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SETD9
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near SETD9
chr5:56,809,259..57,028,899, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr5_56814933_T_A | chr5:56814933 | -0.234 | -0.568 | -1.000 | — |
| chr5_56814932_T_C | chr5:56814932 | -0.277 | -0.638 | -1.000 | — |
| chr5_56814932_T_G | chr5:56814932 | -0.311 | -0.640 | -1.000 | — |
| chr5_56814937_T_G | chr5:56814937 | -0.267 | -0.552 | -1.000 | — |
| chr5_56814934_C_A | chr5:56814934 | -0.224 | -0.592 | -1.000 | 0.046% |
| chr5_56814933_T_G | chr5:56814933 | -0.258 | -0.581 | -1.000 | — |
| chr5_56814932_T_A | chr5:56814932 | -0.207 | -0.653 | -1.000 | — |
| chr5_56814931_T_C | chr5:56814931 | -0.188 | -0.562 | -1.000 | — |
| chr5_56814931_T_G | chr5:56814931 | -0.195 | -0.569 | -1.000 | — |
| chr5_56814938_T_G | chr5:56814938 | -0.229 | -0.564 | -1.000 | — |
| chr5_56814934_C_G | chr5:56814934 | -0.212 | -0.592 | -1.000 | <0.001% |
| chr5_56814931_T_A | chr5:56814931 | -0.171 | -0.570 | -1.000 | — |
| chr5_56814937_T_C | chr5:56814937 | -0.250 | -0.512 | -1.000 | — |
| chr5_56814934_C_T | chr5:56814934 | -0.221 | -0.532 | -1.000 | — |
| chr5_56814930_C_A | chr5:56814930 | -0.244 | -0.496 | -1.000 | — |
| chr5_56814935_G_C | chr5:56814935 | -0.256 | -0.524 | -1.000 | — |
| chr5_56814938_T_C | chr5:56814938 | -0.215 | -0.482 | -1.000 | — |
| chr5_56814937_T_A | chr5:56814937 | -0.207 | -0.455 | -1.000 | — |
| chr5_56814939_T_A | chr5:56814939 | -0.202 | -0.479 | -1.000 | — |
| chr5_56814939_T_G | chr5:56814939 | -0.198 | -0.495 | -1.000 | — |
| chr5_56814930_C_T | chr5:56814930 | -0.217 | -0.446 | -1.000 | — |
| chr5_56814933_T_C | chr5:56814933 | -0.232 | -0.434 | -1.000 | — |
| chr5_56814938_T_A | chr5:56814938 | -0.169 | -0.424 | -1.000 | — |
| chr5_56814935_G_T | chr5:56814935 | -0.205 | -0.411 | -1.000 | — |
| chr5_56814929_G_T | chr5:56814929 | -0.210 | -0.283 | -1.000 | — |
| chr5_56814967_C_G | chr5:56814967 | -0.014 | -0.048 | 1.000 | — |
| chr5_56814972_C_G | chr5:56814972 | 0.533 | -0.045 | 0.183 | — |
| chr5_56815223_C_A | chr5:56815223 | 0.065 | -0.116 | 0.904 | — |
| chr5_56814929_G_C | chr5:56814929 | -0.147 | -0.140 | -0.843 | <0.001% |
| chr5_56814928_T_G | chr5:56814928 | -0.154 | -0.275 | -0.788 | — |
| chr5_56815220_T_C | chr5:56815220 | -0.226 | -0.251 | -0.788 | — |
| chr5_56815223_C_G | chr5:56815223 | 0.048 | -0.071 | 0.708 | — |
| chr5_56814939_T_C | chr5:56814939 | -0.171 | -0.205 | -0.666 | — |
| chr5_56815015_C_G | chr5:56815015 | 0.366 | 0.200 | 0.373 | <0.001% |
| chr5_56814969_G_A | chr5:56814969 | 0.357 | -0.005 | 0.403 | — |
| chr5_56814929_G_A | chr5:56814929 | 0.251 | 0.178 | 0.635 | — |
| chr5_56814967_C_A | chr5:56814967 | 0.007 | -0.006 | 0.617 | — |
