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SF3A1
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near SF3A1
chr22:30,231,987..30,456,894, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr22_30337647_T_A | chr22:30337647 | 0.417 | 0.573 | 0.641 | — |
| chr22_30337647_T_C | chr22:30337647 | 0.368 | 0.469 | 0.721 | <0.001% |
| chr22_30337658_A_T | chr22:30337658 | 0.391 | 0.466 | 0.580 | — |
| chr22_30256359_C_G | chr22:30256359 | 0.178 | 0.061 | 0.660 | — |
| chr22_30256370_A_G | chr22:30256370 | 0.142 | 0.078 | 0.635 | — |
| chr22_30325940_G_C | chr22:30325940 | 0.315 | 0.240 | 0.244 | — |
| chr22_30337642_C_G | chr22:30337642 | -0.285 | -0.361 | -0.562 | — |
| chr22_30256348_G_A | chr22:30256348 | -0.068 | -0.014 | -0.537 | 0.066% |
| chr22_30337640_C_T | chr22:30337640 | -0.298 | -0.323 | -0.531 | — |
| chr22_30256338_C_G | chr22:30256338 | 0.140 | 0.058 | 0.525 | — |
| chr22_30337646_G_T | chr22:30337646 | 0.267 | 0.290 | 0.525 | — |
| chr22_30337640_C_G | chr22:30337640 | -0.283 | -0.340 | -0.519 | — |
| chr22_30256337_C_G | chr22:30256337 | 0.176 | 0.043 | 0.513 | — |
| chr22_30337652_G_C | chr22:30337652 | -0.267 | -0.356 | -0.513 | — |
| chr22_30337654_A_C | chr22:30337654 | 0.229 | 0.319 | 0.464 | — |
| chr22_30256334_G_C | chr22:30256334 | 0.115 | 0.035 | 0.452 | — |
| chr22_30256350_C_G | chr22:30256350 | 0.075 | -0.045 | 0.452 | — |
| chr22_30325972_C_G | chr22:30325972 | 0.036 | 0.086 | 0.452 | — |
| chr22_30337661_G_A | chr22:30337661 | 0.250 | 0.340 | 0.330 | — |
| chr22_30256330_T_A | chr22:30256330 | -0.094 | 0.065 | -0.427 | — |
| chr22_30256346_G_C | chr22:30256346 | -0.092 | 0.003 | -0.427 | <0.001% |
| chr22_30256351_C_A | chr22:30256351 | 0.159 | 0.017 | 0.427 | — |
| chr22_30337636_T_G | chr22:30337636 | -0.239 | -0.279 | -0.421 | — |
| chr22_30337655_C_A | chr22:30337655 | -0.234 | -0.269 | -0.385 | — |
| chr22_30337652_G_A | chr22:30337652 | -0.195 | -0.266 | -0.403 | — |
| chr22_30337638_G_A | chr22:30337638 | -0.220 | -0.242 | -0.385 | — |
| chr22_30256332_C_G | chr22:30256332 | 0.113 | 0.018 | 0.391 | — |
| chr22_30256333_T_C | chr22:30256333 | 0.115 | 0.013 | 0.391 | — |
| chr22_30337636_T_A | chr22:30337636 | -0.185 | -0.213 | -0.391 | — |
| chr22_30337642_C_A | chr22:30337642 | -0.202 | -0.236 | -0.391 | — |
| chr22_30337644_T_C | chr22:30337644 | 0.188 | 0.190 | 0.385 | — |
| chr22_30256339_T_G | chr22:30256339 | 0.132 | 0.040 | 0.379 | — |
| chr22_30337636_T_C | chr22:30337636 | -0.173 | -0.203 | -0.379 | — |
| chr22_30337637_T_G | chr22:30337637 | -0.173 | -0.231 | -0.379 | — |
| chr22_30337644_T_A | chr22:30337644 | 0.190 | 0.223 | 0.373 | — |
| chr22_30337638_G_C | chr22:30337638 | -0.207 | -0.234 | -0.336 | — |
| chr22_30337637_T_A | chr22:30337637 | -0.168 | -0.208 | -0.360 | — |
| chr22_30256342_T_C | chr22:30256342 | 0.072 | 0.016 | 0.342 | — |
