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SGMS1-AS1
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near SGMS1-AS1
chr10:50,524,950..50,731,636, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR ▾ | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr10_50557031_T_C | chr10:50557031 | 17,984 | 4,288 | 9,600 | — |
| chr10_50582817_C_A | chr10:50582817 | 15,488 | 5,696 | 9,088 | 6.6e-6 |
| chr10_50557029_A_G | chr10:50557029 | 14,848 | 3,904 | 8,064 | — |
| chr10_50556985_G_A | chr10:50556985 | 10,816 | 3,424 | 4,352 | — |
| chr10_50557031_T_A | chr10:50557031 | 10,560 | 3,200 | 4,992 | — |
| chr10_50557014_A_T | chr10:50557014 | -8,704 | -1,376 | -3,968 | — |
| chr10_50557008_T_A | chr10:50557008 | -8,128 | -1,632 | -5,056 | — |
| chr10_50557008_T_G | chr10:50557008 | -8,128 | -1,600 | -4,928 | — |
| chr10_50556987_T_A | chr10:50556987 | 8,064 | 2,528 | 3,456 | — |
| chr10_50556968_G_C | chr10:50556968 | -8,000 | -2,112 | -4,288 | — |
| chr10_50556982_T_A | chr10:50556982 | 8,000 | 1,312 | 3,712 | — |
| chr10_50556972_T_G | chr10:50556972 | -7,936 | -2,400 | -3,648 | — |
| chr10_50556989_T_A | chr10:50556989 | 6,912 | 2,336 | 2,176 | — |
| chr10_50557008_T_C | chr10:50557008 | -6,912 | -1,760 | -2,688 | — |
| chr10_50557004_A_T | chr10:50557004 | -6,592 | -1,632 | -3,392 | — |
| chr10_50556982_T_G | chr10:50556982 | 6,464 | 1,312 | 3,648 | — |
| chr10_50557028_A_G | chr10:50557028 | 6,208 | 1,184 | 4,800 | — |
| chr10_50557015_A_C | chr10:50557015 | 6,144 | 1,984 | 4,224 | — |
| chr10_50557037_T_G | chr10:50557037 | 6,144 | 1,952 | 5,056 | — |
| chr10_50582811_T_C | chr10:50582811 | -5,760 | -1,728 | -3,072 | — |
| chr10_50557037_T_A | chr10:50557037 | 5,696 | 1,664 | 2,368 | — |
| chr10_50557035_A_C | chr10:50557035 | 5,568 | 1,440 | 3,776 | — |
| chr10_50557011_G_T | chr10:50557011 | -5,504 | -928 | -4,288 | — |
| chr10_50557012_T_A | chr10:50557012 | -5,440 | -992 | -3,136 | — |
| chr10_50557018_T_C | chr10:50557018 | -5,440 | 352 | -640 | — |
| chr10_50557071_C_T | chr10:50557071 | 5,312 | 1,408 | 2,176 | — |
| chr10_50582814_T_A | chr10:50582814 | -5,312 | -1,856 | -4,096 | — |
| chr10_50557015_A_T | chr10:50557015 | 5,248 | 1,248 | 3,136 | — |
| chr10_50557007_G_A | chr10:50557007 | -5,056 | -896 | -3,392 | — |
| chr10_50557007_G_T | chr10:50557007 | -5,056 | -1,024 | -3,904 | — |
| chr10_50557014_A_C | chr10:50557014 | -5,056 | -1,600 | -1,728 | — |
| chr10_50557035_A_G | chr10:50557035 | 5,056 | 1,504 | 4,544 | — |
| chr10_50557049_C_G | chr10:50557049 | 5,056 | 960 | 2,176 | — |
| chr10_50557011_G_A | chr10:50557011 | -4,992 | -960 | -4,288 | — |
| chr10_50556971_C_G | chr10:50556971 | 4,864 | 1,632 | 2,816 | — |
| chr10_50557096_T_A | chr10:50557096 | 4,608 | 1,568 | 2,368 | — |
| chr10_50557012_T_G | chr10:50557012 | -4,480 | -416 | -1,088 | — |
| chr10_50557053_G_C | chr10:50557053 | 4,480 | 1,184 | 2,560 | — |
| chr10_50557055_A_T | chr10:50557055 | 4,416 | 1,312 | 2,368 | — |
| chr10_50556969_T_A | chr10:50556969 | 4,288 | 1,248 | 1,920 | 6.6e-6 |
| chr10_50556967_T_C | chr10:50556967 | 4,224 | 512 | 2,432 | — |
| chr10_50556997_G_T | chr10:50556997 | -4,224 | -288 | -2,624 | — |
| chr10_50582808_C_A | chr10:50582808 | 4,224 | 1,376 | 1,792 | — |
| chr10_50557000_G_T | chr10:50557000 | -4,160 | -960 | -3,712 | — |
| chr10_50557012_T_C | chr10:50557012 | -4,032 | -864 | -1,408 | — |
| chr10_50557054_T_C | chr10:50557054 | 4,032 | 928 | 2,496 | — |
| chr10_50557099_C_G | chr10:50557099 | 4,032 | 672 | 1,728 | — |
| chr10_50582814_T_G | chr10:50582814 | 4,032 | 1,760 | 3,840 | — |
| chr10_50557009_G_T | chr10:50557009 | -3,968 | -544 | -3,264 | — |