| chr5_56815222_C_T | chr5:56815222 | 0.301 | -0.101 | 0.592 | <0.001% |
| chr5_56814966_C_T | chr5:56814966 | 0.026 | 0.000 | 0.568 | — |
| chr5_56815221_A_G | chr5:56815221 | 0.304 | -0.188 | 0.183 | — |
| chr5_56814968_T_A | chr5:56814968 | 0.070 | 0.008 | 0.537 | — |
| chr5_56815213_C_G | chr5:56815213 | 0.267 | 0.101 | 0.537 | — |
| chr5_56814968_T_C | chr5:56814968 | 0.118 | -0.058 | 0.531 | — |
| chr5_56814965_A_G | chr5:56814965 | 0.065 | -0.098 | 0.519 | 0.0026% |
| chr5_56814964_C_G | chr5:56814964 | 0.034 | -0.024 | 0.501 | — |
| chr5_56814956_C_T | chr5:56814956 | 0.270 | 0.015 | 0.000 | 0.0039% |
| chr5_56815189_A_T | chr5:56815189 | 0.048 | 0.075 | 0.476 | <0.001% |
| chr5_56815224_T_C | chr5:56815224 | 0.260 | -0.158 | -0.012 | 0.0092% |
| chr5_56814968_T_G | chr5:56814968 | 0.043 | -0.053 | 0.458 | — |
| chr5_56815221_A_T | chr5:56815221 | 0.133 | -0.064 | 0.458 | — |
| chr5_56814946_G_C | chr5:56814946 | 0.067 | -0.008 | 0.452 | <0.001% |
| chr5_56815217_G_A | chr5:56815217 | 0.116 | 0.184 | 0.446 | <0.001% |
| chr5_56815222_C_A | chr5:56815222 | 0.250 | -0.090 | 0.324 | — |
| chr5_56814948_C_T | chr5:56814948 | 0.051 | 0.001 | -0.440 | — |
| chr5_56815210_C_A | chr5:56815210 | 0.034 | 0.066 | 0.440 | — |
| chr5_56814966_C_G | chr5:56814966 | 0.089 | -0.073 | 0.434 | — |
| chr5_56814983_G_T | chr5:56814983 | -0.092 | -0.143 | -0.434 | — |
| chr5_56814971_G_C | chr5:56814971 | 0.241 | -0.016 | 0.159 | — |
| chr5_56814956_C_G | chr5:56814956 | 0.238 | -0.003 | -0.055 | — |
| chr5_56815224_T_A | chr5:56815224 | 0.236 | -0.142 | 0.281 | — |
| chr5_56814951_C_G | chr5:56814951 | -0.232 | -0.133 | -0.324 | — |
| chr5_56814969_G_C | chr5:56814969 | 0.031 | 0.025 | 0.415 | — |
| chr5_56815215_G_T | chr5:56815215 | 0.109 | 0.070 | 0.415 | — |
| chr5_56815223_C_T | chr5:56815223 | 0.154 | -0.092 | 0.409 | — |
| chr5_56815222_C_G | chr5:56815222 | 0.219 | -0.160 | 0.183 | — |
| chr5_56814927_T_C | chr5:56814927 | 0.210 | 0.016 | -0.189 | — |
| chr5_56814969_G_T | chr5:56814969 | -0.060 | 0.023 | 0.373 | — |
| chr5_56814928_T_A | chr5:56814928 | -0.026 | -0.138 | -0.366 | — |
| chr5_56814940_G_A | chr5:56814940 | -0.044 | -0.091 | -0.360 | — |
| chr5_56814944_C_A | chr5:56814944 | -0.082 | -0.051 | -0.360 | — |
| chr5_56814966_C_A | chr5:56814966 | 0.034 | -0.017 | 0.360 | — |
| chr5_56815014_A_C | chr5:56815014 | -0.067 | -0.095 | -0.354 | — |
| chr5_56815135_C_A | chr5:56815135 | 0.191 | 0.044 | 0.147 | — |
| chr5_56815204_C_G | chr5:56815204 | 0.191 | -0.060 | -0.122 | — |
| chr5_56815225_G_A | chr5:56815225 | 0.161 | -0.027 | 0.342 | — |
| chr5_56814936_C_G | chr5:56814936 | 0.074 | 0.105 | 0.336 | — |
| chr5_56814953_G_C | chr5:56814953 | 0.188 | -0.053 | 0.092 | — |
| chr5_56814965_A_T | chr5:56814965 | 0.002 | -0.083 | 0.336 | — |