| chr22_30256346_G_T | chr22:30256346 | -0.048 | -0.016 | -0.342 | — |
| chr22_30337641_C_A | chr22:30337641 | 0.158 | 0.238 | 0.336 | — |
| chr22_30337644_T_G | chr22:30337644 | -0.149 | -0.192 | -0.330 | — |
| chr22_30337645_G_T | chr22:30337645 | 0.184 | 0.170 | 0.232 | — |
| chr22_30337635_C_A | chr22:30337635 | -0.133 | -0.177 | -0.324 | — |
| chr22_30337646_G_A | chr22:30337646 | 0.181 | 0.240 | 0.311 | — |
| chr22_30256348_G_C | chr22:30256348 | -0.060 | -0.042 | -0.318 | — |
| chr22_30256355_T_A | chr22:30256355 | -0.029 | -0.019 | -0.318 | — |
| chr22_30256356_T_C | chr22:30256356 | -0.135 | -0.018 | -0.318 | — |
| chr22_30325941_T_C | chr22:30325941 | -0.031 | -0.006 | 0.318 | — |
| chr22_30337649_C_A | chr22:30337649 | 0.130 | 0.182 | 0.318 | — |
| chr22_30337633_T_A | chr22:30337633 | 0.153 | 0.196 | 0.311 | — |
| chr22_30337646_G_C | chr22:30337646 | 0.140 | 0.175 | 0.311 | — |
| chr22_30337652_G_T | chr22:30337652 | -0.164 | -0.216 | -0.311 | — |
| chr22_30256328_T_G | chr22:30256328 | 0.019 | -0.004 | 0.305 | — |
| chr22_30256370_A_C | chr22:30256370 | 0.089 | 0.022 | 0.305 | — |
| chr22_30256342_T_G | chr22:30256342 | 0.062 | 0.031 | 0.293 | — |
| chr22_30337651_T_C | chr22:30337651 | -0.162 | -0.200 | -0.293 | — |
| chr22_30337639_G_C | chr22:30337639 | -0.142 | -0.158 | -0.287 | — |
| chr22_30325882_G_C | chr22:30325882 | 0.159 | 0.160 | 0.159 | — |
| chr22_30256347_C_G | chr22:30256347 | -0.096 | 0.000 | -0.281 | — |
| chr22_30256355_T_C | chr22:30256355 | -0.106 | -0.021 | -0.281 | — |
| chr22_30256356_T_A | chr22:30256356 | -0.068 | -0.001 | -0.281 | — |
| chr22_30337659_T_A | chr22:30337659 | -0.155 | -0.169 | -0.208 | — |
| chr22_30337637_T_C | chr22:30337637 | -0.151 | -0.188 | -0.269 | — |
| chr22_30256333_T_G | chr22:30256333 | 0.065 | 0.012 | 0.269 | — |
| chr22_30256343_G_T | chr22:30256343 | 0.032 | 0.034 | 0.269 | — |
| chr22_30256345_C_A | chr22:30256345 | -0.014 | 0.008 | -0.269 | — |
| chr22_30256362_A_C | chr22:30256362 | 0.043 | 0.016 | 0.269 | — |
| chr22_30337661_G_C | chr22:30337661 | 0.130 | 0.152 | 0.263 | — |
| chr22_30337656_T_G | chr22:30337656 | -0.146 | -0.161 | -0.110 | — |
| chr22_30256339_T_C | chr22:30256339 | 0.044 | 0.026 | 0.256 | — |
| chr22_30256351_C_G | chr22:30256351 | 0.125 | 0.013 | 0.256 | — |
| chr22_30325975_T_G | chr22:30325975 | 0.072 | 0.038 | 0.256 | — |
| chr22_30337639_G_T | chr22:30337639 | -0.138 | -0.131 | -0.256 | — |
| chr22_30256330_T_G | chr22:30256330 | 0.046 | -0.006 | 0.244 | — |
| chr22_30256345_C_T | chr22:30256345 | -0.055 | -0.006 | -0.244 | 0.0072% |
| chr22_30256352_C_G | chr22:30256352 | 0.113 | 0.032 | 0.244 | — |
| chr22_30337655_C_G | chr22:30337655 | -0.137 | -0.114 | -0.104 | — |
| chr22_30337659_T_G | chr22:30337659 | -0.136 | -0.147 | -0.183 | — |
| chr22_30337633_T_G | chr22:30337633 | 0.120 | 0.156 | 0.238 | — |
