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NLGN2
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near NLGN2
chr17:7,307,844..7,519,860, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr17_7315383_A_T | chr17:7315383 | -0.979 | -0.657 | -1.000 | — |
| chr17_7315384_C_A | chr17:7315384 | -0.756 | -0.552 | -1.000 | — |
| chr17_7315383_A_C | chr17:7315383 | -0.884 | -0.650 | -1.000 | — |
| chr17_7315382_C_G | chr17:7315382 | -0.693 | -0.458 | -1.000 | — |
| chr17_7315388_C_T | chr17:7315388 | -0.657 | -0.331 | -1.000 | — |
| chr17_7315386_T_C | chr17:7315386 | -0.597 | -0.419 | -1.000 | — |
| chr17_7315386_T_G | chr17:7315386 | -0.598 | -0.391 | -1.000 | — |
| chr17_7315388_C_G | chr17:7315388 | -0.648 | -0.330 | -1.000 | — |
| chr17_7315387_C_G | chr17:7315387 | -0.672 | -0.343 | -0.888 | — |
| chr17_7315383_A_G | chr17:7315383 | -0.520 | -0.501 | -1.000 | — |
| chr17_7315386_T_A | chr17:7315386 | -0.567 | -0.350 | -1.000 | — |
| chr17_7315388_C_A | chr17:7315388 | -0.616 | -0.273 | -1.000 | <0.001% |
| chr17_7394891_A_C | chr17:7394891 | -0.498 | -0.379 | -1.000 | — |
| chr17_7315407_T_C | chr17:7315407 | -0.328 | -0.270 | -1.000 | — |
| chr17_7315410_C_A | chr17:7315410 | -0.233 | -0.179 | -1.000 | — |
| chr17_7347935_C_T | chr17:7347935 | 0.593 | 0.734 | 0.899 | — |
| chr17_7315410_C_G | chr17:7315410 | -0.256 | -0.234 | -1.000 | — |
| chr17_7315382_C_T | chr17:7315382 | -0.331 | -0.390 | -1.000 | — |
| chr17_7315387_C_T | chr17:7315387 | -0.575 | -0.296 | -0.787 | — |
| chr17_7315381_T_G | chr17:7315381 | -0.316 | -0.470 | -0.961 | — |
| chr17_7315408_T_C | chr17:7315408 | -0.200 | -0.147 | -0.944 | — |
| chr17_7315410_C_T | chr17:7315410 | -0.190 | -0.164 | -0.927 | — |
| chr17_7394885_A_C | chr17:7394885 | -0.128 | -0.268 | -0.899 | — |
| chr17_7315380_G_T | chr17:7315380 | -0.192 | -0.378 | -0.893 | — |
| chr17_7315384_C_G | chr17:7315384 | -0.379 | -0.316 | -0.876 | — |
| chr17_7315407_T_G | chr17:7315407 | -0.390 | -0.301 | -0.871 | — |
| chr17_7394917_T_G | chr17:7394917 | 0.503 | 0.477 | 0.697 | — |
| chr17_7315380_G_C | chr17:7315380 | -0.233 | -0.334 | -0.854 | — |
| chr17_7315452_G_C | chr17:7315452 | -0.207 | -0.035 | -0.854 | — |
| chr17_7347940_C_G | chr17:7347940 | 0.492 | 0.623 | 0.820 | — |
| chr17_7394914_G_T | chr17:7394914 | -0.077 | -0.273 | -0.831 | — |
| chr17_7315408_T_G | chr17:7315408 | -0.131 | -0.194 | -0.826 | — |
| chr17_7315389_G_A | chr17:7315389 | -0.441 | -0.268 | -0.792 | <0.001% |
| chr17_7394892_C_G | chr17:7394892 | -0.461 | -0.261 | -0.629 | — |
| chr17_7315464_G_C | chr17:7315464 | -0.425 | -0.037 | 0.067 | — |
| chr17_7315389_G_C | chr17:7315389 | -0.421 | -0.232 | -0.635 | — |
| chr17_7315408_T_A | chr17:7315408 | -0.075 | -0.087 | -0.713 | — |
| chr17_7347939_T_G | chr17:7347939 | 0.387 | 0.526 | 0.708 | — |
