Home / Gene
SGMS1
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near SGMS1
chr10:50,205,600..50,723,956, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr10_50393895_C_T | chr10:50393895 | 1.000 | 1.000 | 1.000 | 0.0039% |
| chr10_50393889_T_A | chr10:50393889 | 1.000 | 1.000 | 0.784 | — |
| chr10_50393881_G_T | chr10:50393881 | 1.000 | 0.635 | 0.667 | — |
| chr10_50393884_G_C | chr10:50393884 | 1.000 | 0.693 | 0.608 | — |
| chr10_50393881_G_C | chr10:50393881 | 1.000 | 0.594 | 0.702 | — |
| chr10_50393911_A_T | chr10:50393911 | 1.000 | 0.914 | 0.509 | — |
| chr10_50393882_G_C | chr10:50393882 | 0.861 | 0.476 | 0.585 | — |
| chr10_50393882_G_T | chr10:50393882 | 0.775 | 0.393 | 0.404 | — |
| chr10_50393880_A_C | chr10:50393880 | 0.738 | 0.408 | 0.526 | — |
| chr10_50393906_T_A | chr10:50393906 | 0.738 | 0.617 | 0.480 | — |
| chr10_50393888_C_G | chr10:50393888 | 0.695 | 0.456 | 0.497 | — |
| chr10_50393888_C_T | chr10:50393888 | 0.675 | 0.599 | 0.503 | — |
| chr10_50393889_T_G | chr10:50393889 | 0.629 | 0.350 | 0.468 | — |
| chr10_50393905_C_T | chr10:50393905 | -0.629 | -0.390 | -0.380 | — |
| chr10_50393881_G_A | chr10:50393881 | 0.603 | 0.360 | 0.363 | — |
| chr10_50393895_C_G | chr10:50393895 | 0.599 | 0.416 | 0.310 | — |
| chr10_50393885_A_C | chr10:50393885 | -0.579 | -0.338 | -0.281 | — |
| chr10_50393884_G_A | chr10:50393884 | 0.573 | 0.418 | 0.374 | — |
| chr10_50393857_G_T | chr10:50393857 | -0.560 | -0.264 | -0.462 | — |
| chr10_50393857_G_C | chr10:50393857 | -0.556 | -0.270 | -0.380 | — |
| chr10_50393857_G_A | chr10:50393857 | -0.493 | -0.214 | -0.444 | — |
| chr10_50393886_T_C | chr10:50393886 | 0.477 | 0.242 | 0.240 | — |
| chr10_50393880_A_T | chr10:50393880 | 0.450 | 0.277 | 0.298 | — |
| chr10_50393910_G_T | chr10:50393910 | 0.450 | 0.385 | 0.263 | — |
| chr10_50393899_C_G | chr10:50393899 | -0.421 | -0.227 | -0.234 | — |
| chr10_50393875_A_C | chr10:50393875 | -0.401 | -0.174 | -0.234 | — |
| chr10_50393883_G_C | chr10:50393883 | 0.397 | 0.101 | 0.316 | — |
| chr10_50393883_G_T | chr10:50393883 | 0.384 | 0.151 | 0.222 | 0.0013% |
| chr10_50393905_C_G | chr10:50393905 | -0.374 | -0.267 | -0.140 | — |
| chr10_50393858_G_A | chr10:50393858 | -0.371 | -0.189 | -0.363 | — |
| chr10_50393906_T_C | chr10:50393906 | 0.361 | 0.179 | 0.211 | — |
| chr10_50393867_C_T | chr10:50393867 | -0.348 | -0.086 | -0.333 | — |
| chr10_50393888_C_A | chr10:50393888 | 0.348 | 0.234 | 0.146 | — |
| chr10_50393859_C_T | chr10:50393859 | -0.344 | -0.091 | -0.421 | — |
| chr10_50393876_A_C | chr10:50393876 | 0.328 | 0.144 | 0.257 | — |
| chr10_50393858_G_C | chr10:50393858 | -0.321 | -0.166 | -0.310 | — |
| chr10_50393909_G_T | chr10:50393909 | 0.315 | 0.149 | 0.105 | — |
| chr10_50393869_A_C | chr10:50393869 | -0.311 | -0.237 | -0.152 | — |
| chr10_50393875_A_T | chr10:50393875 | -0.308 | -0.111 | -0.216 | — |
