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NLGN2
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near NLGN2
chr17:7,307,844..7,519,860, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR ▾ | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr17_7315383_A_T | chr17:7315383 | -38,208 | -8,352 | -37,376 | — |
| chr17_7315383_A_C | chr17:7315383 | -34,496 | -8,256 | -32,512 | — |
| chr17_7315384_C_A | chr17:7315384 | -29,504 | -7,008 | -37,760 | — |
| chr17_7315382_C_G | chr17:7315382 | -27,072 | -5,824 | -34,176 | — |
| chr17_7315387_C_G | chr17:7315387 | -26,240 | -4,352 | -20,224 | — |
| chr17_7315388_C_T | chr17:7315388 | -25,664 | -4,200 | -32,512 | — |
| chr17_7315388_C_G | chr17:7315388 | -25,280 | -4,192 | -28,800 | — |
| chr17_7315388_C_A | chr17:7315388 | -24,064 | -3,472 | -25,088 | 6.6e-6 |
| chr17_7315386_T_G | chr17:7315386 | -23,360 | -4,968 | -30,208 | — |
| chr17_7315386_T_C | chr17:7315386 | -23,296 | -5,328 | -31,872 | — |
| chr17_7347935_C_T | chr17:7347935 | 23,168 | 9,328 | 20,480 | — |
| chr17_7315387_C_T | chr17:7315387 | -22,464 | -3,760 | -17,920 | — |
| chr17_7315386_T_A | chr17:7315386 | -22,144 | -4,448 | -25,600 | — |
| chr17_7315383_A_G | chr17:7315383 | -20,288 | -6,360 | -25,856 | — |
| chr17_7394917_T_G | chr17:7394917 | 19,648 | 6,064 | 15,872 | — |
| chr17_7394891_A_C | chr17:7394891 | -19,456 | -4,816 | -24,064 | — |
| chr17_7347940_C_G | chr17:7347940 | 19,200 | 7,920 | 18,688 | — |
| chr17_7394892_C_G | chr17:7394892 | -17,984 | -3,312 | -14,336 | — |
| chr17_7315389_G_A | chr17:7315389 | -17,216 | -3,408 | -18,048 | 6.6e-6 |
| chr17_7315464_G_C | chr17:7315464 | -16,576 | -464 | 1,536 | — |
| chr17_7315389_G_C | chr17:7315389 | -16,448 | -2,952 | -14,464 | — |
| chr17_7315453_A_C | chr17:7315453 | -15,680 | -4,256 | -10,112 | — |
| chr17_7315441_G_C | chr17:7315441 | 15,616 | 4,336 | 6,144 | — |
| chr17_7315407_T_G | chr17:7315407 | -15,232 | -3,824 | -19,840 | — |
| chr17_7347939_T_G | chr17:7347939 | 15,104 | 6,688 | 16,128 | — |
| chr17_7315453_A_T | chr17:7315453 | -15,040 | -3,760 | -9,984 | — |
| chr17_7315452_G_A | chr17:7315452 | -14,912 | -2,096 | -3,712 | — |
| chr17_7315451_G_T | chr17:7315451 | -14,848 | -3,616 | -5,632 | — |
| chr17_7315453_A_G | chr17:7315453 | -14,848 | -4,032 | -11,136 | — |
| chr17_7315384_C_G | chr17:7315384 | -14,784 | -4,016 | -19,968 | — |
| chr17_7315387_C_A | chr17:7315387 | -14,592 | -2,224 | -13,056 | — |
| chr17_7315451_G_C | chr17:7315451 | -14,272 | -3,040 | -384 | — |
| chr17_7315450_C_G | chr17:7315450 | -14,016 | -2,784 | -6,656 | — |
| chr17_7315451_G_A | chr17:7315451 | -13,888 | -3,184 | -8,064 | — |
| chr17_7315450_C_T | chr17:7315450 | -13,824 | -3,040 | -8,320 | 6.6e-6 |
| chr17_7315422_G_C | chr17:7315422 | 13,056 | 2,384 | 7,296 | — |