| chr17_7315453_A_C | chr17:7315453 | -0.402 | -0.335 | -0.444 | — |
| chr17_7315441_G_C | chr17:7315441 | 0.400 | 0.341 | 0.270 | — |
| chr17_7394885_A_T | chr17:7394885 | -0.161 | -0.229 | -0.685 | — |
| chr17_7315453_A_T | chr17:7315453 | -0.385 | -0.296 | -0.438 | — |
| chr17_7315381_T_C | chr17:7315381 | -0.108 | -0.332 | -0.657 | — |
| chr17_7315452_G_A | chr17:7315452 | -0.382 | -0.165 | -0.163 | — |
| chr17_7315451_G_T | chr17:7315451 | -0.380 | -0.285 | -0.247 | — |
| chr17_7315453_A_G | chr17:7315453 | -0.380 | -0.317 | -0.489 | — |
| chr17_7315387_C_A | chr17:7315387 | -0.374 | -0.175 | -0.573 | — |
| chr17_7315390_G_A | chr17:7315390 | -0.262 | -0.103 | -0.629 | — |
| chr17_7315451_G_C | chr17:7315451 | -0.366 | -0.239 | -0.017 | — |
| chr17_7315450_C_G | chr17:7315450 | -0.359 | -0.219 | -0.292 | — |
| chr17_7315409_C_T | chr17:7315409 | -0.252 | -0.128 | -0.612 | — |
| chr17_7315451_G_A | chr17:7315451 | -0.356 | -0.251 | -0.354 | — |
| chr17_7315450_C_T | chr17:7315450 | -0.354 | -0.239 | -0.365 | <0.001% |
| chr17_7394905_C_G | chr17:7394905 | -0.038 | 0.171 | 0.607 | <0.001% |
| chr17_7315379_C_G | chr17:7315379 | -0.182 | -0.209 | -0.584 | — |
| chr17_7315412_G_A | chr17:7315412 | -0.131 | -0.142 | -0.584 | — |
| chr17_7394886_G_A | chr17:7394886 | 0.102 | 0.212 | 0.584 | — |
| chr17_7315422_G_C | chr17:7315422 | 0.334 | 0.188 | 0.320 | — |
| chr17_7315381_T_A | chr17:7315381 | -0.146 | -0.314 | -0.567 | — |
| chr17_7315454_A_G | chr17:7315454 | -0.251 | -0.280 | -0.551 | — |
| chr17_7394920_A_G | chr17:7394920 | 0.067 | 0.227 | 0.551 | — |
| chr17_7315454_A_T | chr17:7315454 | -0.211 | -0.215 | -0.545 | — |
| chr17_7315380_G_A | chr17:7315380 | -0.052 | -0.240 | -0.539 | 0.0072% |
| chr17_7315416_C_G | chr17:7315416 | -0.315 | -0.147 | -0.337 | 0.0013% |
| chr17_7315432_C_G | chr17:7315432 | -0.315 | -0.132 | -0.483 | — |
| chr17_7315378_G_C | chr17:7315378 | -0.128 | -0.187 | -0.528 | 0.0013% |
| chr17_7315429_G_C | chr17:7315429 | -0.305 | -0.175 | -0.287 | — |
| chr17_7315409_C_G | chr17:7315409 | -0.302 | -0.193 | -0.281 | — |
| chr17_7347939_T_A | chr17:7347939 | 0.293 | 0.404 | 0.511 | — |
| chr17_7315406_C_G | chr17:7315406 | -0.115 | -0.092 | -0.506 | — |
| chr17_7315432_C_A | chr17:7315432 | -0.295 | -0.144 | -0.236 | — |
| chr17_7394897_T_G | chr17:7394897 | 0.113 | 0.219 | 0.506 | — |
| chr17_7315377_T_G | chr17:7315377 | -0.126 | -0.193 | -0.500 | — |
| chr17_7315454_A_C | chr17:7315454 | -0.279 | -0.275 | -0.500 | — |
| chr17_7315452_G_T | chr17:7315452 | -0.290 | -0.161 | -0.124 | — |
| chr17_7347929_G_T | chr17:7347929 | 0.289 | 0.263 | 0.287 | — |
| chr17_7394893_A_C | chr17:7394893 | -0.257 | -0.152 | -0.494 | — |
| chr17_7394915_C_G | chr17:7394915 | -0.284 | -0.150 | -0.270 | — |