| chr10_50393859_C_G | chr10:50393859 | -0.301 | -0.083 | -0.327 | — |
| chr10_50393887_T_A | chr10:50393887 | 0.301 | 0.204 | 0.152 | — |
| chr10_50393897_T_C | chr10:50393897 | 0.301 | 0.139 | 0.292 | — |
| chr10_50393899_C_A | chr10:50393899 | -0.301 | -0.088 | -0.146 | — |
| chr10_50393886_T_A | chr10:50393886 | 0.295 | 0.146 | 0.146 | — |
| chr10_50393890_T_G | chr10:50393890 | 0.295 | 0.146 | 0.269 | — |
| chr10_50393866_C_G | chr10:50393866 | -0.281 | -0.116 | -0.193 | — |
| chr10_50393879_A_C | chr10:50393879 | 0.275 | 0.212 | 0.211 | — |
| chr10_50393909_G_A | chr10:50393909 | -0.272 | -0.171 | -0.257 | — |
| chr10_50393859_C_A | chr10:50393859 | -0.268 | -0.068 | -0.316 | — |
| chr10_50393873_C_A | chr10:50393873 | 0.268 | -0.018 | 0.058 | — |
| chr10_50393896_G_T | chr10:50393896 | -0.268 | -0.242 | -0.205 | — |
| chr10_50393858_G_T | chr10:50393858 | -0.265 | -0.118 | -0.304 | — |
| chr10_50393891_C_T | chr10:50393891 | 0.265 | 0.244 | 0.094 | 0.064% |
| chr10_50393899_C_T | chr10:50393899 | -0.265 | -0.161 | -0.216 | — |
| chr10_50393866_C_A | chr10:50393866 | -0.262 | -0.060 | -0.281 | — |
| chr10_50393889_T_C | chr10:50393889 | 0.258 | 0.136 | 0.211 | — |
| chr10_50393866_C_T | chr10:50393866 | -0.252 | -0.078 | -0.234 | — |
| chr10_50393882_G_A | chr10:50393882 | 0.252 | 0.050 | 0.058 | — |
| chr10_50313071_G_C | chr10:50313071 | 0.123 | 0.343 | 0.439 | — |
| chr10_50393896_G_C | chr10:50393896 | -0.248 | -0.219 | -0.164 | — |
| chr10_50313068_G_T | chr10:50313068 | 0.245 | -0.097 | 0.111 | — |
| chr10_50393895_C_A | chr10:50393895 | 0.245 | -0.035 | 0.029 | — |
| chr10_50393908_G_A | chr10:50393908 | 0.242 | 0.214 | 0.123 | — |
| chr10_50393867_C_G | chr10:50393867 | -0.235 | 0.013 | -0.181 | — |
| chr10_50393876_A_T | chr10:50393876 | -0.225 | -0.139 | -0.158 | — |
| chr10_50393875_A_G | chr10:50393875 | -0.222 | -0.123 | -0.041 | — |
| chr10_50393897_T_A | chr10:50393897 | -0.219 | -0.139 | -0.105 | — |
| chr10_50393912_C_A | chr10:50393912 | -0.215 | -0.116 | -0.105 | — |
| chr10_50393898_G_T | chr10:50393898 | -0.212 | -0.144 | -0.187 | — |
| chr10_50393910_G_C | chr10:50393910 | -0.212 | -0.191 | -0.181 | — |
| chr10_50393907_A_T | chr10:50393907 | -0.205 | -0.156 | -0.082 | — |
| chr10_50393911_A_G | chr10:50393911 | -0.205 | -0.076 | -0.123 | — |
| chr10_50393855_C_A | chr10:50393855 | -0.202 | -0.030 | -0.228 | — |
| chr10_50393877_C_T | chr10:50393877 | 0.199 | 0.164 | 0.058 | — |
| chr10_50393901_A_T | chr10:50393901 | 0.195 | 0.113 | 0.111 | — |
| chr10_50393891_C_A | chr10:50393891 | -0.192 | -0.186 | -0.240 | — |
| chr10_50393906_T_G | chr10:50393906 | 0.189 | 0.154 | 0.222 | — |
| chr10_50393902_G_A | chr10:50393902 | -0.185 | -0.015 | -0.094 | — |
| chr10_50393905_C_A | chr10:50393905 | -0.185 | -0.264 | 0.018 | — |