| chr22_30337634_A_T | chr22:30337634 | 0.087 | 0.105 | 0.238 | — |
| chr22_30337651_T_G | chr22:30337651 | -0.132 | -0.114 | -0.092 | — |
| chr22_30256347_C_T | chr22:30256347 | -0.031 | 0.005 | -0.232 | 0.0020% |
| chr22_30256359_C_A | chr22:30256359 | -0.036 | 0.003 | -0.232 | — |
| chr22_30256483_A_C | chr22:30256483 | -0.062 | -0.027 | -0.232 | — |
| chr22_30325958_G_A | chr22:30325958 | 0.022 | 0.061 | -0.232 | — |
| chr22_30337651_T_A | chr22:30337651 | -0.130 | -0.144 | -0.195 | — |
| chr22_30337655_C_T | chr22:30337655 | -0.130 | -0.136 | -0.226 | <0.001% |
| chr22_30337657_A_C | chr22:30337657 | 0.064 | 0.105 | 0.232 | — |
| chr22_30337642_C_T | chr22:30337642 | -0.124 | -0.135 | -0.208 | 0.0014% |
| chr22_30256328_T_C | chr22:30256328 | 0.038 | 0.006 | 0.220 | — |
| chr22_30256347_C_A | chr22:30256347 | -0.022 | 0.001 | -0.220 | — |
| chr22_30256392_C_G | chr22:30256392 | -0.118 | -0.027 | -0.220 | — |
| chr22_30325975_T_C | chr22:30325975 | 0.065 | 0.035 | 0.220 | — |
| chr22_30337650_C_T | chr22:30337650 | 0.121 | 0.144 | 0.159 | — |
| chr22_30337656_T_C | chr22:30337656 | -0.121 | -0.143 | -0.189 | — |
| chr22_30337638_G_T | chr22:30337638 | -0.093 | -0.065 | -0.214 | — |
| chr22_30337648_C_A | chr22:30337648 | -0.094 | -0.117 | -0.214 | — |
| chr22_30325924_G_C | chr22:30325924 | 0.118 | 0.073 | 0.195 | — |
| chr22_30256327_C_A | chr22:30256327 | -0.009 | -0.027 | -0.208 | <0.001% |
| chr22_30256353_A_G | chr22:30256353 | 0.075 | 0.012 | 0.208 | — |
| chr22_30256362_A_G | chr22:30256362 | 0.050 | 0.017 | 0.208 | — |
| chr22_30256481_G_T | chr22:30256481 | -0.039 | -0.001 | -0.208 | — |
| chr22_30325973_T_C | chr22:30325973 | 0.075 | 0.019 | 0.208 | — |
| chr22_30337632_G_C | chr22:30337632 | -0.085 | -0.096 | -0.202 | — |
| chr22_30337635_C_T | chr22:30337635 | -0.096 | -0.106 | -0.202 | — |
| chr22_30337660_G_A | chr22:30337660 | -0.108 | -0.138 | -0.202 | — |
| chr22_30325957_G_T | chr22:30325957 | 0.111 | 0.030 | 0.073 | — |
| chr22_30337654_A_T | chr22:30337654 | -0.110 | -0.129 | -0.177 | — |
| chr22_30256336_C_A | chr22:30256336 | 0.021 | 0.027 | -0.195 | — |
| chr22_30256338_C_A | chr22:30256338 | 0.038 | -0.021 | 0.195 | — |
| chr22_30256353_A_C | chr22:30256353 | -0.077 | -0.014 | -0.195 | — |
| chr22_30256357_C_A | chr22:30256357 | 0.026 | 0.049 | -0.195 | 0.0013% |
| chr22_30256360_T_G | chr22:30256360 | 0.072 | 0.021 | 0.195 | — |
| chr22_30256412_A_C | chr22:30256412 | 0.002 | -0.003 | 0.195 | <0.001% |
| chr22_30337629_A_C | chr22:30337629 | 0.092 | 0.096 | 0.195 | — |
| chr22_30337635_C_G | chr22:30337635 | -0.077 | -0.092 | -0.195 | — |
| chr22_30337643_G_T | chr22:30337643 | 0.109 | 0.175 | 0.128 | — |
| chr22_30337632_G_T | chr22:30337632 | -0.082 | -0.094 | -0.189 | — |
| chr22_30256336_C_T | chr22:30256336 | -0.012 | 0.010 | -0.183 | — |