| chr5_56814972_C_T | chr5:56814972 | 0.029 | 0.027 | 0.336 | — |
| chr5_56815170_C_G | chr5:56815170 | -0.188 | -0.077 | 0.043 | — |
| chr5_56814956_C_A | chr5:56814956 | 0.176 | 0.058 | 0.324 | — |
| chr5_56814967_C_T | chr5:56814967 | -0.046 | 0.006 | 0.324 | — |
| chr5_56815024_G_T | chr5:56815024 | 0.181 | 0.068 | 0.293 | — |
| chr5_56815231_G_A | chr5:56815231 | 0.015 | 0.032 | 0.324 | 0.017% |
| chr5_56815177_G_T | chr5:56815177 | -0.178 | -0.068 | -0.110 | — |
| chr5_56814959_G_T | chr5:56814959 | 0.065 | 0.044 | 0.311 | — |
| chr5_56814994_G_C | chr5:56814994 | -0.058 | 0.068 | -0.311 | — |
| chr5_56815025_C_A | chr5:56815025 | -0.019 | -0.032 | -0.311 | — |
| chr5_56815214_C_A | chr5:56815214 | 0.027 | 0.063 | 0.311 | — |
| chr5_56815003_C_A | chr5:56815003 | 0.173 | 0.129 | 0.287 | — |
| chr5_56814915_C_A | chr5:56814915 | -0.074 | -0.035 | -0.327 | 0.177% |
| chr5_56815225_G_T | chr5:56815225 | 0.096 | -0.044 | 0.305 | — |
| chr5_56815200_G_A | chr5:56815200 | 0.168 | 0.085 | 0.220 | 0.0026% |
| chr5_56815218_A_G | chr5:56815218 | -0.079 | -0.058 | -0.299 | — |
| chr5_56814959_G_A | chr5:56814959 | 0.164 | -0.001 | -0.024 | — |
| chr5_56815193_T_G | chr5:56815193 | 0.144 | -0.089 | -0.293 | — |
| chr5_56815225_G_C | chr5:56815225 | 0.130 | -0.090 | 0.293 | — |
| chr5_56814961_C_G | chr5:56814961 | -0.162 | -0.008 | -0.067 | — |
| chr5_56815128_C_A | chr5:56815128 | 0.080 | 0.014 | 0.287 | — |
| chr5_56815183_C_A | chr5:56815183 | 0.014 | 0.098 | 0.287 | — |
| chr5_56815208_T_C | chr5:56815208 | 0.161 | -0.073 | -0.244 | — |
| chr5_56815213_C_A | chr5:56815213 | 0.031 | 0.055 | 0.287 | — |
| chr5_56814945_A_T | chr5:56814945 | 0.159 | 0.012 | 0.098 | — |
| chr5_56814598_C_T | chr5:56814598 | 0.087 | 0.096 | 0.301 | 0.021% |
| chr5_56814894_T_C | chr5:56814894 | -0.025 | 0.134 | 0.301 | <0.001% |
| chr5_56814902_G_T | chr5:56814902 | -0.016 | -0.051 | -0.301 | <0.001% |
| chr5_56815219_C_A | chr5:56815219 | 0.058 | 0.037 | 0.281 | — |
| chr5_56815017_G_T | chr5:56815017 | 0.009 | 0.087 | -0.269 | — |
| chr5_56815126_T_C | chr5:56815126 | -0.050 | 0.045 | -0.269 | — |
| chr5_56815183_C_T | chr5:56815183 | -0.044 | 0.033 | 0.269 | <0.001% |
| chr5_56815210_C_T | chr5:56815210 | 0.003 | 0.050 | 0.269 | <0.001% |
| chr5_56815227_C_T | chr5:56815227 | 0.002 | 0.051 | 0.269 | 0.0013% |
| chr5_56814927_T_A | chr5:56814927 | -0.031 | -0.164 | -0.263 | — |
| chr5_56815181_T_G | chr5:56815181 | -0.010 | -0.042 | -0.263 | — |
| chr5_56815192_C_A | chr5:56815192 | -0.147 | -0.059 | -0.165 | 0.0020% |
| chr5_56814964_C_A | chr5:56814964 | 0.007 | 0.010 | 0.256 | — |
| chr5_56814975_C_G | chr5:56814975 | -0.034 | 0.060 | 0.256 | — |
| chr5_56814990_C_G | chr5:56814990 | 0.144 | 0.027 | -0.018 | — |
| chr5_56815004_C_G | chr5:56815004 | 0.144 | -0.034 | 0.165 | 0.0020% |
