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MEGF6

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near MEGF6

chr1:3,387,950..3,711,508, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr1_3410329_C_G	chr1:3410329	-1.000	-0.334	-1.000	<0.001%
chr1_3410334_G_A	chr1:3410334	-1.000	-0.281	-1.000	0.0013%
chr1_3423671_G_A	chr1:3423671	1.000	1.000	1.000	0.0033%
chr1_3410332_C_T	chr1:3410332	-1.000	-0.321	-1.000	<0.001%
chr1_3424883_G_T	chr1:3424883	-0.842	-0.675	-1.000	0.0013%
chr1_3410322_C_T	chr1:3410322	-0.947	-0.273	-0.993	0.449%
chr1_3423635_G_C	chr1:3423635	-0.619	-0.941	-1.000	<0.001%
chr1_3423640_G_A	chr1:3423640	0.831	0.872	1.000	<0.001%
chr1_3424873_G_A	chr1:3424873	-0.569	-0.510	-1.000	<0.001%
chr1_3423573_G_C	chr1:3423573	-0.278	-0.428	-1.000	<0.001%
chr1_3423572_T_C	chr1:3423572	0.598	0.580	0.863	<0.001%
chr1_3423636_G_T	chr1:3423636	-0.431	-0.530	-0.928	0.0020%
chr1_3424822_C_G	chr1:3424822	0.537	0.133	0.484	0.0014%
chr1_3423695_C_T	chr1:3423695	-0.487	-0.564	-0.850	0.508%
chr1_3423636_G_C	chr1:3423636	-0.410	-0.511	-0.830	0.0026%
chr1_3423624_G_T	chr1:3423624	-0.501	-0.415	-0.490	<0.001%
chr1_3423522_C_A	chr1:3423522	-0.445	-0.609	-0.791	<0.001%
chr1_3424821_C_T	chr1:3424821	0.484	0.096	0.278	<0.001%
chr1_3423591_C_G	chr1:3423591	-0.482	-0.559	-0.745	<0.001%
chr1_3424823_C_A	chr1:3424823	0.457	0.085	0.271	<0.001%
chr1_3423620_C_T	chr1:3423620	-0.287	-0.535	-0.693	<0.001%
chr1_3423610_G_T	chr1:3423610	0.355	0.369	0.667	<0.001%
chr1_3423707_G_A	chr1:3423707	-0.214	-0.304	-0.608	0.0072%
chr1_3403540_C_G	chr1:3403540	0.235	0.187	0.598	<0.001%
chr1_3410317_C_T	chr1:3410317	-0.367	-0.102	-0.399	0.0013%
chr1_3423561_G_A	chr1:3423561	-0.297	-0.407	-0.582	0.0033%
chr1_3423670_C_T	chr1:3423670	-0.357	-0.548	-0.582	<0.001%
chr1_3410292_G_C	chr1:3410292	-0.363	-0.064	-0.330	<0.001%
chr1_3423495_G_A	chr1:3423495	0.357	0.179	0.451	0.014%
chr1_3403556_G_A	chr1:3403556	0.269	0.216	0.562	0.0020%
chr1_3410285_C_G	chr1:3410285	0.342	0.075	0.268	0.0013%
chr1_3423560_C_G	chr1:3423560	-0.190	-0.238	-0.542	<0.001%
chr1_3423609_C_T	chr1:3423609	-0.148	-0.206	-0.516	0.0046%
chr1_3423466_G_A	chr1:3423466	-0.324	-0.435	-0.431	<0.001%
chr1_3410282_C_T	chr1:3410282	0.318	0.040	0.232	<0.001%
chr1_3423667_G_A	chr1:3423667	-0.295	-0.463	-0.497	0.0026%
chr1_3423523_G_A	chr1:3423523	0.311	0.363	0.464	0.011%