| chr17_7394888_G_C | chr17:7394888 | -0.121 | -0.159 | -0.483 | — |
| chr17_7394911_T_A | chr17:7394911 | -0.282 | -0.214 | -0.393 | — |
| chr17_7315409_C_A | chr17:7315409 | -0.161 | -0.101 | -0.478 | — |
| chr17_7315456_C_G | chr17:7315456 | -0.279 | -0.146 | -0.011 | — |
| chr17_7315413_A_G | chr17:7315413 | 0.275 | 0.455 | 0.382 | — |
| chr17_7394891_A_G | chr17:7394891 | -0.175 | -0.155 | -0.472 | — |
| chr17_7394894_C_T | chr17:7394894 | -0.200 | -0.149 | -0.472 | — |
| chr17_7315422_G_T | chr17:7315422 | 0.266 | 0.123 | 0.326 | — |
| chr17_7315448_G_T | chr17:7315448 | 0.262 | 0.112 | 0.191 | — |
| chr17_7394888_G_T | chr17:7394888 | -0.079 | -0.134 | -0.449 | — |
| chr17_7347899_A_C | chr17:7347899 | 0.261 | 0.069 | 0.090 | — |
| chr17_7315418_C_T | chr17:7315418 | -0.259 | -0.099 | -0.006 | <0.001% |
| chr17_7315455_G_T | chr17:7315455 | -0.259 | -0.282 | -0.303 | — |
| chr17_7394914_G_C | chr17:7394914 | -0.123 | -0.199 | -0.438 | — |
| chr17_7394916_T_A | chr17:7394916 | -0.252 | -0.081 | -0.157 | — |
| chr17_7315503_G_T | chr17:7315503 | -0.144 | 0.035 | -0.427 | — |
| chr17_7315439_G_A | chr17:7315439 | -0.159 | -0.054 | -0.421 | — |
| chr17_7315422_G_A | chr17:7315422 | 0.243 | 0.160 | 0.303 | — |
| chr17_7315433_T_C | chr17:7315433 | -0.243 | -0.208 | -0.275 | — |
| chr17_7394893_A_G | chr17:7394893 | 0.205 | 0.141 | 0.416 | — |
| chr17_7394914_G_A | chr17:7394914 | -0.136 | -0.155 | -0.416 | — |
| chr17_7394911_T_G | chr17:7394911 | -0.238 | -0.188 | -0.258 | — |
| chr17_7315505_G_C | chr17:7315505 | -0.234 | 0.096 | -0.236 | — |
| chr17_7394917_T_A | chr17:7394917 | 0.234 | 0.262 | 0.360 | — |
| chr17_7315411_G_A | chr17:7315411 | -0.062 | -0.096 | -0.399 | — |
| chr17_7315379_C_A | chr17:7315379 | 0.231 | 0.026 | 0.393 | — |
| chr17_7347903_T_C | chr17:7347903 | -0.061 | -0.073 | -0.393 | — |
| chr17_7394890_A_G | chr17:7394890 | -0.125 | -0.086 | -0.393 | — |
| chr17_7315385_A_G | chr17:7315385 | -0.226 | -0.139 | -0.140 | — |
| chr17_7315413_A_C | chr17:7315413 | -0.220 | -0.171 | -0.388 | — |
| chr17_7347905_C_G | chr17:7347905 | 0.164 | 0.171 | 0.388 | — |
| chr17_7394912_T_G | chr17:7394912 | -0.226 | -0.213 | -0.337 | — |
| chr17_7315428_C_G | chr17:7315428 | -0.223 | -0.121 | -0.185 | — |
| chr17_7315499_G_A | chr17:7315499 | 0.223 | 0.232 | 0.191 | 0.0013% |
| chr17_7315500_A_C | chr17:7315500 | 0.002 | -0.045 | 0.382 | — |
| chr17_7394919_C_G | chr17:7394919 | -0.154 | -0.102 | -0.382 | — |
| chr17_7315461_T_G | chr17:7315461 | -0.221 | -0.120 | -0.039 | — |
| chr17_7315414_G_A | chr17:7315414 | -0.220 | -0.068 | -0.287 | — |
| chr17_7347876_A_C | chr17:7347876 | -0.038 | -0.093 | -0.376 | — |
| chr17_7315467_G_A | chr17:7315467 | -0.218 | -0.111 | -0.258 | 0.0013% |
| chr17_7315411_G_C | chr17:7315411 | -0.098 | -0.147 | -0.371 | — |