| chr10_50393862_A_C | chr10:50393862 | 0.179 | 0.035 | 0.187 | — |
| chr10_50393868_A_G | chr10:50393868 | -0.172 | -0.081 | -0.105 | — |
| chr10_50393865_T_A | chr10:50393865 | -0.169 | -0.030 | -0.175 | — |
| chr10_50393873_C_G | chr10:50393873 | 0.169 | 0.000 | 0.228 | — |
| chr10_50393901_A_C | chr10:50393901 | 0.169 | 0.126 | 0.152 | — |
| chr10_50393874_C_G | chr10:50393874 | -0.162 | -0.121 | -0.023 | — |
| chr10_50393877_C_A | chr10:50393877 | 0.159 | 0.123 | 0.094 | 0.093% |
| chr10_50393894_T_A | chr10:50393894 | -0.159 | -0.088 | -0.117 | — |
| chr10_50393904_C_G | chr10:50393904 | 0.159 | 0.096 | 0.135 | — |
| chr10_50393885_A_T | chr10:50393885 | -0.156 | -0.096 | -0.058 | — |
| chr10_50393890_T_C | chr10:50393890 | 0.156 | 0.091 | 0.164 | — |
| chr10_50393892_G_T | chr10:50393892 | 0.156 | 0.060 | -0.047 | — |
| chr10_50393871_C_A | chr10:50393871 | -0.149 | -0.101 | -0.175 | — |
| chr10_50393878_C_G | chr10:50393878 | -0.149 | -0.086 | -0.018 | — |
| chr10_50393903_T_C | chr10:50393903 | -0.142 | -0.121 | -0.216 | 0.0020% |
| chr10_50393861_A_C | chr10:50393861 | 0.139 | 0.045 | 0.117 | — |
| chr10_50393868_A_C | chr10:50393868 | 0.139 | 0.068 | 0.047 | — |
| chr10_50393893_A_G | chr10:50393893 | 0.139 | 0.023 | 0.088 | — |
| chr10_50393855_C_G | chr10:50393855 | -0.136 | 0.010 | -0.123 | — |
| chr10_50393867_C_A | chr10:50393867 | 0.132 | 0.395 | -0.023 | — |
| chr10_50393891_C_G | chr10:50393891 | 0.132 | 0.101 | 0.088 | — |
| chr10_50313071_G_T | chr10:50313071 | 0.058 | 0.186 | 0.228 | — |
| chr10_50393869_A_T | chr10:50393869 | -0.129 | -0.015 | -0.088 | — |
| chr10_50393884_G_T | chr10:50393884 | 0.129 | 0.123 | 0.035 | — |
| chr10_50313091_G_C | chr10:50313091 | 0.123 | 0.174 | 0.132 | — |
| chr10_50393865_T_G | chr10:50393865 | 0.116 | 0.003 | 0.140 | — |
| chr10_50393886_T_G | chr10:50393886 | 0.116 | -0.023 | 0.053 | — |
| chr10_50393863_G_C | chr10:50393863 | 0.113 | 0.033 | 0.123 | — |
| chr10_50393885_A_G | chr10:50393885 | -0.113 | -0.043 | -0.012 | — |
| chr10_50393902_G_T | chr10:50393902 | 0.109 | 0.179 | 0.076 | — |
| chr10_50393876_A_G | chr10:50393876 | 0.106 | 0.045 | 0.111 | 0.0013% |
| chr10_50393878_C_T | chr10:50393878 | -0.106 | -0.033 | -0.105 | — |
| chr10_50393887_T_C | chr10:50393887 | -0.106 | -0.169 | -0.058 | — |
| chr10_50393864_G_T | chr10:50393864 | -0.103 | -0.048 | -0.105 | — |
| chr10_50393873_C_T | chr10:50393873 | -0.103 | -0.093 | -0.070 | 0.0033% |
| chr10_50393856_T_A | chr10:50393856 | -0.076 | 0.015 | -0.175 | — |
| chr10_50393880_A_G | chr10:50393880 | -0.099 | -0.003 | -0.064 | — |
| chr10_50393909_G_C | chr10:50393909 | 0.099 | -0.028 | 0.064 | — |
| chr10_50393907_A_C | chr10:50393907 | -0.096 | -0.065 | 0.099 | — |
| chr10_50393868_A_T | chr10:50393868 | -0.079 | -0.003 | -0.164 | — |
| chr10_50393883_G_A | chr10:50393883 | -0.066 | -0.184 | -0.164 | — |