chr1_3423632_C_T	chr1:3423632	-0.289	-0.260	-0.484	0.0046%
chr1_3423701_C_T	chr1:3423701	-0.171	-0.227	-0.471	<0.001%
chr1_3424824_T_G	chr1:3424824	0.294	0.075	0.255	<0.001%
chr1_3424882_A_C	chr1:3424882	0.184	0.169	0.458	<0.001%
chr1_3423397_C_G	chr1:3423397	0.213	0.070	0.444	<0.001%
chr1_3414219_G_C	chr1:3414219	0.080	0.117	0.441	<0.001%
chr1_3424827_G_C	chr1:3424827	0.271	0.072	0.239	<0.001%
chr1_3423624_G_A	chr1:3423624	0.270	0.211	0.373	0.028%
chr1_3423382_C_T	chr1:3423382	-0.162	-0.267	-0.425	0.0013%
chr1_3423628_G_A	chr1:3423628	0.144	0.318	0.425	0.016%
chr1_3423544_C_T	chr1:3423544	-0.262	-0.002	-0.209	0.0033%
chr1_3423722_G_A	chr1:3423722	-0.262	-0.294	-0.366	<0.001%
chr1_3423522_C_T	chr1:3423522	-0.237	-0.345	-0.412	0.0013%
chr1_3423534_C_G	chr1:3423534	0.260	0.235	0.314	<0.001%
chr1_3423666_G_C	chr1:3423666	-0.243	-0.420	-0.412	0.0020%
chr1_3423669_A_G	chr1:3423669	0.247	0.415	0.327	<0.001%
chr1_3423567_A_T	chr1:3423567	0.245	0.188	0.379	0.065%
chr1_3423381_C_T	chr1:3423381	-0.110	-0.182	-0.373	<0.001%
chr1_3423569_C_T	chr1:3423569	0.173	0.230	0.353	<0.001%
chr1_3423552_A_G	chr1:3423552	-0.167	-0.327	-0.346	96.3%
chr1_3423488_C_T	chr1:3423488	-0.176	-0.305	-0.340	<0.001%
chr1_3410439_G_T	chr1:3410439	-0.041	-0.042	-0.333	<0.001%
chr1_3423633_G_A	chr1:3423633	-0.208	-0.256	-0.229	0.0059%
chr1_3423545_G_A	chr1:3423545	-0.144	-0.182	-0.314	<0.001%
chr1_3423550_T_C	chr1:3423550	-0.163	-0.281	-0.314	<0.001%
chr1_3423557_G_A	chr1:3423557	-0.194	-0.195	-0.072	0.0013%
chr1_3423610_G_A	chr1:3423610	0.087	0.235	0.307	0.0053%
chr1_3423632_C_G	chr1:3423632	0.186	0.391	-0.065	<0.001%
chr1_3423617_C_T	chr1:3423617	0.179	0.077	0.144	0.0013%
chr1_3410404_T_A	chr1:3410404	-0.097	-0.011	-0.281	<0.001%
chr1_3423399_C_A	chr1:3423399	-0.174	-0.201	-0.281	0.0013%
chr1_3423479_A_G	chr1:3423479	0.176	0.053	0.196	<0.001%
chr1_3423357_C_G	chr1:3423357	-0.097	-0.204	-0.275	3.25%
chr1_3423493_C_T	chr1:3423493	-0.139	-0.136	-0.275	<0.001%
chr1_3423609_C_A	chr1:3423609	-0.091	-0.097	-0.268	<0.001%
chr1_3423671_G_T	chr1:3423671	-0.165	-0.252	-0.268	4.55%
chr1_3410339_G_C	chr1:3410339	-0.162	-0.075	-0.131	0.011%
chr1_3423403_G_A	chr1:3423403	0.029	-0.251	-0.255	0.014%
chr1_3423658_C_T	chr1:3423658	-0.159	-0.265	-0.229	0.0085%
chr1_3423364_G_A	chr1:3423364	-0.052	-0.094	-0.248	<0.001%