| chr5_56815196_T_C | chr5:56815196 | 0.079 | -0.058 | -0.256 | — |
| chr5_56815224_T_G | chr5:56815224 | 0.144 | -0.177 | -0.031 | 0.0026% |
| chr5_56815228_G_A | chr5:56815228 | 0.104 | 0.037 | 0.256 | 0.0013% |
| chr5_56815111_A_T | chr5:56815111 | 0.142 | -0.031 | 0.165 | — |
| chr5_56815114_G_A | chr5:56815114 | -0.036 | -0.079 | -0.250 | — |
| chr5_56815168_A_T | chr5:56815168 | -0.140 | -0.131 | -0.244 | — |
| chr5_56815181_T_C | chr5:56815181 | -0.038 | -0.029 | -0.250 | 0.0020% |
| chr5_56815206_G_A | chr5:56815206 | 0.099 | 0.011 | 0.250 | — |
| chr5_56814965_A_C | chr5:56814965 | 0.041 | -0.190 | 0.244 | — |
| chr5_56814979_G_T | chr5:56814979 | 0.137 | 0.033 | -0.177 | — |
| chr5_56815196_T_A | chr5:56815196 | -0.021 | 0.046 | -0.244 | — |
| chr5_56814973_G_A | chr5:56814973 | -0.017 | -0.021 | -0.238 | — |
| chr5_56815055_G_A | chr5:56815055 | -0.024 | 0.063 | -0.238 | — |
| chr5_56815192_C_G | chr5:56815192 | -0.133 | -0.066 | -0.079 | — |
| chr5_56814479_C_T | chr5:56814479 | 0.076 | 0.115 | 0.248 | <0.001% |
| chr5_56814927_T_G | chr5:56814927 | -0.046 | -0.081 | -0.232 | — |
| chr5_56815003_C_G | chr5:56815003 | 0.092 | 0.031 | 0.232 | — |
| chr5_56815145_C_A | chr5:56815145 | 0.010 | 0.051 | 0.232 | — |
| chr5_56815175_C_T | chr5:56815175 | -0.010 | 0.044 | 0.232 | — |
| chr5_56815176_A_C | chr5:56815176 | 0.000 | -0.049 | -0.232 | — |
| chr5_56815211_G_A | chr5:56815211 | 0.130 | 0.054 | 0.073 | — |
| chr5_56814951_C_T | chr5:56814951 | -0.072 | -0.047 | -0.226 | — |
| chr5_56815182_G_T | chr5:56815182 | 0.010 | 0.122 | 0.226 | — |
| chr5_56815207_G_T | chr5:56815207 | 0.065 | 0.027 | 0.226 | — |
| chr5_56815209_G_A | chr5:56815209 | -0.041 | 0.040 | 0.226 | — |
| chr5_56815216_G_T | chr5:56815216 | 0.082 | 0.068 | 0.226 | — |
| chr5_56815228_G_T | chr5:56815228 | 0.038 | 0.038 | 0.226 | — |
| chr5_56814928_T_C | chr5:56814928 | -0.074 | -0.094 | -0.220 | — |
| chr5_56814944_C_G | chr5:56814944 | -0.031 | -0.038 | -0.220 | — |
| chr5_56815001_T_A | chr5:56815001 | -0.123 | 0.016 | 0.122 | — |
| chr5_56815165_G_A | chr5:56815165 | -0.123 | -0.088 | -0.098 | — |
| chr5_56815061_G_A | chr5:56815061 | 0.021 | -0.027 | -0.214 | — |
| chr5_56815103_T_G | chr5:56815103 | 0.015 | 0.028 | 0.214 | — |
| chr5_56815148_G_T | chr5:56815148 | 0.065 | 0.064 | 0.214 | — |
| chr5_56815164_A_C | chr5:56815164 | 0.120 | 0.065 | 0.079 | — |
| chr5_56815188_A_T | chr5:56815188 | 0.120 | 0.022 | 0.122 | — |
| chr5_56815196_T_G | chr5:56815196 | 0.120 | -0.029 | -0.159 | — |
| chr5_56815215_G_A | chr5:56815215 | 0.014 | 0.038 | 0.214 | — |
| chr5_56815230_C_T | chr5:56815230 | -0.021 | 0.019 | 0.214 | — |
| chr5_56814943_G_T | chr5:56814943 | -0.070 | 0.005 | -0.208 | — |
| chr5_56814948_C_A | chr5:56814948 | -0.005 | -0.034 | -0.208 | — |
