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SCT

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near SCT

chr11:526,308..727,181, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr11_537477_G_C	chr11:537477	-0.563	-0.575	-1.000	0.0013%
chr11_537452_C_G	chr11:537452	-0.400	-0.307	-1.000	0.0013%
chr11_553518_A_G	chr11:553518	-0.390	-0.545	-1.000	0.0013%
chr11_551758_G_C	chr11:551758	0.658	0.291	0.817	<0.001%
chr11_537477_G_A	chr11:537477	-0.515	-0.380	-1.000	<0.001%
chr11_537430_C_G	chr11:537430	0.295	0.142	0.967	0.0013%
chr11_536116_T_C	chr11:536116	-0.140	-0.133	-0.954	<0.001%
chr11_537452_C_A	chr11:537452	-0.307	-0.235	-0.889	0.0026%
chr11_551112_C_T	chr11:551112	0.089	0.202	0.876	0.0013%
chr11_537455_A_G	chr11:537455	-0.528	-0.310	-0.797	<0.001%
chr11_551122_C_T	chr11:551122	0.068	0.150	0.791	<0.001%
chr11_551116_C_T	chr11:551116	0.091	0.160	0.739	<0.001%
chr11_537435_C_G	chr11:537435	0.095	0.062	-0.732	0.0020%
chr11_553517_G_C	chr11:553517	0.267	0.302	0.693	<0.001%
chr11_535724_G_A	chr11:535724	0.101	0.143	0.658	0.0013%
chr11_551115_C_T	chr11:551115	0.075	0.133	0.650	0.0039%
chr11_535726_G_A	chr11:535726	0.074	0.122	0.626	0.014%
chr11_553516_G_A	chr11:553516	0.248	0.369	0.621	<0.001%
chr11_553553_G_A	chr11:553553	-0.277	-0.361	-0.621	<0.001%
chr11_535923_T_C	chr11:535923	-0.064	-0.112	-0.601	<0.001%
chr11_537404_T_C	chr11:537404	-0.153	-0.075	-0.601	<0.001%
chr11_537417_C_A	chr11:537417	-0.093	-0.121	-0.601	0.0039%
chr11_537605_G_C	chr11:537605	0.058	0.097	0.575	<0.001%
chr11_536113_A_C	chr11:536113	-0.080	-0.070	-0.562	<0.001%
chr11_553442_G_A	chr11:553442	0.218	0.286	0.562	0.0026%
chr11_553454_G_T	chr11:553454	0.269	0.427	0.556	<0.001%
chr11_537429_C_G	chr11:537429	0.155	0.147	0.549	<0.001%
chr11_535777_G_A	chr11:535777	0.023	0.187	0.547	<0.001%
chr11_551104_T_C	chr11:551104	-0.085	-0.087	-0.529	<0.001%
chr11_535903_G_A	chr11:535903	0.010	0.083	0.523	0.0013%
chr11_535928_C_T	chr11:535928	0.023	0.075	0.523	<0.001%
chr11_537513_C_G	chr11:537513	-0.243	-0.227	-0.510	0.0059%
chr11_553542_T_G	chr11:553542	-0.292	-0.455	-0.510	0.0033%
chr11_553545_G_A	chr11:553545	-0.242	-0.342	-0.503	<0.001%
chr11_551365_C_T	chr11:551365	0.059	0.097	0.497	0.014%
chr11_544243_G_A	chr11:544243	0.029	0.168	0.490	<0.001%
chr11_535542_C_G	chr11:535542	0.307	0.053	0.163	<0.001%
chr11_535098_T_G	chr11:535098	-0.032	-0.061	-0.479	24.5%
chr11_551368_C_G	chr11:551368	0.073	0.105	0.474	0.0013%
chr11_535926_G_T	chr11:535926	0.016	0.077	0.471	<0.001%
chr11_537435_C_T	chr11:537435	0.138	0.158	0.471	<0.001%
chr11_553543_C_T	chr11:553543	-0.254	-0.382	-0.471	0.0033%
chr11_535744_G_A	chr11:535744	0.293	0.281	0.452	0.0033%
chr11_535925_C_T	chr11:535925	0.023	0.073	0.458	<0.001%
chr11_536029_C_A	chr11:536029	0.031	0.029	0.458	0.264%
chr11_537550_G_A	chr11:537550	-0.190	-0.091	-0.458	<0.001%
chr11_535653_A_C	chr11:535653	-0.136	-0.149	-0.453	0.0013%