chr1_3423547_G_A	chr1:3423547	-0.153	-0.073	-0.216	<0.001%
chr1_3389548_G_A	chr1:3389548	0.109	0.120	0.237	0.0013%
chr1_3423499_A_C	chr1:3423499	-0.148	-0.227	-0.176	<0.001%
chr1_3423621_A_G	chr1:3423621	0.041	-0.056	0.235	<0.001%
chr1_3423432_C_T	chr1:3423432	0.145	0.107	0.105	0.0026%
chr1_3403571_G_A	chr1:3403571	0.132	0.073	0.229	<0.001%
chr1_3423416_G_C	chr1:3423416	0.144	0.081	0.124	<0.001%
chr1_3423436_A_T	chr1:3423436	0.012	-0.008	0.229	<0.001%
chr1_3423936_G_A	chr1:3423936	0.106	0.078	0.205	—
chr1_3414363_A_G	chr1:3414363	-0.031	-0.056	-0.225	<0.001%
chr1_3423985_C_A	chr1:3423985	0.104	0.063	0.199	—
chr1_3410318_G_A	chr1:3410318	0.138	0.038	0.118	0.0020%
chr1_3423971_C_A	chr1:3423971	0.110	0.079	0.152	—
chr1_3403541_C_G	chr1:3403541	-0.091	-0.038	-0.216	0.0013%
chr1_3423359_G_A	chr1:3423359	-0.127	-0.201	-0.216	1.27%
chr1_3423316_G_T	chr1:3423316	-0.051	-0.096	-0.209	2.44%
chr1_3423532_G_A	chr1:3423532	-0.132	-0.206	-0.176	<0.001%
chr1_3423590_C_T	chr1:3423590	0.132	0.105	-0.105	0.0020%
chr1_3403546_A_G	chr1:3403546	-0.080	-0.024	-0.206	0.016%
chr1_3410229_A_C	chr1:3410229	0.130	0.022	0.085	<0.001%
chr1_3423508_C_A	chr1:3423508	-0.082	-0.179	-0.203	<0.001%
chr1_3423528_G_A	chr1:3423528	-0.052	-0.085	-0.203	<0.001%
chr1_3423898_C_G	chr1:3423898	-0.041	-0.028	-0.181	0.0026%
chr1_3389710_C_A	chr1:3389710	0.127	0.121	0.046	0.108%
chr1_3414238_G_T	chr1:3414238	-0.026	-0.033	-0.199	0.0026%
chr1_3423394_G_A	chr1:3423394	0.125	0.026	0.137	<0.001%
chr1_3423560_C_T	chr1:3423560	0.016	0.059	-0.196	<0.001%
chr1_3423647_C_T	chr1:3423647	-0.124	-0.174	-0.137	<0.001%
chr1_3410292_G_A	chr1:3410292	-0.115	-0.014	-0.124	0.083%
chr1_3423312_C_A	chr1:3423312	0.101	0.137	0.183	<0.001%
chr1_3423320_G_A	chr1:3423320	-0.040	-0.093	-0.183	<0.001%
chr1_3423319_C_T	chr1:3423319	-0.018	-0.091	-0.176	0.0046%
chr1_3423733_G_A	chr1:3423733	-0.080	-0.104	-0.176	<0.001%
chr1_3423547_G_C	chr1:3423547	0.109	0.093	0.085	<0.001%
chr1_3423493_C_G	chr1:3423493	-0.108	-0.081	-0.131	<0.001%
chr1_3423414_T_C	chr1:3423414	0.107	0.166	0.163	<0.001%
chr1_3423602_T_C	chr1:3423602	0.031	0.246	0.170	<0.001%
chr1_3423826_T_C	chr1:3423826	-0.019	-0.038	-0.170	<0.001%
chr1_3423898_C_A	chr1:3423898	-0.055	-0.038	-0.152	—
chr1_3423489_C_T	chr1:3423489	0.105	0.096	0.157	0.0013%
chr1_3410265_T_C	chr1:3410265	0.103	0.026	0.059	<0.001%
