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NKX2-3

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near NKX2-3

chr10:99,432,941..99,636,523, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr10_99620894_C_G	chr10:99620894	-0.351	-0.353	-0.889	—
chr10_99620875_C_G	chr10:99620875	0.086	0.078	-0.713	—
chr10_99620879_G_T	chr10:99620879	0.331	0.403	0.269	—
chr10_99620841_C_A	chr10:99620841	0.328	0.322	0.234	—
chr10_99620870_C_A	chr10:99620870	-0.083	-0.146	0.561	—
chr10_99620864_C_G	chr10:99620864	-0.301	-0.179	0.164	—
chr10_99620851_G_A	chr10:99620851	0.252	0.275	0.456	—
chr10_99620853_C_G	chr10:99620853	-0.013	-0.058	0.433	—
chr10_99620841_C_G	chr10:99620841	0.238	0.116	0.023	<0.001%
chr10_99620841_C_T	chr10:99620841	0.228	0.101	-0.047	0.0013%
chr10_99620842_C_T	chr10:99620842	0.225	0.156	-0.012	0.0020%
chr10_99620851_G_C	chr10:99620851	-0.225	-0.063	0.164	0.0013%
chr10_99620879_G_C	chr10:99620879	0.225	0.128	-0.269	—
chr10_99620843_T_G	chr10:99620843	0.222	0.045	0.047	—
chr10_99620842_C_G	chr10:99620842	0.199	0.181	0.035	<0.001%
chr10_99620890_G_T	chr10:99620890	-0.023	0.103	0.339	—
chr10_99620898_G_A	chr10:99620898	-0.192	0.000	0.035	—
chr10_99620843_T_A	chr10:99620843	0.189	0.106	0.012	—
chr10_99620879_G_A	chr10:99620879	0.185	0.113	0.012	0.0039%
chr10_99620843_T_C	chr10:99620843	-0.182	0.003	0.047	—
chr10_99620877_C_G	chr10:99620877	-0.182	-0.164	-0.211	—
chr10_99620845_A_C	chr10:99620845	0.175	0.144	-0.269	—
chr10_99620894_C_A	chr10:99620894	0.166	-0.091	0.129	—
chr10_99620897_G_C	chr10:99620897	-0.166	-0.151	0.000	—
chr10_99620865_G_A	chr10:99620865	0.159	0.065	0.023	—
chr10_99620876_G_A	chr10:99620876	-0.036	-0.028	0.269	—
chr10_99620890_G_A	chr10:99620890	-0.050	0.040	0.269	—
chr10_99620892_G_C	chr10:99620892	-0.073	-0.141	0.269	—
chr10_99620896_G_C	chr10:99620896	-0.149	-0.196	-0.012	—
chr10_99620895_G_A	chr10:99620895	0.013	-0.063	0.257	—
chr10_99620864_C_T	chr10:99620864	-0.139	-0.081	-0.012	<0.001%
chr10_99620877_C_T	chr10:99620877	-0.136	-0.008	0.152	<0.001%
chr10_99620889_G_T	chr10:99620889	-0.136	-0.065	0.000	—
chr10_99620853_C_A	chr10:99620853	-0.050	0.008	0.234	—
chr10_99620891_G_C	chr10:99620891	-0.050	-0.096	0.234	—
chr10_99620892_G_T	chr10:99620892	-0.119	-0.191	0.234	—
chr10_99620855_G_C	chr10:99620855	0.129	0.043	-0.105	—
chr10_99620866_G_C	chr10:99620866	0.129	0.068	-0.105	—
chr10_99620896_G_T	chr10:99620896	-0.129	-0.060	0.058	—
chr10_99620860_G_A	chr10:99620860	-0.023	0.055	-0.222	—
chr10_99620867_T_A	chr10:99620867	-0.123	-0.068	0.222	—
chr10_99620868_C_A	chr10:99620868	0.116	0.116	0.222	<0.001%
chr10_99620890_G_C	chr10:99620890	-0.109	-0.108	0.222	—
chr10_99620892_G_A	chr10:99620892	-0.116	-0.186	0.222	—
chr10_99620878_G_T	chr10:99620878	0.123	0.118	0.129	—
chr10_99620893_G_T	chr10:99620893	-0.123	-0.136	0.070	—
chr10_99620896_G_A	chr10:99620896	-0.123	-0.166	0.117	—