chr11_553443_G_A	chr11:553443	0.147	0.177	0.444	0.0026%
chr11_551348_C_A	chr11:551348	0.091	0.072	0.441	<0.001%
chr11_535095_T_C	chr11:535095	-0.095	-0.034	-0.439	<0.001%
chr11_537483_A_G	chr11:537483	-0.276	-0.249	0.118	<0.001%
chr11_551117_C_T	chr11:551117	0.067	0.097	0.438	<0.001%
chr11_537506_C_G	chr11:537506	-0.148	-0.062	-0.431	<0.001%
chr11_537554_A_G	chr11:537554	-0.204	-0.086	-0.431	<0.001%
chr11_535474_G_T	chr11:535474	0.267	0.002	0.026	0.113%
chr11_537418_G_A	chr11:537418	-0.062	-0.016	-0.418	<0.001%
chr11_537428_C_G	chr11:537428	0.204	0.117	0.418	<0.001%
chr11_537500_A_C	chr11:537500	-0.029	-0.040	0.418	0.0053%
chr11_535113_G_A	chr11:535113	0.013	0.049	0.412	<0.001%
chr11_551347_C_A	chr11:551347	0.042	0.086	0.408	<0.001%
chr11_535875_C_T	chr11:535875	0.021	0.058	0.405	<0.001%
chr11_551347_C_G	chr11:551347	0.039	0.073	0.402	0.0013%
chr11_535086_G_A	chr11:535086	0.028	0.046	0.395	0.0013%
chr11_536134_A_C	chr11:536134	-0.043	-0.067	-0.392	<0.001%
chr11_537519_A_G	chr11:537519	0.074	0.058	0.392	0.0026%
chr11_535089_G_A	chr11:535089	0.032	0.047	0.386	<0.001%
chr11_535128_G_A	chr11:535128	0.037	0.043	0.380	0.0053%
chr11_536141_C_A	chr11:536141	0.041	0.038	0.379	0.0013%
chr11_537488_G_C	chr11:537488	-0.109	-0.081	-0.379	0.012%
chr11_535553_G_T	chr11:535553	-0.033	-0.065	0.377	<0.001%
chr11_535087_C_T	chr11:535087	0.025	0.035	0.367	0.0020%
chr11_535929_G_A	chr11:535929	0.027	0.053	0.366	0.0013%
chr11_535721_G_A	chr11:535721	0.008	0.101	0.363	<0.001%
chr11_535092_G_A	chr11:535092	0.003	0.051	0.359	0.0079%
chr11_551339_C_G	chr11:551339	0.038	0.099	0.356	<0.001%
chr11_535154_G_A	chr11:535154	0.025	0.035	0.355	0.0020%
chr11_535599_G_T	chr11:535599	0.105	0.116	0.355	0.0013%
chr11_535118_G_A	chr11:535118	0.022	0.040	0.355	<0.001%
chr11_535141_C_T	chr11:535141	0.028	0.042	0.351	0.242%
chr11_537485_G_C	chr11:537485	-0.221	-0.331	-0.209	<0.001%
chr11_535911_A_G	chr11:535911	-0.019	-0.043	-0.340	<0.001%
chr11_537424_C_T	chr11:537424	-0.052	-0.061	-0.340	<0.001%
chr11_553563_G_A	chr11:553563	0.209	0.267	0.340	<0.001%
chr11_535739_C_T	chr11:535739	0.212	0.194	0.318	0.0020%
chr11_535143_G_A	chr11:535143	0.038	0.037	0.330	<0.001%
chr11_535752_G_T	chr11:535752	-0.062	0.028	0.327	<0.001%
chr11_537507_G_A	chr11:537507	-0.097	-0.054	-0.327	0.638%
chr11_544253_C_G	chr11:544253	-0.031	-0.085	-0.320	<0.001%
chr11_535489_G_A	chr11:535489	0.201	0.030	0.130	<0.001%
chr11_535463_G_A	chr11:535463	0.199	0.016	0.094	10.4%
chr11_535503_A_G	chr11:535503	-0.199	-0.017	-0.194	0.0020%
chr11_536064_T_G	chr11:536064	-0.008	-0.061	-0.314	0.0013%
chr11_537456_T_C	chr11:537456	-0.198	-0.026	0.144	<0.001%
chr11_551323_G_A	chr11:551323	0.062	0.006	-0.310	<0.001%
chr11_535649_C_T	chr11:535649	0.155	0.166	0.305	24.1%
chr11_535091_C_A	chr11:535091	0.029	0.026	0.305	<0.001%
chr11_535152_G_A	chr11:535152	0.024	0.046	0.301	<0.001%
chr11_536024_G_T	chr11:536024	0.043	0.019	0.301	0.0046%