chr1_3423490_G_A	chr1:3423490	-0.057	-0.118	-0.163	0.0013%
chr1_3423774_C_T	chr1:3423774	-0.080	-0.058	-0.163	<0.001%
chr1_3423474_T_G	chr1:3423474	-0.099	-0.251	-0.092	0.0013%
chr1_3423458_C_A	chr1:3423458	0.097	0.080	0.144	<0.001%
chr1_3424903_C_A	chr1:3424903	0.069	0.050	0.150	0.0020%
chr1_3423868_T_A	chr1:3423868	0.075	0.021	0.117	—
chr1_3423405_G_T	chr1:3423405	0.091	0.137	0.046	<0.001%
chr1_3423417_C_T	chr1:3423417	-0.040	-0.062	-0.144	<0.001%
chr1_3423864_G_T	chr1:3423864	-0.054	-0.009	-0.129	—
chr1_3424813_T_C	chr1:3424813	0.006	0.000	0.144	0.0013%
chr1_3389799_G_C	chr1:3389799	-0.057	-0.060	0.141	0.0013%
chr1_3414251_G_C	chr1:3414251	0.038	0.022	0.141	<0.001%
chr1_3423581_G_A	chr1:3423581	-0.089	-0.121	-0.105	<0.001%
chr1_3389717_C_T	chr1:3389717	0.052	0.042	-0.139	0.0013%
chr1_3410291_C_T	chr1:3410291	-0.012	-0.010	-0.137	<0.001%
chr1_3410314_G_A	chr1:3410314	-0.072	-0.022	-0.137	0.0013%
chr1_3423345_C_T	chr1:3423345	0.076	0.083	0.137	0.026%
chr1_3423944_C_A	chr1:3423944	-0.017	-0.018	-0.123	—
chr1_3424764_T_G	chr1:3424764	0.070	0.002	0.137	<0.001%
chr1_3424819_G_C	chr1:3424819	-0.085	-0.006	-0.082	<0.001%
chr1_3424872_C_T	chr1:3424872	0.058	0.069	0.134	0.0039%
chr1_3423398_C_G	chr1:3423398	-0.084	-0.181	-0.046	0.013%
chr1_3389630_G_A	chr1:3389630	0.083	0.067	0.078	0.0013%
chr1_3423931_C_A	chr1:3423931	-0.006	-0.019	-0.117	—
chr1_3423934_A_C	chr1:3423934	0.012	0.008	0.117	—
chr1_3423944_C_T	chr1:3423944	-0.022	-0.011	-0.117	—
chr1_3410380_G_A	chr1:3410380	-0.081	0.008	-0.098	0.0013%
chr1_3389678_G_C	chr1:3389678	-0.013	-0.024	-0.127	0.0013%
chr1_3423358_C_T	chr1:3423358	-0.080	-0.208	-0.105	0.0020%
chr1_3424815_T_C	chr1:3424815	0.019	0.024	0.127	0.0014%
chr1_3410358_C_A	chr1:3410358	0.079	0.022	0.010	0.0020%
chr1_3423402_C_G	chr1:3423402	-0.079	-0.005	-0.085	0.0079%
chr1_3410238_A_G	chr1:3410238	-0.078	-0.021	-0.088	0.0046%
chr1_3410371_G_A	chr1:3410371	0.078	-0.013	0.029	<0.001%
chr1_3423872_A_T	chr1:3423872	-0.012	-0.023	-0.111	—
chr1_3423878_A_C	chr1:3423878	0.016	0.009	0.111	—
chr1_3423898_C_T	chr1:3423898	-0.060	0.005	-0.111	0.0013%
chr1_3424848_G_A	chr1:3424848	-0.057	-0.045	-0.124	0.0053%
chr1_3423391_G_T	chr1:3423391	-0.077	-0.010	-0.039	<0.001%
chr1_3410261_C_A	chr1:3410261	0.076	0.018	-0.098	0.021%
chr1_3389762_T_A	chr1:3389762	0.074	0.081	-0.077	<0.001%