chr10_99620844_C_G	chr10:99620844	0.119	0.101	0.012	—
chr10_99620854_T_C	chr10:99620854	-0.119	-0.060	0.094	—
chr10_99620861_C_A	chr10:99620861	-0.106	-0.086	-0.211	—
chr10_99620891_G_T	chr10:99620891	-0.093	-0.121	0.211	—
chr10_99620844_C_A	chr10:99620844	0.113	0.106	0.023	—
chr10_99620865_G_T	chr10:99620865	0.113	0.053	0.070	<0.001%
chr10_99620874_G_C	chr10:99620874	-0.030	0.005	0.199	—
chr10_99620876_G_C	chr10:99620876	-0.060	-0.013	0.199	—
chr10_99620878_G_C	chr10:99620878	0.113	0.098	0.129	—
chr10_99620881_A_C	chr10:99620881	0.113	0.048	-0.058	—
chr10_99620881_A_G	chr10:99620881	-0.089	0.050	0.199	—
chr10_99620885_C_G	chr10:99620885	-0.113	-0.121	-0.105	—
chr10_99620895_G_C	chr10:99620895	-0.113	-0.126	0.117	—
chr10_99620880_G_C	chr10:99620880	0.109	0.123	0.023	—
chr10_99620889_G_A	chr10:99620889	-0.109	0.076	0.152	—
chr10_99620842_C_A	chr10:99620842	0.106	0.081	-0.152	—
chr10_99620858_G_C	chr10:99620858	0.079	0.023	-0.187	—
chr10_99620866_G_A	chr10:99620866	0.106	0.053	-0.094	—
chr10_99620868_C_T	chr10:99620868	0.060	0.113	-0.187	0.0026%
chr10_99620893_G_A	chr10:99620893	-0.106	-0.176	0.070	—
chr10_99620848_A_C	chr10:99620848	-0.103	-0.126	-0.047	—
chr10_99620888_C_T	chr10:99620888	0.103	0.003	0.070	0.0013%
chr10_99620845_A_T	chr10:99620845	0.036	0.040	-0.175	—
chr10_99620849_G_T	chr10:99620849	0.017	-0.018	0.175	<0.001%
chr10_99620857_A_T	chr10:99620857	0.040	0.134	0.175	—
chr10_99620865_G_C	chr10:99620865	0.099	0.050	-0.023	<0.001%
chr10_99620870_C_G	chr10:99620870	0.003	0.013	0.175	—
chr10_99620891_G_A	chr10:99620891	-0.020	-0.010	0.175	—
chr10_99620897_G_T	chr10:99620897	-0.099	-0.060	0.117	—
chr10_99620884_G_C	chr10:99620884	-0.096	-0.028	0.035	—
chr10_99620889_G_C	chr10:99620889	-0.096	-0.023	0.105	—
chr10_99620893_G_C	chr10:99620893	-0.096	-0.214	0.035	—
chr10_99620869_C_T	chr10:99620869	-0.040	0.013	-0.164	—
chr10_99620897_G_A	chr10:99620897	-0.017	0.081	0.164	—
chr10_99620885_C_A	chr10:99620885	-0.089	-0.073	0.047	—
chr10_99620849_G_A	chr10:99620849	-0.086	-0.055	0.023	—
chr10_99620855_G_A	chr10:99620855	-0.086	0.025	-0.023	—
chr10_99620861_C_T	chr10:99620861	-0.086	0.003	-0.047	—
chr10_99620866_G_T	chr10:99620866	0.076	0.091	-0.152	—
chr10_99620883_C_A	chr10:99620883	-0.086	-0.025	-0.058	—
chr10_99620895_G_T	chr10:99620895	-0.040	-0.068	0.152	—
chr10_99620863_G_C	chr10:99620863	0.083	0.076	-0.070	—
chr10_99620878_G_A	chr10:99620878	0.083	0.184	0.129	—
chr10_99620882_T_A	chr10:99620882	-0.083	0.038	-0.047	—
chr10_99620863_G_T	chr10:99620863	0.053	0.068	-0.140	—
chr10_99620869_C_A	chr10:99620869	0.010	0.174	0.140	<0.001%
chr10_99620871_T_C	chr10:99620871	-0.050	-0.068	0.140	—
chr10_99620880_G_T	chr10:99620880	0.053	0.154	0.140	—
chr10_99620887_T_C	chr10:99620887	-0.017	-0.030	-0.140	—
chr10_99620846_C_G	chr10:99620846	0.076	0.045	-0.105	—
chr10_99620854_T_A	chr10:99620854	0.076	0.091	0.023	—