| chr17_7315382_C_T | chr17:7315382 | -12,928 | -4,960 | -22,912 | — |
| chr17_7315407_T_C | chr17:7315407 | -12,800 | -3,424 | -23,552 | — |
| chr17_7315381_T_G | chr17:7315381 | -12,352 | -5,968 | -21,888 | — |
| chr17_7315416_C_G | chr17:7315416 | -12,288 | -1,872 | -7,680 | 1.3e-5 |
| chr17_7315432_C_G | chr17:7315432 | -12,288 | -1,680 | -11,008 | — |
| chr17_7315429_G_C | chr17:7315429 | -11,904 | -2,224 | -6,528 | — |
| chr17_7315409_C_G | chr17:7315409 | -11,776 | -2,456 | -6,400 | — |
| chr17_7315432_C_A | chr17:7315432 | -11,520 | -1,824 | -5,376 | — |
| chr17_7347939_T_A | chr17:7347939 | 11,456 | 5,136 | 11,648 | — |
| chr17_7315452_G_T | chr17:7315452 | -11,328 | -2,048 | -2,816 | — |
| chr17_7347929_G_T | chr17:7347929 | 11,264 | 3,344 | 6,528 | — |
| chr17_7394915_C_G | chr17:7394915 | -11,072 | -1,904 | -6,144 | — |
| chr17_7394911_T_A | chr17:7394911 | -11,008 | -2,720 | -8,960 | — |
| chr17_7315454_A_C | chr17:7315454 | -10,880 | -3,488 | -11,392 | — |
| chr17_7315456_C_G | chr17:7315456 | -10,880 | -1,856 | -256 | — |
| chr17_7315413_A_G | chr17:7315413 | 10,752 | 5,776 | 8,704 | — |
| chr17_7315422_G_T | chr17:7315422 | 10,368 | 1,568 | 7,424 | — |
| chr17_7315390_G_A | chr17:7315390 | -10,240 | -1,312 | -14,336 | — |
| chr17_7315448_G_T | chr17:7315448 | 10,240 | 1,424 | 4,352 | — |
| chr17_7347899_A_C | chr17:7347899 | 10,176 | 880 | 2,048 | — |
| chr17_7315418_C_T | chr17:7315418 | -10,112 | -1,264 | -128 | 6.6e-6 |
| chr17_7315455_G_T | chr17:7315455 | -10,112 | -3,584 | -6,912 | — |
| chr17_7394893_A_C | chr17:7394893 | -10,048 | -1,936 | -11,264 | — |
| chr17_7315410_C_G | chr17:7315410 | -9,984 | -2,976 | -23,040 | — |
| chr17_7315409_C_T | chr17:7315409 | -9,856 | -1,624 | -13,952 | — |
| chr17_7394916_T_A | chr17:7394916 | -9,856 | -1,024 | -3,584 | — |
| chr17_7315454_A_G | chr17:7315454 | -9,792 | -3,552 | -12,544 | — |
| chr17_7315422_G_A | chr17:7315422 | 9,472 | 2,032 | 6,912 | — |
| chr17_7315433_T_C | chr17:7315433 | -9,472 | -2,640 | -6,272 | — |
| chr17_7394911_T_G | chr17:7394911 | -9,280 | -2,384 | -5,888 | — |
| chr17_7315505_G_C | chr17:7315505 | -9,152 | 1,216 | -5,376 | — |
| chr17_7394917_T_A | chr17:7394917 | 9,152 | 3,328 | 8,192 | — |
| chr17_7315410_C_A | chr17:7315410 | -9,088 | -2,280 | -23,168 | — |
| chr17_7315380_G_C | chr17:7315380 | -9,088 | -4,240 | -19,456 | — |
| chr17_7315379_C_A | chr17:7315379 | 9,024 | 328 | 8,960 | — |
| chr17_7315385_A_G | chr17:7315385 | -8,832 | -1,760 | -3,200 | — |
| chr17_7394912_T_G | chr17:7394912 | -8,832 | -2,704 | -7,680 | — |
| chr17_7315428_C_G | chr17:7315428 | -8,704 | -1,536 | -4,224 | — |
| chr17_7315499_G_A | chr17:7315499 | 8,704 | 2,944 | 4,352 | 1.3e-5 |
| chr17_7315461_T_G | chr17:7315461 | -8,640 | -1,520 | -896 | — |
| chr17_7315413_A_C | chr17:7315413 | -8,576 | -2,176 | -8,832 | — |