chr1_3403612_G_C	chr1:3403612	0.000	0.022	-0.118	<0.001%
chr1_3423433_G_C	chr1:3423433	-0.056	-0.027	-0.118	0.0053%
chr1_3423864_G_A	chr1:3423864	-0.015	-0.001	-0.105	—
chr1_3423944_C_G	chr1:3423944	-0.023	-0.009	-0.105	—
chr1_3423983_C_T	chr1:3423983	0.044	0.023	0.105	—
chr1_3424771_G_A	chr1:3424771	0.001	-0.021	-0.118	<0.001%
chr1_3424840_G_T	chr1:3424840	-0.013	-0.018	-0.118	<0.001%
chr1_3424847_C_T	chr1:3424847	0.001	-0.026	-0.118	0.141%
chr1_3389668_C_A	chr1:3389668	0.071	0.094	-0.116	<0.001%
chr1_3423469_C_T	chr1:3423469	-0.072	-0.097	-0.072	<0.001%
chr1_3423762_C_T	chr1:3423762	0.072	0.072	0.085	0.020%
chr1_3423892_T_A	chr1:3423892	0.058	0.065	0.029	—
chr1_3410207_A_C	chr1:3410207	-0.070	-0.003	0.056	0.015%
chr1_3410242_G_C	chr1:3410242	0.000	-0.043	-0.111	<0.001%
chr1_3423494_C_T	chr1:3423494	-0.053	-0.062	-0.111	0.0072%
chr1_3423977_A_G	chr1:3423977	0.011	0.038	0.099	—
chr1_3424885_C_T	chr1:3424885	-0.020	-0.030	-0.111	<0.001%
chr1_3403556_G_C	chr1:3403556	0.053	0.027	0.108	<0.001%
chr1_3410232_C_G	chr1:3410232	-0.068	-0.016	-0.062	13.4%
chr1_3414252_G_A	chr1:3414252	0.037	0.021	0.108	<0.001%
chr1_3423406_T_C	chr1:3423406	0.068	0.115	0.105	<0.001%
chr1_3423142_T_G	chr1:3423142	-0.001	0.026	0.105	0.0046%
chr1_3423705_C_T	chr1:3423705	-0.065	-0.129	-0.105	78.3%
chr1_3423733_G_C	chr1:3423733	0.058	0.032	0.105	0.0020%
chr1_3423914_G_C	chr1:3423914	0.000	0.008	0.094	—
chr1_3423931_C_G	chr1:3423931	-0.031	-0.028	-0.094	—
chr1_3424901_G_A	chr1:3424901	0.023	0.058	0.105	<0.001%
chr1_3410186_T_G	chr1:3410186	-0.065	-0.013	-0.065	0.0013%
chr1_3423402_C_A	chr1:3423402	-0.065	-0.014	-0.052	0.0046%
chr1_3410267_G_A	chr1:3410267	0.062	0.032	-0.023	<0.001%
chr1_3410300_C_G	chr1:3410300	-0.062	0.000	0.007	<0.001%
chr1_3410370_G_A	chr1:3410370	0.062	0.002	0.029	0.0092%
chr1_3423618_G_A	chr1:3423618	-0.062	-0.045	0.033	0.0046%
chr1_3423901_A_G	chr1:3423901	0.035	0.050	-0.088	—
chr1_3423921_C_T	chr1:3423921	-0.002	0.004	-0.088	0.0013%
chr1_3423925_T_A	chr1:3423925	0.011	0.009	0.088	—
chr1_3423974_A_T	chr1:3423974	-0.017	-0.018	-0.088	—
chr1_3389610_G_C	chr1:3389610	0.042	0.066	0.096	0.0013%
chr1_3410310_G_A	chr1:3410310	0.060	0.027	0.036	<0.001%
chr1_3410361_G_A	chr1:3410361	-0.025	-0.014	-0.095	<0.001%
chr1_3423706_C_T	chr1:3423706	-0.060	-0.075	-0.092	0.0020%

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.