chr10_99620881_A_T	chr10:99620881	-0.076	-0.008	0.070	—
chr10_99620848_A_G	chr10:99620848	-0.023	-0.008	-0.129	0.0039%
chr10_99620857_A_C	chr10:99620857	0.023	0.023	0.129	—
chr10_99620859_A_T	chr10:99620859	0.023	0.063	0.129	—
chr10_99620871_T_G	chr10:99620871	-0.073	-0.083	-0.012	—
chr10_99620883_C_G	chr10:99620883	-0.063	-0.015	-0.129	—
chr10_99620852_C_T	chr10:99620852	-0.070	-0.035	-0.105	—
chr10_99620861_C_G	chr10:99620861	0.070	0.164	-0.035	—
chr10_99620886_G_A	chr10:99620886	-0.070	-0.063	0.012	—
chr10_99620858_G_A	chr10:99620858	0.000	0.025	-0.117	—
chr10_99620859_A_C	chr10:99620859	0.066	0.023	0.047	—
chr10_99620860_G_T	chr10:99620860	0.060	0.101	-0.117	—
chr10_99620862_T_A	chr10:99620862	0.066	0.023	-0.012	—
chr10_99620867_T_G	chr10:99620867	0.066	-0.008	-0.023	—
chr10_99620868_C_G	chr10:99620868	0.066	0.050	-0.012	—
chr10_99620872_G_A	chr10:99620872	-0.020	0.035	0.117	—
chr10_99620875_C_T	chr10:99620875	-0.066	-0.005	0.105	—
chr10_99620884_G_T	chr10:99620884	-0.060	-0.023	-0.117	—
chr10_99620846_C_T	chr10:99620846	-0.063	-0.028	-0.070	—
chr10_99620894_C_T	chr10:99620894	-0.063	-0.146	0.070	—
chr10_99620847_T_A	chr10:99620847	-0.043	-0.086	-0.105	—
chr10_99620850_C_A	chr10:99620850	-0.056	-0.005	-0.105	—
chr10_99620854_T_G	chr10:99620854	0.060	0.015	-0.070	—
chr10_99620855_G_T	chr10:99620855	-0.060	0.030	-0.035	—
chr10_99620856_C_G	chr10:99620856	-0.060	-0.018	0.023	<0.001%
chr10_99620860_G_C	chr10:99620860	0.036	0.106	0.105	—
chr10_99620882_T_C	chr10:99620882	-0.036	-0.013	0.105	—
chr10_99620887_T_G	chr10:99620887	-0.043	-0.096	-0.105	—
chr10_99620856_C_A	chr10:99620856	-0.056	0.048	-0.035	—
chr10_99620863_G_A	chr10:99620863	0.056	0.060	0.012	—
chr10_99549735_T_A	chr10:99549735	-0.015	0.031	0.094	—
chr10_99549735_T_G	chr10:99549735	-0.008	0.021	0.094	—
chr10_99620844_C_T	chr10:99620844	0.053	0.033	-0.094	<0.001%
chr10_99620847_T_G	chr10:99620847	-0.053	-0.058	0.047	—
chr10_99620856_C_T	chr10:99620856	-0.053	0.050	-0.023	—
chr10_99620862_T_G	chr10:99620862	0.000	-0.020	-0.094	—
chr10_99620867_T_C	chr10:99620867	0.023	0.005	0.094	0.0039%
chr10_99620869_C_G	chr10:99620869	0.010	0.033	-0.094	<0.001%
chr10_99620882_T_G	chr10:99620882	0.003	-0.010	-0.094	—
chr10_99620883_C_T	chr10:99620883	-0.053	0.053	-0.058	—
chr10_99620888_C_A	chr10:99620888	0.013	0.048	0.094	—
chr10_99620886_G_T	chr10:99620886	-0.050	0.003	-0.023	—
chr10_99539089_G_C	chr10:99539089	-0.032	0.052	0.082	—
chr10_99549784_C_G	chr10:99549784	0.009	0.006	0.082	—
chr10_99620858_G_T	chr10:99620858	0.046	0.071	0.023	—
chr10_99620859_A_G	chr10:99620859	0.026	0.043	0.082	—
chr10_99620872_G_T	chr10:99620872	-0.043	0.035	0.082	0.0013%
chr10_99620876_G_T	chr10:99620876	-0.013	-0.040	0.082	—
chr10_99539109_C_A	chr10:99539109	0.005	-0.011	-0.076	—
chr10_99620849_G_C	chr10:99620849	-0.043	0.018	0.047	—
chr10_99620888_C_G	chr10:99620888	-0.017	-0.123	0.070	—