| chr17_7315505_G_T | chr17:7315505 | -0.144 | 0.023 | -0.371 | — |
| chr17_7394892_C_A | chr17:7394892 | -0.144 | 0.083 | 0.371 | — |
| chr17_7394908_T_A | chr17:7394908 | -0.215 | -0.191 | -0.371 | — |
| chr17_7347921_G_C | chr17:7347921 | 0.215 | 0.089 | 0.247 | — |
| chr17_7315430_A_C | chr17:7315430 | -0.170 | -0.202 | -0.365 | — |
| chr17_7315439_G_T | chr17:7315439 | -0.113 | -0.108 | -0.365 | — |
| chr17_7315440_T_A | chr17:7315440 | -0.203 | -0.132 | -0.365 | — |
| chr17_7315434_C_G | chr17:7315434 | -0.210 | -0.029 | -0.303 | — |
| chr17_7315440_T_C | chr17:7315440 | -0.121 | -0.171 | -0.360 | — |
| chr17_7315468_G_T | chr17:7315468 | 0.007 | 0.103 | 0.360 | — |
| chr17_7315508_C_T | chr17:7315508 | -0.016 | 0.204 | 0.360 | — |
| chr17_7394887_C_T | chr17:7394887 | -0.041 | -0.120 | -0.360 | — |
| chr17_7394907_C_G | chr17:7394907 | -0.210 | -0.057 | -0.034 | — |
| chr17_7394913_G_T | chr17:7394913 | -0.120 | -0.183 | -0.360 | — |
| chr17_7394915_C_A | chr17:7394915 | -0.198 | -0.174 | -0.360 | — |
| chr17_7315475_G_A | chr17:7315475 | -0.208 | -0.057 | 0.124 | — |
| chr17_7347940_C_A | chr17:7347940 | 0.208 | 0.247 | 0.298 | — |
| chr17_7315447_A_C | chr17:7315447 | -0.034 | -0.232 | -0.354 | — |
| chr17_7315448_G_A | chr17:7315448 | 0.207 | 0.042 | 0.174 | <0.001% |
| chr17_7315455_G_C | chr17:7315455 | 0.054 | -0.165 | -0.354 | — |
| chr17_7315438_G_C | chr17:7315438 | -0.205 | -0.190 | 0.169 | — |
| chr17_7347920_A_C | chr17:7347920 | 0.203 | 0.047 | 0.163 | — |
| chr17_7394887_C_A | chr17:7394887 | 0.016 | -0.116 | -0.348 | — |
| chr17_7394896_C_A | chr17:7394896 | -0.092 | -0.145 | -0.348 | — |
| chr17_7394910_A_C | chr17:7394910 | -0.203 | -0.205 | -0.303 | — |
| chr17_7394908_T_G | chr17:7394908 | -0.200 | -0.144 | -0.191 | — |
| chr17_7315447_A_T | chr17:7315447 | -0.198 | -0.233 | -0.253 | — |
| chr17_7315450_C_A | chr17:7315450 | -0.198 | -0.128 | -0.112 | — |
| chr17_7315377_T_A | chr17:7315377 | -0.102 | -0.128 | -0.337 | — |
| chr17_7394909_C_G | chr17:7394909 | 0.197 | 0.173 | 0.270 | — |
| chr17_7315481_T_A | chr17:7315481 | -0.193 | -0.098 | -0.034 | — |
| chr17_7315506_A_G | chr17:7315506 | -0.193 | -0.068 | -0.225 | — |
| chr17_7347920_A_G | chr17:7347920 | 0.193 | 0.045 | 0.219 | — |
| chr17_7315377_T_C | chr17:7315377 | -0.064 | -0.102 | -0.326 | — |
| chr17_7347920_A_T | chr17:7347920 | 0.189 | 0.052 | 0.169 | — |
| chr17_7315376_C_T | chr17:7315376 | 0.146 | 0.108 | 0.320 | <0.001% |
| chr17_7315443_A_C | chr17:7315443 | 0.041 | 0.094 | 0.320 | <0.001% |
| chr17_7347935_C_G | chr17:7347935 | 0.185 | 0.202 | 0.247 | — |
| chr17_7347937_C_A | chr17:7347937 | 0.185 | 0.183 | 0.202 | — |
| chr17_7315385_A_C | chr17:7315385 | -0.184 | -0.144 | -0.253 | — |
| chr17_7315412_G_C | chr17:7315412 | -0.111 | -0.139 | -0.315 | — |