| chr22_30256341_C_A | chr22:30256341 | -0.027 | 0.018 | -0.183 | 0.0046% |
| chr22_30256344_C_T | chr22:30256344 | -0.009 | 0.006 | -0.183 | — |
| chr22_30256346_G_A | chr22:30256346 | -0.072 | -0.034 | -0.183 | <0.001% |
| chr22_30256374_C_A | chr22:30256374 | 0.036 | 0.013 | 0.183 | — |
| chr22_30256375_G_A | chr22:30256375 | -0.046 | 0.000 | -0.183 | 0.018% |
| chr22_30325850_A_T | chr22:30325850 | 0.010 | -0.068 | -0.183 | — |
| chr22_30325966_G_A | chr22:30325966 | -0.021 | -0.017 | -0.183 | <0.001% |
| chr22_30325970_A_G | chr22:30325970 | 0.074 | 0.017 | 0.183 | — |
| chr22_30325973_T_G | chr22:30325973 | 0.082 | 0.019 | 0.183 | — |
| chr22_30325976_T_G | chr22:30325976 | 0.048 | 0.030 | 0.183 | — |
| chr22_30337658_A_C | chr22:30337658 | 0.102 | 0.121 | 0.171 | — |
| chr22_30325971_C_G | chr22:30325971 | 0.099 | 0.022 | 0.098 | — |
| chr22_30337641_C_T | chr22:30337641 | 0.076 | 0.091 | 0.177 | — |
| chr22_30337645_G_A | chr22:30337645 | 0.098 | 0.112 | 0.171 | — |
| chr22_30256337_C_T | chr22:30256337 | 0.097 | 0.019 | 0.122 | — |
| chr22_30337660_G_T | chr22:30337660 | -0.097 | -0.125 | -0.159 | — |
| chr22_30256340_G_A | chr22:30256340 | -0.007 | 0.003 | -0.171 | — |
| chr22_30256348_G_T | chr22:30256348 | 0.003 | -0.013 | -0.171 | — |
| chr22_30256358_C_A | chr22:30256358 | -0.021 | -0.006 | -0.171 | — |
| chr22_30256483_A_T | chr22:30256483 | -0.041 | -0.018 | -0.171 | — |
| chr22_30325921_T_G | chr22:30325921 | -0.060 | -0.009 | -0.171 | — |
| chr22_30325966_G_T | chr22:30325966 | 0.005 | -0.006 | -0.171 | 0.0020% |
| chr22_30325972_C_A | chr22:30325972 | 0.065 | 0.057 | 0.171 | — |
| chr22_30325978_C_A | chr22:30325978 | -0.003 | -0.003 | -0.171 | — |
| chr22_30337660_G_C | chr22:30337660 | -0.095 | -0.097 | -0.128 | — |
| chr22_30325971_C_A | chr22:30325971 | 0.094 | 0.016 | 0.037 | — |
| chr22_30337653_A_C | chr22:30337653 | -0.093 | -0.110 | -0.116 | — |
| chr22_30337632_G_A | chr22:30337632 | -0.060 | -0.066 | -0.165 | — |
| chr22_30337650_C_A | chr22:30337650 | 0.067 | 0.082 | 0.165 | — |
| chr22_30337645_G_C | chr22:30337645 | 0.091 | 0.094 | 0.159 | — |
| chr22_30256325_T_A | chr22:30256325 | -0.009 | 0.019 | -0.159 | — |
| chr22_30256412_A_G | chr22:30256412 | -0.005 | -0.010 | 0.159 | — |
| chr22_30256426_T_C | chr22:30256426 | 0.041 | 0.012 | 0.159 | — |
| chr22_30256473_G_C | chr22:30256473 | -0.010 | -0.005 | -0.159 | — |
| chr22_30256483_A_G | chr22:30256483 | -0.056 | -0.025 | -0.159 | — |
| chr22_30325923_G_C | chr22:30325923 | 0.048 | 0.010 | 0.159 | — |
| chr22_30325927_T_G | chr22:30325927 | -0.003 | 0.000 | 0.159 | — |
| chr22_30325928_C_T | chr22:30325928 | -0.046 | 0.035 | -0.159 | — |
| chr22_30325957_G_C | chr22:30325957 | 0.038 | 0.010 | 0.159 | — |
| chr22_30325976_T_C | chr22:30325976 | 0.026 | 0.013 | 0.159 | — |
| chr22_30337640_C_A | chr22:30337640 | -0.063 | -0.044 | -0.159 | — |