| chr10_50313038_A_C | chr10:50313038 | -0.012 | -0.019 | 0.158 | — |
| chr10_50393902_G_C | chr10:50393902 | 0.089 | 0.055 | 0.047 | — |
| chr10_50393870_G_T | chr10:50393870 | -0.086 | -0.023 | -0.135 | — |
| chr10_50313049_A_G | chr10:50313049 | -0.026 | -0.016 | -0.149 | — |
| chr10_50313109_A_C | chr10:50313109 | -0.013 | 0.001 | 0.149 | — |
| chr10_50313135_T_A | chr10:50313135 | 0.034 | 0.142 | 0.146 | — |
| chr10_50393856_T_C | chr10:50393856 | -0.083 | -0.015 | -0.117 | — |
| chr10_50393874_C_A | chr10:50393874 | -0.083 | -0.078 | -0.064 | — |
| chr10_50393874_C_T | chr10:50393874 | 0.083 | 0.048 | 0.006 | — |
| chr10_50393877_C_G | chr10:50393877 | 0.083 | -0.010 | 0.047 | — |
| chr10_50393898_G_C | chr10:50393898 | -0.083 | -0.088 | -0.070 | — |
| chr10_50393862_A_T | chr10:50393862 | 0.079 | 0.028 | 0.041 | — |
| chr10_50393900_A_C | chr10:50393900 | 0.066 | 0.028 | 0.140 | — |
| chr10_50313049_A_T | chr10:50313049 | 0.078 | 0.115 | -0.015 | — |
| chr10_50313083_T_C | chr10:50313083 | 0.002 | 0.024 | 0.137 | — |
| chr10_50313054_A_G | chr10:50313054 | 0.007 | 0.015 | 0.135 | — |
| chr10_50393879_A_G | chr10:50393879 | -0.076 | 0.013 | 0.088 | — |
| chr10_50393894_T_G | chr10:50393894 | 0.076 | 0.025 | 0.094 | — |
| chr10_50393898_G_A | chr10:50393898 | -0.076 | -0.055 | -0.129 | — |
| chr10_50393864_G_A | chr10:50393864 | -0.066 | -0.030 | -0.129 | — |
| chr10_50393878_C_A | chr10:50393878 | -0.073 | 0.003 | -0.058 | — |
| chr10_50393887_T_G | chr10:50393887 | -0.073 | -0.136 | -0.088 | — |
| chr10_50313107_G_A | chr10:50313107 | 0.022 | 0.008 | 0.123 | — |
| chr10_50393897_T_G | chr10:50393897 | 0.010 | 0.030 | 0.123 | — |
| chr10_50313051_A_T | chr10:50313051 | -0.058 | -0.049 | -0.120 | <0.001% |
| chr10_50313055_A_C | chr10:50313055 | 0.066 | 0.103 | 0.114 | — |
| chr10_50393860_A_C | chr10:50393860 | 0.066 | 0.033 | 0.006 | — |
| chr10_50393860_A_T | chr10:50393860 | -0.060 | -0.013 | -0.117 | — |
| chr10_50393879_A_T | chr10:50393879 | 0.066 | 0.106 | 0.035 | — |
| chr10_50313054_A_C | chr10:50313054 | 0.021 | 0.015 | 0.114 | — |
| chr10_50313073_A_T | chr10:50313073 | 0.065 | 0.015 | -0.053 | — |
| chr10_50313047_G_A | chr10:50313047 | 0.002 | -0.006 | -0.111 | — |
| chr10_50393855_C_T | chr10:50393855 | -0.063 | -0.008 | -0.099 | — |
| chr10_50393860_A_G | chr10:50393860 | -0.063 | -0.053 | -0.029 | — |
| chr10_50393870_G_C | chr10:50393870 | -0.017 | 0.018 | -0.111 | — |
| chr10_50393904_C_T | chr10:50393904 | -0.063 | 0.003 | -0.053 | <0.001% |
| chr10_50313056_A_C | chr10:50313056 | 0.026 | 0.011 | 0.108 | — |
| chr10_50313099_T_G | chr10:50313099 | 0.031 | 0.050 | 0.108 | — |
| chr10_50313078_A_T | chr10:50313078 | -0.060 | -0.068 | -0.091 | — |
| chr10_50313045_C_A | chr10:50313045 | -0.027 | -0.030 | -0.105 | — |