chr10_99549801_C_G	chr10:99549801	0.008	-0.004	0.070	—
chr10_99620845_A_G	chr10:99620845	0.040	-0.028	0.023	—
chr10_99620846_C_A	chr10:99620846	0.003	0.010	-0.070	—
chr10_99620847_T_C	chr10:99620847	0.013	-0.040	0.070	—
chr10_99620852_C_A	chr10:99620852	-0.040	0.000	0.000	—
chr10_99620857_A_G	chr10:99620857	-0.020	-0.005	0.070	0.0033%
chr10_99620870_C_T	chr10:99620870	-0.007	0.005	0.070	0.0020%
chr10_99549782_T_C	chr10:99549782	-0.009	-0.011	-0.067	—
chr10_99549729_T_A	chr10:99549729	-0.016	0.033	0.064	—
chr10_99549754_T_C	chr10:99549754	-0.014	-0.010	-0.064	—
chr10_99538988_C_A	chr10:99538988	-0.008	-0.004	-0.058	—
chr10_99539039_C_G	chr10:99539039	-0.006	0.003	-0.058	—
chr10_99539049_C_G	chr10:99539049	0.009	0.005	0.058	—
chr10_99539098_C_A	chr10:99539098	-0.007	-0.010	-0.058	—
chr10_99539107_G_C	chr10:99539107	0.004	0.001	0.058	—
chr10_99620848_A_T	chr10:99620848	-0.003	0.015	0.058	—
chr10_99620853_C_T	chr10:99620853	-0.013	0.000	-0.058	<0.001%
chr10_99620864_C_A	chr10:99620864	0.033	0.071	0.000	—
chr10_99620885_C_T	chr10:99620885	-0.020	-0.040	0.058	0.0026%
chr10_99549729_T_G	chr10:99549729	-0.003	0.013	0.056	—
chr10_99620880_G_A	chr10:99620880	0.030	0.096	0.000	—
chr10_99538991_A_C	chr10:99538991	0.006	0.008	0.053	—
chr10_99539009_C_A	chr10:99539009	-0.013	-0.006	-0.053	—
chr10_99539010_A_G	chr10:99539010	0.000	-0.004	0.053	—
chr10_99539025_A_C	chr10:99539025	0.006	0.005	0.053	—
chr10_99539026_A_C	chr10:99539026	0.009	0.009	0.053	—
chr10_99539029_C_G	chr10:99539029	0.005	0.003	0.053	—
chr10_99539098_C_G	chr10:99539098	-0.001	-0.010	-0.053	—
chr10_99549777_T_G	chr10:99549777	0.004	-0.009	0.053	—
chr10_99549782_T_G	chr10:99549782	0.008	-0.005	0.053	—
chr10_99549769_T_G	chr10:99549769	0.006	-0.006	0.050	—
chr10_99549788_T_G	chr10:99549788	0.007	-0.004	0.050	—
chr10_99549800_C_G	chr10:99549800	0.011	0.003	0.050	—
chr10_99620884_G_A	chr10:99620884	-0.007	0.086	0.047	—
chr10_99538991_A_G	chr10:99538991	0.007	0.005	0.047	—
chr10_99539036_C_G	chr10:99539036	0.003	-0.001	0.047	—
chr10_99539069_T_G	chr10:99539069	0.005	0.005	0.047	—
chr10_99539090_A_C	chr10:99539090	0.005	0.009	0.047	—
chr10_99539105_T_G	chr10:99539105	0.003	-0.005	0.047	—
chr10_99539109_C_G	chr10:99539109	0.006	-0.006	-0.047	—
chr10_99539116_C_G	chr10:99539116	0.004	-0.001	0.047	—
chr10_99549741_C_G	chr10:99549741	-0.004	0.010	0.047	—
chr10_99549766_C_G	chr10:99549766	0.008	0.001	0.047	—
chr10_99549783_C_G	chr10:99549783	0.006	0.004	0.047	—
chr10_99620850_C_G	chr10:99620850	-0.020	0.023	-0.047	—
chr10_99620852_C_G	chr10:99620852	-0.026	-0.060	-0.012	—
chr10_99620862_T_C	chr10:99620862	0.013	-0.030	-0.047	<0.001%
chr10_99620872_G_C	chr10:99620872	-0.020	-0.018	0.047	—
chr10_99620887_T_A	chr10:99620887	0.007	-0.008	0.047	—
chr10_99539092_A_T	chr10:99539092	0.026	0.006	0.006	—
chr10_99549756_C_G	chr10:99549756	0.022	0.003	0.044	—

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.