chr11_536036_G_A	chr11:536036	0.010	0.059	0.301	<0.001%
chr11_536084_C_T	chr11:536084	0.019	0.053	0.301	0.0066%
chr11_537493_G_T	chr11:537493	0.000	0.021	0.301	<0.001%
chr11_553502_C_T	chr11:553502	-0.121	-0.157	-0.301	0.0020%
chr11_535671_G_T	chr11:535671	0.184	0.072	0.228	0.0013%
chr11_551338_C_T	chr11:551338	0.046	0.073	0.291	4.80%
chr11_535829_G_A	chr11:535829	0.091	0.056	0.288	0.0033%
chr11_535851_C_T	chr11:535851	-0.021	0.030	0.288	<0.001%
chr11_535996_G_A	chr11:535996	0.037	0.051	0.288	<0.001%
chr11_537395_T_A	chr11:537395	-0.068	-0.256	-0.288	<0.001%
chr11_537556_G_A	chr11:537556	0.128	0.061	0.288	<0.001%
chr11_537607_T_G	chr11:537607	0.062	0.075	-0.288	<0.001%
chr11_535088_G_T	chr11:535088	0.027	0.035	0.286	0.0013%
chr11_535647_C_T	chr11:535647	0.146	0.110	0.283	<0.001%
chr11_535518_G_A	chr11:535518	0.177	0.033	0.128	<0.001%
chr11_535839_C_T	chr11:535839	0.000	0.065	0.281	0.054%
chr11_535111_C_T	chr11:535111	0.009	0.023	0.281	0.042%
chr11_535824_G_A	chr11:535824	0.175	0.003	0.111	0.0020%
chr11_535555_C_A	chr11:535555	0.093	0.047	0.277	0.0013%
chr11_526325_C_T	chr11:526325	-0.108	-0.129	-0.275	0.0013%
chr11_535920_C_T	chr11:535920	0.014	0.093	0.275	0.0013%
chr11_537426_A_C	chr11:537426	0.078	0.080	0.275	<0.001%
chr11_537447_A_G	chr11:537447	-0.103	-0.048	-0.275	<0.001%
chr11_551196_C_G	chr11:551196	0.065	0.025	-0.275	<0.001%
chr11_535603_G_T	chr11:535603	0.171	0.060	0.204	<0.001%
chr11_535764_G_C	chr11:535764	-0.169	-0.050	-0.160	0.0013%
chr11_535171_C_A	chr11:535171	0.044	0.028	0.268	0.0013%
chr11_535541_G_A	chr11:535541	0.168	0.028	0.168	0.0020%
chr11_535777_G_T	chr11:535777	-0.006	0.093	0.266	14.0%
chr11_537476_C_A	chr11:537476	-0.167	-0.073	-0.092	<0.001%
chr11_535867_G_A	chr11:535867	0.118	0.133	0.261	<0.001%
chr11_536130_C_G	chr11:536130	0.021	0.046	0.261	0.0013%
chr11_537484_T_C	chr11:537484	0.008	-0.029	0.261	0.0020%
chr11_537568_C_G	chr11:537568	0.165	0.053	0.026	<0.001%
chr11_535581_A_C	chr11:535581	-0.091	-0.078	-0.259	<0.001%
chr11_535777_G_C	chr11:535777	-0.070	0.046	0.258	0.0033%
chr11_535823_G_T	chr11:535823	0.163	0.021	0.193	<0.001%
chr11_537501_C_T	chr11:537501	-0.163	-0.085	-0.105	0.0046%
chr11_535363_C_A	chr11:535363	-0.162	0.018	0.072	<0.001%
chr11_535335_C_T	chr11:535335	0.159	-0.009	0.031	0.0021%
chr11_553481_G_A	chr11:553481	-0.159	-0.203	-0.248	<0.001%
chr11_535171_C_T	chr11:535171	0.030	0.025	0.251	<0.001%
chr11_535103_G_A	chr11:535103	-0.020	0.019	0.249	<0.001%
chr11_535112_G_A	chr11:535112	0.016	0.032	0.249	1.84%
chr11_535893_C_T	chr11:535893	0.047	0.056	0.248	<0.001%
chr11_535917_C_T	chr11:535917	0.002	0.029	0.248	0.0013%
chr11_535959_C_T	chr11:535959	0.035	0.056	0.248	0.0013%
chr11_535965_C_T	chr11:535965	0.033	0.062	0.248	<0.001%
chr11_535972_C_A	chr11:535972	-0.031	0.006	0.248	<0.001%
chr11_536080_C_T	chr11:536080	-0.002	0.030	0.248	<0.001%
chr11_537406_G_A	chr11:537406	-0.008	0.233	0.248	<0.001%
chr11_537417_C_G	chr11:537417	-0.054	-0.059	-0.248	<0.001%