| chr17_7315414_G_A | chr17:7315414 | -8,576 | -864 | -6,528 | — |
| chr17_7315467_G_A | chr17:7315467 | -8,512 | -1,408 | -5,888 | 1.3e-5 |
| chr17_7394908_T_A | chr17:7394908 | -8,384 | -2,432 | -8,448 | — |
| chr17_7347921_G_C | chr17:7347921 | 8,384 | 1,136 | 5,632 | — |
| chr17_7315454_A_T | chr17:7315454 | -8,256 | -2,736 | -12,416 | — |
| chr17_7315434_C_G | chr17:7315434 | -8,192 | -368 | -6,912 | — |
| chr17_7394907_C_G | chr17:7394907 | -8,192 | -720 | -768 | — |
| chr17_7315475_G_A | chr17:7315475 | -8,128 | -720 | 2,816 | — |
| chr17_7347940_C_A | chr17:7347940 | 8,128 | 3,136 | 6,784 | — |
| chr17_7315452_G_C | chr17:7315452 | -8,064 | -448 | -19,456 | — |
| chr17_7315448_G_A | chr17:7315448 | 8,064 | 528 | 3,968 | 6.6e-6 |
| chr17_7394893_A_G | chr17:7394893 | 8,000 | 1,792 | 9,472 | — |
| chr17_7315438_G_C | chr17:7315438 | -8,000 | -2,416 | 3,840 | — |
| chr17_7315440_T_A | chr17:7315440 | -7,936 | -1,680 | -8,320 | — |
| chr17_7347920_A_C | chr17:7347920 | 7,936 | 592 | 3,712 | — |
| chr17_7394910_A_C | chr17:7394910 | -7,936 | -2,608 | -6,912 | — |
| chr17_7315408_T_C | chr17:7315408 | -7,808 | -1,872 | -21,504 | — |
| chr17_7394894_C_T | chr17:7394894 | -7,808 | -1,888 | -10,752 | — |
| chr17_7394908_T_G | chr17:7394908 | -7,808 | -1,824 | -4,352 | — |
| chr17_7394915_C_A | chr17:7394915 | -7,744 | -2,208 | -8,192 | — |
| chr17_7315447_A_T | chr17:7315447 | -7,744 | -2,960 | -5,760 | — |
| chr17_7315450_C_A | chr17:7315450 | -7,744 | -1,632 | -2,560 | — |
| chr17_7394909_C_G | chr17:7394909 | 7,680 | 2,192 | 6,144 | — |
| chr17_7315481_T_A | chr17:7315481 | -7,552 | -1,248 | -768 | — |
| chr17_7315506_A_G | chr17:7315506 | -7,552 | -864 | -5,120 | — |
| chr17_7347920_A_G | chr17:7347920 | 7,552 | 576 | 4,992 | — |
| chr17_7315380_G_T | chr17:7315380 | -7,488 | -4,800 | -20,352 | — |
| chr17_7315410_C_T | chr17:7315410 | -7,424 | -2,088 | -21,120 | — |
| chr17_7347920_A_T | chr17:7347920 | 7,360 | 656 | 3,840 | — |
| chr17_7347935_C_G | chr17:7347935 | 7,232 | 2,560 | 5,632 | — |
| chr17_7347937_C_A | chr17:7347937 | 7,232 | 2,320 | 4,608 | — |
| chr17_7315385_A_C | chr17:7315385 | -7,168 | -1,832 | -5,760 | — |
| chr17_7315456_C_A | chr17:7315456 | -7,168 | -1,616 | -3,328 | 1.3e-5 |
| chr17_7394918_C_A | chr17:7394918 | 7,168 | 1,824 | 6,400 | — |
| chr17_7315379_C_G | chr17:7315379 | -7,104 | -2,656 | -13,312 | — |
| chr17_7315441_G_A | chr17:7315441 | -7,104 | -1,088 | -2,432 | — |
| chr17_7315428_C_A | chr17:7315428 | -7,040 | -784 | -3,456 | — |
| chr17_7315440_T_G | chr17:7315440 | -7,040 | -1,584 | -6,784 | — |
| chr17_7315505_G_A | chr17:7315505 | -7,040 | 1,472 | -2,816 | — |
| chr17_7394917_T_C | chr17:7394917 | 6,976 | 2,400 | 6,400 | — |
| chr17_7315419_G_T | chr17:7315419 | 6,912 | 1,216 | 3,712 | — |
| chr17_7347922_G_C | chr17:7347922 | 6,912 | 1,248 | 4,992 | — |