| chr17_7315412_G_T | chr17:7315412 | -0.056 | -0.104 | -0.315 | — |
| chr17_7315456_C_A | chr17:7315456 | -0.184 | -0.127 | -0.146 | 0.0013% |
| chr17_7315457_G_A | chr17:7315457 | 0.113 | -0.062 | 0.315 | — |
| chr17_7394885_A_G | chr17:7394885 | -0.039 | -0.108 | -0.315 | — |
| chr17_7394910_A_T | chr17:7394910 | -0.111 | -0.175 | -0.315 | — |
| chr17_7394918_C_A | chr17:7394918 | 0.184 | 0.144 | 0.281 | — |
| chr17_7315441_G_A | chr17:7315441 | -0.182 | -0.086 | -0.107 | — |
| chr17_7315428_C_A | chr17:7315428 | -0.180 | -0.062 | -0.152 | — |
| chr17_7315440_T_G | chr17:7315440 | -0.180 | -0.125 | -0.298 | — |
| chr17_7315505_G_A | chr17:7315505 | -0.180 | 0.116 | -0.124 | — |
| chr17_7394917_T_C | chr17:7394917 | 0.179 | 0.189 | 0.281 | — |
| chr17_7315415_T_C | chr17:7315415 | -0.036 | -0.208 | -0.303 | — |
| chr17_7315417_A_G | chr17:7315417 | -0.167 | -0.225 | -0.303 | — |
| chr17_7315419_G_T | chr17:7315419 | 0.177 | 0.096 | 0.163 | — |
| chr17_7315473_C_G | chr17:7315473 | -0.082 | -0.063 | -0.303 | — |
| chr17_7315493_C_G | chr17:7315493 | -0.003 | -0.050 | 0.303 | — |
| chr17_7347922_G_C | chr17:7347922 | 0.177 | 0.098 | 0.219 | — |
| chr17_7394911_T_C | chr17:7394911 | -0.177 | -0.173 | -0.213 | — |
| chr17_7315364_G_A | chr17:7315364 | 0.175 | 0.078 | 0.062 | — |
| chr17_7315401_G_A | chr17:7315401 | 0.148 | 0.151 | 0.298 | 0.0020% |
| chr17_7315424_C_T | chr17:7315424 | 0.174 | 0.134 | 0.258 | 0.0020% |
| chr17_7315407_T_A | chr17:7315407 | -0.079 | -0.089 | -0.292 | — |
| chr17_7315424_C_G | chr17:7315424 | 0.170 | 0.135 | 0.090 | — |
| chr17_7315427_C_T | chr17:7315427 | 0.170 | 0.161 | 0.146 | — |
| chr17_7315449_G_T | chr17:7315449 | -0.125 | -0.196 | -0.292 | — |
| chr17_7315456_C_T | chr17:7315456 | 0.007 | 0.073 | 0.292 | — |
| chr17_7315469_G_T | chr17:7315469 | -0.005 | -0.024 | -0.292 | — |
| chr17_7315503_G_C | chr17:7315503 | -0.102 | 0.030 | -0.292 | — |
| chr17_7347916_C_G | chr17:7347916 | 0.170 | 0.039 | 0.174 | — |
| chr17_7394892_C_T | chr17:7394892 | -0.170 | -0.058 | -0.079 | — |
| chr17_7394907_C_A | chr17:7394907 | -0.170 | -0.059 | -0.180 | <0.001% |
| chr17_7394909_C_A | chr17:7394909 | -0.169 | -0.084 | -0.157 | — |
| chr17_7315379_C_T | chr17:7315379 | -0.064 | -0.151 | -0.287 | — |
| chr17_7347909_T_C | chr17:7347909 | 0.003 | -0.077 | -0.287 | — |
| chr17_7315372_G_A | chr17:7315372 | 0.166 | 0.178 | 0.208 | — |
| chr17_7347922_G_T | chr17:7347922 | 0.166 | 0.113 | 0.202 | — |
| chr17_7394905_C_A | chr17:7394905 | -0.166 | -0.065 | -0.236 | — |
| chr17_7315419_G_C | chr17:7315419 | 0.164 | 0.006 | 0.011 | — |
| chr17_7315436_C_A | chr17:7315436 | 0.164 | 0.224 | -0.011 | — |
| chr17_7315439_G_C | chr17:7315439 | -0.018 | -0.077 | -0.281 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.