chr11_537432_C_T	chr11:537432	0.126	0.097	0.248	<0.001%
chr11_535369_G_A	chr11:535369	0.154	0.000	0.055	4.85%
chr11_535586_C_G	chr11:535586	-0.153	-0.057	-0.216	<0.001%
chr11_535741_G_A	chr11:535741	-0.004	0.053	0.239	0.0013%
chr11_535876_G_A	chr11:535876	0.002	0.029	0.235	0.0046%
chr11_535971_G_A	chr11:535971	0.025	0.021	0.235	0.0013%
chr11_536010_T_A	chr11:536010	-0.019	0.054	0.235	<0.001%
chr11_536120_C_G	chr11:536120	0.043	0.048	0.235	<0.001%
chr11_536218_C_T	chr11:536218	0.052	0.062	0.235	0.0059%
chr11_537411_G_C	chr11:537411	-0.070	-0.059	-0.235	<0.001%
chr11_544291_C_T	chr11:544291	-0.075	-0.057	-0.235	0.317%
chr11_551447_C_T	chr11:551447	0.134	0.159	0.235	0.0033%
chr11_535511_C_A	chr11:535511	0.145	0.018	0.068	0.0014%
chr11_535720_G_A	chr11:535720	0.144	0.053	0.203	0.0013%
chr11_544236_G_C	chr11:544236	0.010	0.064	0.229	0.0098%
chr11_535181_C_T	chr11:535181	0.047	0.010	0.228	0.0033%
chr11_535851_C_A	chr11:535851	0.008	0.024	0.222	<0.001%
chr11_535875_C_G	chr11:535875	-0.004	0.010	0.222	<0.001%
chr11_535902_C_T	chr11:535902	0.000	0.046	0.222	0.0026%
chr11_535921_C_T	chr11:535921	0.014	0.056	0.222	<0.001%
chr11_535991_C_T	chr11:535991	0.047	0.054	0.222	0.111%
chr11_536047_C_T	chr11:536047	0.014	0.035	0.222	0.0013%
chr11_536109_C_G	chr11:536109	0.033	0.030	0.222	0.0092%
chr11_536119_C_T	chr11:536119	0.045	0.040	0.222	<0.001%
chr11_536157_C_T	chr11:536157	0.025	0.050	0.222	0.0013%
chr11_537513_C_A	chr11:537513	-0.027	-0.010	-0.222	0.035%
chr11_544370_A_T	chr11:544370	0.075	0.062	0.222	0.0013%
chr11_553490_G_A	chr11:553490	-0.140	-0.129	0.046	0.0020%
chr11_535610_A_G	chr11:535610	-0.128	-0.126	-0.219	0.0013%
chr11_526508_C_T	chr11:526508	-0.045	-0.131	-0.219	<0.001%
chr11_553538_A_G	chr11:553538	-0.138	-0.171	-0.124	<0.001%
chr11_526337_G_A	chr11:526337	-0.077	-0.155	-0.216	0.0020%
chr11_535511_C_T	chr11:535511	0.136	0.031	0.101	0.0041%
chr11_535321_C_A	chr11:535321	0.134	0.002	0.119	0.0082%
chr11_535489_G_T	chr11:535489	0.134	0.015	0.089	0.0055%
chr11_535683_G_A	chr11:535683	-0.134	0.020	-0.042	<0.001%
chr11_535697_G_C	chr11:535697	0.134	0.119	0.094	<0.001%
chr11_535543_G_A	chr11:535543	0.133	0.059	0.138	<0.001%
chr11_535855_G_A	chr11:535855	0.010	0.029	0.209	<0.001%
chr11_535991_C_A	chr11:535991	0.025	0.053	0.209	<0.001%
chr11_536032_G_A	chr11:536032	0.004	0.021	0.209	0.0026%
chr11_536119_C_G	chr11:536119	0.056	0.042	0.209	<0.001%
chr11_536120_C_T	chr11:536120	0.025	0.034	0.209	<0.001%
chr11_535621_A_G	chr11:535621	-0.130	-0.095	-0.209	<0.001%
chr11_535496_C_T	chr11:535496	0.130	0.012	0.086	<0.001%
chr11_537634_G_A	chr11:537634	0.130	0.073	0.170	<0.001%
chr11_535158_G_A	chr11:535158	0.018	0.024	0.205	<0.001%
chr11_535162_C_T	chr11:535162	0.015	0.025	0.202	0.0026%
chr11_535506_G_A	chr11:535506	0.127	0.009	0.072	0.0088%
chr11_551760_C_T	chr11:551760	-0.127	0.056	-0.072	0.0013%

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.