| chr22_30337634_A_G | chr22:30337634 | -0.087 | -0.095 | -0.122 | — |
| chr22_30325971_C_T | chr22:30325971 | 0.084 | 0.016 | 0.073 | 0.0013% |
| chr22_30256358_C_T | chr22:30256358 | -0.003 | -0.003 | -0.147 | — |
| chr22_30256359_C_T | chr22:30256359 | 0.058 | 0.019 | 0.147 | — |
| chr22_30256381_T_C | chr22:30256381 | -0.044 | -0.017 | -0.147 | <0.001% |
| chr22_30256383_T_C | chr22:30256383 | -0.060 | -0.004 | -0.147 | — |
| chr22_30256406_C_G | chr22:30256406 | 0.015 | 0.003 | 0.147 | — |
| chr22_30256424_A_G | chr22:30256424 | 0.029 | 0.000 | 0.147 | — |
| chr22_30256449_C_T | chr22:30256449 | -0.015 | 0.000 | -0.147 | — |
| chr22_30256469_C_G | chr22:30256469 | 0.036 | 0.009 | 0.147 | — |
| chr22_30256470_A_C | chr22:30256470 | -0.029 | -0.009 | -0.147 | — |
| chr22_30256482_T_A | chr22:30256482 | -0.036 | 0.000 | -0.147 | <0.001% |
| chr22_30256484_A_G | chr22:30256484 | -0.039 | -0.017 | -0.147 | — |
| chr22_30325973_T_A | chr22:30325973 | 0.082 | 0.029 | 0.134 | — |
| chr22_30337649_C_G | chr22:30337649 | 0.019 | 0.056 | 0.147 | — |
| chr22_30325975_T_A | chr22:30325975 | 0.080 | 0.032 | 0.134 | — |
| chr22_30337656_T_A | chr22:30337656 | -0.080 | -0.091 | -0.006 | — |
| chr22_30325974_G_A | chr22:30325974 | 0.077 | 0.044 | 0.061 | — |
| chr22_30256325_T_C | chr22:30256325 | -0.026 | 0.005 | -0.134 | — |
| chr22_30256330_T_C | chr22:30256330 | -0.075 | 0.008 | -0.110 | — |
| chr22_30256340_G_T | chr22:30256340 | -0.026 | 0.004 | -0.134 | — |
| chr22_30256352_C_A | chr22:30256352 | 0.015 | -0.005 | -0.134 | — |
| chr22_30256356_T_G | chr22:30256356 | -0.062 | -0.003 | -0.134 | — |
| chr22_30256362_A_T | chr22:30256362 | 0.034 | 0.004 | 0.134 | — |
| chr22_30256363_G_A | chr22:30256363 | -0.046 | -0.006 | -0.134 | — |
| chr22_30256375_G_C | chr22:30256375 | -0.055 | -0.003 | -0.134 | — |
| chr22_30256379_T_C | chr22:30256379 | -0.043 | -0.014 | -0.134 | — |
| chr22_30256387_C_A | chr22:30256387 | -0.055 | -0.012 | -0.134 | <0.001% |
| chr22_30256390_C_G | chr22:30256390 | -0.056 | -0.016 | -0.134 | — |
| chr22_30256427_G_T | chr22:30256427 | -0.044 | -0.013 | -0.134 | — |
| chr22_30256439_C_A | chr22:30256439 | -0.022 | 0.005 | -0.134 | — |
| chr22_30256446_T_C | chr22:30256446 | -0.036 | -0.019 | -0.134 | — |
| chr22_30256481_G_A | chr22:30256481 | -0.024 | 0.012 | -0.134 | — |
| chr22_30325886_C_G | chr22:30325886 | 0.014 | 0.004 | 0.134 | — |
| chr22_30325893_T_C | chr22:30325893 | 0.000 | -0.005 | 0.134 | — |
| chr22_30325967_C_T | chr22:30325967 | 0.046 | 0.001 | -0.134 | 0.0026% |
| chr22_30337641_C_G | chr22:30337641 | 0.040 | 0.051 | 0.134 | — |
| chr22_30256334_G_A | chr22:30256334 | 0.074 | 0.021 | 0.110 | — |
| chr22_30325974_G_C | chr22:30325974 | 0.074 | 0.040 | 0.110 | — |
| chr22_30337634_A_C | chr22:30337634 | -0.073 | -0.084 | -0.116 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.