0.339 | — |
| chr11_450281_A_T | chr11:450281 | -0.237 | -0.141 | -0.170 | <0.001% |
| chr11_448109_G_T | chr11:448109 | 0.121 | 0.070 | 0.366 | 0.0013% |
| chr11_448419_T_C | chr11:448419 | 0.095 | 0.083 | -0.366 | 0.0013% |
| chr11_450328_G_C | chr11:450328 | 0.231 | 0.065 | -0.183 | <0.001% |
| chr11_450403_C_T | chr11:450403 | -0.047 | -0.021 | 0.366 | <0.001% |
| chr11_450463_G_T | chr11:450463 | 0.060 | 0.046 | 0.366 | <0.001% |
| chr11_450514_C_G | chr11:450514 | 0.062 | 0.073 | 0.366 | <0.001% |
| chr11_450574_C_G | chr11:450574 | 0.094 | 0.016 | 0.327 | — |
| chr11_450579_G_T | chr11:450579 | 0.023 | 0.074 | 0.327 | — |
| chr11_448037_G_A | chr11:448037 | -0.228 | -0.217 | 0.052 | <0.001% |
| chr11_448247_C_A | chr11:448247 | -0.144 | -0.070 | -0.353 | <0.001% |
| chr11_448276_G_A | chr11:448276 | -0.087 | -0.192 | -0.353 | 0.0013% |
| chr11_450561_C_A | chr11:450561 | 0.002 | 0.047 | 0.316 | — |
| chr11_450577_G_A | chr11:450577 | 0.017 | 0.064 | 0.316 | — |
| chr11_450585_C_A | chr11:450585 | 0.018 | 0.040 | 0.316 | — |
| chr11_450585_C_T | chr11:450585 | 0.026 | 0.042 | 0.316 | <0.001% |
| chr11_450614_C_T | chr11:450614 | 0.045 | 0.054 | 0.316 | — |
| chr11_450640_G_T | chr11:450640 | -0.038 | 0.067 | 0.316 | — |
| chr11_450137_C_G | chr11:450137 | 0.221 | 0.110 | 0.000 | <0.001% |
| chr11_442089_C_T | chr11:442089 | 0.097 | 0.093 | 0.344 | 0.016% |
| chr11_450155_A_T | chr11:450155 | 0.153 | 0.308 | 0.340 | 0.0026% |
| chr11_450167_G_C | chr11:450167 | -0.118 | -0.065 | -0.340 | 0.0013% |
| chr11_450565_C_T | chr11:450565 | 0.020 | 0.049 | 0.304 | — |
| chr11_450580_A_G | chr11:450580 | -0.046 | -0.048 | -0.304 | — |
| chr11_450583_G_T | chr11:450583 | 0.010 | 0.029 | 0.304 | — |
| chr11_441951_T_C | chr11:441951 | 0.034 | 0.023 | 0.333 | <0.001% |
| chr11_448346_G_A | chr11:448346 | 0.210 | 0.029 | -0.118 | 0.0026% |
| chr11_442189_C_T | chr11:442189 | -0.209 | -0.111 | -0.073 | 0.0013% |
| chr11_442018_C_G | chr11:442018 | 0.106 | 0.065 | 0.330 | 0.0039% |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.