| chr5_56814957_C_A | chr5:56814957 | 0.116 | 0.011 | -0.031 | — |
| chr5_56814971_G_T | chr5:56814971 | 0.116 | 0.003 | 0.098 | — |
| chr5_56815130_G_C | chr5:56815130 | 0.116 | 0.071 | 0.012 | <0.001% |
| chr5_56815157_T_G | chr5:56815157 | -0.003 | -0.023 | 0.208 | — |
| chr5_56815173_C_G | chr5:56815173 | -0.116 | -0.027 | 0.031 | — |
| chr5_56815186_C_A | chr5:56815186 | 0.024 | 0.023 | 0.208 | — |
| chr5_56815205_C_A | chr5:56815205 | -0.075 | 0.151 | 0.208 | — |
| chr5_56815230_C_G | chr5:56815230 | 0.075 | 0.056 | 0.208 | — |
| chr5_56814985_C_G | chr5:56814985 | -0.115 | 0.007 | 0.165 | — |
| chr5_56814926_C_A | chr5:56814926 | -0.039 | -0.083 | -0.202 | — |
| chr5_56814930_C_G | chr5:56814930 | 0.021 | 0.146 | 0.202 | — |
| chr5_56814973_G_C | chr5:56814973 | -0.032 | 0.035 | 0.202 | — |
| chr5_56814998_G_T | chr5:56814998 | 0.038 | 0.052 | 0.202 | — |
| chr5_56815030_G_A | chr5:56815030 | 0.015 | 0.003 | -0.202 | 0.0013% |
| chr5_56815113_G_C | chr5:56815113 | 0.082 | -0.007 | 0.202 | — |
| chr5_56815180_C_A | chr5:56815180 | -0.113 | -0.036 | 0.000 | 0.077% |
| chr5_56815192_C_T | chr5:56815192 | -0.113 | -0.005 | -0.031 | 0.0085% |
| chr5_56815198_C_T | chr5:56815198 | -0.113 | -0.028 | 0.055 | — |
| chr5_56815209_G_T | chr5:56815209 | -0.027 | 0.016 | 0.202 | — |
| chr5_56815213_C_T | chr5:56815213 | 0.031 | 0.077 | 0.202 | — |
| chr5_56815220_T_G | chr5:56815220 | 0.113 | -0.114 | -0.031 | — |
| chr5_56815012_C_A | chr5:56815012 | 0.111 | -0.008 | -0.104 | — |
| chr5_56814598_C_G | chr5:56814598 | 0.037 | 0.051 | 0.209 | <0.001% |
| chr5_56814882_A_C | chr5:56814882 | 0.074 | 0.050 | -0.209 | 0.024% |
| chr5_56814976_G_C | chr5:56814976 | 0.003 | 0.018 | 0.195 | — |
| chr5_56815083_C_G | chr5:56815083 | 0.096 | -0.003 | 0.195 | — |
| chr5_56815123_C_A | chr5:56815123 | -0.062 | 0.012 | -0.195 | — |
| chr5_56815184_C_T | chr5:56815184 | 0.062 | 0.042 | 0.195 | — |
| chr5_56815205_C_T | chr5:56815205 | 0.048 | 0.031 | 0.195 | — |
| chr5_56815206_G_T | chr5:56815206 | 0.096 | 0.016 | 0.195 | — |
| chr5_56815210_C_G | chr5:56815210 | 0.034 | 0.031 | 0.195 | — |
| chr5_56815217_G_C | chr5:56815217 | 0.089 | -0.038 | -0.195 | — |
| chr5_56815004_C_A | chr5:56815004 | 0.108 | 0.029 | 0.147 | — |
| chr5_56814963_C_A | chr5:56814963 | -0.026 | 0.061 | -0.189 | 0.0013% |
| chr5_56814989_T_G | chr5:56814989 | 0.038 | 0.023 | 0.189 | — |
| chr5_56815014_A_T | chr5:56815014 | 0.084 | -0.017 | -0.189 | — |
| chr5_56815063_C_G | chr5:56815063 | 0.041 | 0.019 | 0.189 | — |
| chr5_56815168_A_G | chr5:56815168 | 0.044 | -0.090 | -0.189 | 0.0013% |
| chr5_56815176_A_G | chr5:56815176 | -0.007 | -0.053 | -0.189 | — |
| chr5_56815209_G_C | chr5:56815209 | 0.065 | -0.004 | 0.189 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.