| chr10_50393893_A_T | chr10:50393893 | 0.060 | 0.003 | 0.029 | — |
| chr10_50294528_A_C | chr10:50294528 | -0.019 | 0.008 | 0.102 | — |
| chr10_50313048_G_A | chr10:50313048 | 0.002 | -0.008 | -0.099 | — |
| chr10_50313086_G_A | chr10:50313086 | 0.020 | -0.018 | -0.099 | — |
| chr10_50393863_G_A | chr10:50393863 | -0.056 | -0.010 | -0.088 | — |
| chr10_50393872_C_G | chr10:50393872 | -0.003 | -0.020 | 0.099 | — |
| chr10_50393892_G_C | chr10:50393892 | 0.056 | -0.013 | -0.064 | — |
| chr10_50393893_A_C | chr10:50393893 | -0.056 | -0.048 | -0.035 | — |
| chr10_50393903_T_A | chr10:50393903 | 0.056 | 0.003 | -0.070 | — |
| chr10_50313043_T_G | chr10:50313043 | 0.012 | 0.042 | 0.096 | — |
| chr10_50313152_G_T | chr10:50313152 | 0.054 | 0.044 | 0.009 | — |
| chr10_50313104_C_A | chr10:50313104 | -0.035 | -0.016 | 0.094 | — |
| chr10_50393869_A_G | chr10:50393869 | -0.053 | -0.078 | -0.029 | — |
| chr10_50393870_G_A | chr10:50393870 | -0.033 | -0.008 | -0.094 | — |
| chr10_50393871_C_G | chr10:50393871 | 0.053 | -0.028 | 0.000 | — |
| chr10_50393890_T_A | chr10:50393890 | 0.053 | 0.023 | 0.041 | — |
| chr10_50393892_G_A | chr10:50393892 | 0.033 | 0.003 | -0.094 | 0.0059% |
| chr10_50393907_A_G | chr10:50393907 | 0.053 | 0.018 | 0.088 | — |
| chr10_50393908_G_C | chr10:50393908 | -0.053 | -0.015 | 0.000 | — |
| chr10_50313045_C_T | chr10:50313045 | 0.025 | 0.023 | -0.091 | <0.001% |
| chr10_50313053_A_G | chr10:50313053 | 0.022 | 0.040 | 0.091 | — |
| chr10_50313068_G_A | chr10:50313068 | 0.004 | 0.077 | 0.091 | — |
| chr10_50313076_G_A | chr10:50313076 | -0.029 | -0.038 | -0.091 | — |
| chr10_50313138_G_A | chr10:50313138 | 0.008 | -0.033 | 0.091 | — |
| chr10_50393904_C_A | chr10:50393904 | -0.050 | -0.048 | -0.058 | <0.001% |
| chr10_50313075_A_T | chr10:50313075 | -0.049 | -0.054 | -0.070 | — |
| chr10_50313043_T_A | chr10:50313043 | 0.012 | 0.034 | 0.085 | — |
| chr10_50313052_C_A | chr10:50313052 | -0.020 | -0.015 | -0.085 | — |
| chr10_50313090_C_T | chr10:50313090 | 0.012 | 0.006 | 0.085 | 0.033% |
| chr10_50393903_T_G | chr10:50393903 | -0.020 | -0.144 | -0.058 | — |
| chr10_50313046_A_T | chr10:50313046 | -0.012 | -0.029 | -0.082 | — |
| chr10_50313059_T_G | chr10:50313059 | 0.046 | 0.033 | 0.015 | — |
| chr10_50313128_A_C | chr10:50313128 | 0.018 | 0.014 | 0.082 | — |
| chr10_50313131_A_G | chr10:50313131 | -0.001 | 0.014 | 0.082 | — |
| chr10_50393863_G_T | chr10:50393863 | -0.026 | 0.015 | -0.082 | — |
| chr10_50393901_A_G | chr10:50393901 | -0.046 | -0.033 | -0.012 | — |
| chr10_50313047_G_T | chr10:50313047 | 0.009 | 0.004 | -0.079 | — |
| chr10_50313090_C_A | chr10:50313090 | -0.009 | -0.028 | -0.079 | — |
| chr10_50313095_T_A | chr10:50313095 | 0.009 | -0.010 | -0.079 | — |
| chr10_50294519_G_C | chr10:50294519 | 0.022 | 0.006 | -0.076 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.