| chr17_7394911_T_C | chr17:7394911 | -6,912 | -2,192 | -4,864 | — |
| chr17_7394891_A_G | chr17:7394891 | -6,848 | -1,968 | -10,752 | — |
| chr17_7315364_G_A | chr17:7315364 | 6,848 | 992 | 1,408 | — |
| chr17_7315424_C_T | chr17:7315424 | 6,784 | 1,696 | 5,888 | 2.0e-5 |
| chr17_7315430_A_C | chr17:7315430 | -6,656 | -2,560 | -8,320 | — |
| chr17_7315424_C_G | chr17:7315424 | 6,656 | 1,712 | 2,048 | — |
| chr17_7315427_C_T | chr17:7315427 | 6,656 | 2,048 | 3,328 | — |
| chr17_7347916_C_G | chr17:7347916 | 6,656 | 496 | 3,968 | — |
| chr17_7394892_C_T | chr17:7394892 | -6,656 | -736 | -1,792 | — |
| chr17_7394907_C_A | chr17:7394907 | -6,656 | -752 | -4,096 | 6.6e-6 |
| chr17_7394909_C_A | chr17:7394909 | -6,592 | -1,072 | -3,584 | — |
| chr17_7315417_A_G | chr17:7315417 | -6,528 | -2,864 | -6,912 | — |
| chr17_7315372_G_A | chr17:7315372 | 6,464 | 2,256 | 4,736 | — |
| chr17_7347922_G_T | chr17:7347922 | 6,464 | 1,440 | 4,608 | — |
| chr17_7394905_C_A | chr17:7394905 | -6,464 | -832 | -5,376 | — |
| chr17_7347905_C_G | chr17:7347905 | 6,400 | 2,176 | 8,832 | — |
| chr17_7315419_G_C | chr17:7315419 | 6,400 | 80 | 256 | — |
| chr17_7315436_C_A | chr17:7315436 | 6,400 | 2,848 | -256 | — |
| chr17_7394885_A_T | chr17:7394885 | -6,272 | -2,912 | -15,616 | — |
| chr17_7315409_C_A | chr17:7315409 | -6,272 | -1,280 | -10,880 | — |
| chr17_7315439_G_A | chr17:7315439 | -6,208 | -688 | -9,600 | — |
| chr17_7394919_C_G | chr17:7394919 | -6,016 | -1,296 | -8,704 | — |
| chr17_7315401_G_A | chr17:7315401 | 5,760 | 1,920 | 6,784 | 2.0e-5 |
| chr17_7315381_T_A | chr17:7315381 | -5,696 | -3,984 | -12,928 | — |
| chr17_7315376_C_T | chr17:7315376 | 5,696 | 1,376 | 7,296 | 6.6e-6 |
| chr17_7315503_G_T | chr17:7315503 | -5,632 | 448 | -9,728 | — |
| chr17_7315505_G_T | chr17:7315505 | -5,632 | 288 | -8,448 | — |
| chr17_7394892_C_A | chr17:7394892 | -5,632 | 1,056 | 8,448 | — |
| chr17_7394914_G_A | chr17:7394914 | -5,312 | -1,968 | -9,472 | — |
| chr17_7315408_T_G | chr17:7315408 | -5,120 | -2,464 | -18,816 | — |
| chr17_7315412_G_A | chr17:7315412 | -5,120 | -1,808 | -13,312 | — |
| chr17_7394885_A_C | chr17:7394885 | -4,992 | -3,408 | -20,480 | — |
| chr17_7315378_G_C | chr17:7315378 | -4,992 | -2,376 | -12,032 | 1.3e-5 |
| chr17_7315377_T_G | chr17:7315377 | -4,928 | -2,448 | -11,392 | — |
| chr17_7394890_A_G | chr17:7394890 | -4,864 | -1,088 | -8,960 | — |
| chr17_7315449_G_T | chr17:7315449 | -4,864 | -2,496 | -6,656 | — |
| chr17_7394914_G_C | chr17:7394914 | -4,800 | -2,528 | -9,984 | — |
| chr17_7394888_G_C | chr17:7394888 | -4,736 | -2,016 | -11,008 | — |
| chr17_7315440_T_C | chr17:7315440 | -4,736 | -2,176 | -8,192 | — |
| chr17_7394913_G_T | chr17:7394913 | -4,672 | -2,320 | -8,192 | — |
| chr17_7315406_C_G | chr17:7315406 | -4,480 | -1,168 | -11,520 | — |
| chr17_7394897_T_G | chr17:7394897 | 4,416 | 2,784 | 11,520 | — |
| chr17_7315439_G_T | chr17:7315439 | -4,416 | -1,376 | -8,320 | — |
| chr17_7315457_G_A | chr17:7315457 | 4,416 | -784 | 7,168 | — |
| chr17_7315412_G_C | chr17:7315412 | -4,352 | -1,760 | -7,168 | — |
| chr17_7394910_A_T | chr17:7394910 | -4,352 | -2,224 | -7,168 | — |
| chr17_7315381_T_C | chr17:7315381 | -4,224 | -4,216 | -14,976 | — |
| chr17_7394886_G_A | chr17:7394886 | 3,968 | 2,688 | 13,312 | — |
| chr17_7315377_T_A | chr17:7315377 | -3,968 | -1,624 | -7,680 | — |
| chr17_7315503_G_C | chr17:7315503 | -3,968 | 384 | -6,656 | — |
| chr17_7315411_G_C | chr17:7315411 | -3,840 | -1,872 | -8,448 | — |
| chr17_7394896_C_A | chr17:7394896 | -3,584 | -1,840 | -7,936 | — |
| chr17_7315473_C_G | chr17:7315473 | -3,200 | -800 | -6,912 | — |
| chr17_7394888_G_T | chr17:7394888 | -3,072 | -1,696 | -10,240 | — |
| chr17_7315407_T_A | chr17:7315407 | -3,072 | -1,128 | -6,656 | — |
| chr17_7394914_G_T | chr17:7394914 | -3,008 | -3,472 | -18,944 | — |
| chr17_7315408_T_A | chr17:7315408 | -2,944 | -1,104 | -16,256 | — |
| chr17_7394920_A_G | chr17:7394920 | 2,624 | 2,880 | 12,544 | — |
| chr17_7315377_T_C | chr17:7315377 | -2,496 | -1,296 | -7,424 | — |
| chr17_7315379_C_T | chr17:7315379 | -2,496 | -1,912 | -6,528 | — |
| chr17_7315411_G_A | chr17:7315411 | -2,432 | -1,216 | -9,088 | — |
| chr17_7347903_T_C | chr17:7347903 | -2,368 | -928 | -8,960 | — |
| chr17_7315412_G_T | chr17:7315412 | -2,176 | -1,320 | -7,168 | — |
| chr17_7315455_G_C | chr17:7315455 | 2,112 | -2,096 | -8,064 | — |
| chr17_7315380_G_A | chr17:7315380 | -2,048 | -3,048 | -12,288 | 7.2e-5 |
| chr17_7394887_C_T | chr17:7394887 | -1,600 | -1,520 | -8,192 | — |
| chr17_7315443_A_C | chr17:7315443 | 1,600 | 1,200 | 7,296 | 6.6e-6 |
| chr17_7394885_A_G | chr17:7394885 | -1,536 | -1,376 | -7,168 | — |
| chr17_7394905_C_G | chr17:7394905 | -1,472 | 2,176 | 13,824 | 6.6e-6 |
| chr17_7347876_A_C | chr17:7347876 | -1,472 | -1,184 | -8,576 | — |
| chr17_7315415_T_C | chr17:7315415 | -1,408 | -2,648 | -6,912 | — |
| chr17_7315447_A_C | chr17:7315447 | -1,344 | -2,944 | -8,064 | — |
| chr17_7315439_G_C | chr17:7315439 | -704 | -976 | -6,400 | — |
| chr17_7315508_C_T | chr17:7315508 | -640 | 2,592 | 8,192 | — |
| chr17_7394887_C_A | chr17:7394887 | 640 | -1,472 | -7,936 | — |
| chr17_7315468_G_T | chr17:7315468 | 256 | 1,312 | 8,192 | — |
| chr17_7315456_C_T | chr17:7315456 | 256 | 928 | 6,656 | — |
| chr17_7315469_G_T | chr17:7315469 | -192 | -304 | -6,656 | — |
| chr17_7315493_C_G | chr17:7315493 | -128 | -640 | 6,912 | — |
| chr17_7347909_T_C | chr17:7347909 | 128 | -976 | -6,528 | — |
| chr17_7315500_A_C | chr17:7315500 | 64 | -576 | 8,704 | — |
Showing 200 of 200 in this window. Scores are the raw center bin Δ, ALT minus REF; click a column to sort.