| chr10_50556983_T_A | chr10:50556983 | 3,904 | 512 | 1,216 | — |
| chr10_50557007_G_C | chr10:50557007 | -3,840 | -896 | -1,664 | — |
| chr10_50557020_G_T | chr10:50557020 | -3,840 | -1,088 | -3,136 | — |
| chr10_50557051_T_G | chr10:50557051 | 3,776 | 768 | 2,304 | — |
| chr10_50557014_A_G | chr10:50557014 | -3,712 | -1,312 | -1,152 | — |
| chr10_50557103_A_C | chr10:50557103 | 3,712 | 576 | 2,176 | — |
| chr10_50557033_A_C | chr10:50557033 | 3,648 | 1,088 | 3,456 | 6.6e-6 |
| chr10_50557040_T_C | chr10:50557040 | 3,648 | 1,152 | 3,392 | — |
| chr10_50556992_T_C | chr10:50556992 | -3,584 | -1,280 | -1,280 | — |
| chr10_50557004_A_G | chr10:50557004 | -3,584 | -1,280 | -2,560 | — |
| chr10_50557005_G_T | chr10:50557005 | -3,584 | -1,088 | -2,688 | — |
| chr10_50557015_A_G | chr10:50557015 | 3,584 | 1,024 | 2,752 | — |
| chr10_50582812_G_T | chr10:50582812 | -3,584 | -1,184 | -2,944 | — |
| chr10_50557016_T_C | chr10:50557016 | 3,520 | 864 | 2,688 | — |
| chr10_50557052_A_G | chr10:50557052 | 3,520 | 896 | 3,008 | — |
| chr10_50557091_T_G | chr10:50557091 | -3,520 | -608 | -768 | — |
| chr10_50557003_A_T | chr10:50557003 | -3,456 | -480 | -2,496 | — |
| chr10_50557016_T_A | chr10:50557016 | -3,456 | -768 | -1,344 | — |
| chr10_50557059_T_C | chr10:50557059 | -3,456 | -864 | -1,344 | — |
| chr10_50557092_A_C | chr10:50557092 | -3,456 | -640 | -960 | — |
| chr10_50557031_T_G | chr10:50557031 | 3,392 | 960 | 4,800 | — |
| chr10_50557001_C_T | chr10:50557001 | -3,392 | -768 | -2,624 | 6.6e-6 |
| chr10_50557010_A_G | chr10:50557010 | -3,328 | -576 | -2,560 | — |
| chr10_50557091_T_C | chr10:50557091 | -3,328 | -352 | -768 | — |
| chr10_50557011_G_C | chr10:50557011 | -3,264 | -416 | -2,624 | — |
| chr10_50557029_A_C | chr10:50557029 | 3,264 | 768 | 2,816 | — |
| chr10_50557030_T_C | chr10:50557030 | 3,200 | 928 | 3,328 | — |
| chr10_50557009_G_C | chr10:50557009 | -3,200 | -416 | -3,008 | — |
| chr10_50557029_A_T | chr10:50557029 | 3,200 | 736 | 2,048 | — |
| chr10_50557047_C_G | chr10:50557047 | 3,200 | 768 | 1,280 | — |
| chr10_50557063_T_A | chr10:50557063 | 3,200 | 832 | 1,664 | — |
| chr10_50556986_A_C | chr10:50556986 | 3,136 | 416 | 2,688 | — |
| chr10_50557010_A_C | chr10:50557010 | -3,136 | -576 | -384 | — |
| chr10_50582799_T_G | chr10:50582799 | -3,136 | -1,120 | -640 | — |
| chr10_50582787_A_C | chr10:50582787 | -3,072 | -1,248 | -2,432 | — |
| chr10_50582816_C_G | chr10:50582816 | 3,072 | 1,120 | 2,304 | — |
| chr10_50557039_A_C | chr10:50557039 | 3,008 | 768 | 3,072 | — |
| chr10_50557056_G_A | chr10:50557056 | 3,008 | 928 | 1,472 | — |
| chr10_50557095_C_T | chr10:50557095 | -3,008 | -160 | -1,280 | — |
| chr10_50582801_T_C | chr10:50582801 | -3,008 | -1,280 | -2,176 | — |
| chr10_50582812_G_C | chr10:50582812 | -3,008 | -1,024 | -2,176 | — |
| chr10_50557055_A_C | chr10:50557055 | 2,944 | 800 | 1,856 | — |
| chr10_50556991_C_A | chr10:50556991 | -2,880 | -544 | -1,856 | — |
| chr10_50557047_C_A | chr10:50557047 | 2,880 | 672 | 896 | — |
| chr10_50582787_A_T | chr10:50582787 | -2,880 | -1,152 | -2,560 | — |
| chr10_50557034_T_C | chr10:50557034 | 2,816 | 960 | 3,712 | — |
| chr10_50556983_T_C | chr10:50556983 | 2,816 | 160 | 1,472 | — |
| chr10_50557020_G_C | chr10:50557020 | -2,816 | -832 | -1,664 | — |
| chr10_50557093_A_T | chr10:50557093 | -2,816 | -384 | -576 | — |
| chr10_50582803_T_C | chr10:50582803 | -2,816 | -960 | -1,920 | — |
| chr10_50556994_T_G | chr10:50556994 | 2,752 | 416 | 2,176 | — |
| chr10_50557036_T_G | chr10:50557036 | 2,752 | 896 | 2,432 | — |
| chr10_50556995_C_A | chr10:50556995 | -2,688 | -448 | -2,176 | — |
| chr10_50557102_G_C | chr10:50557102 | 2,688 | 608 | 832 | — |
| chr10_50556982_T_C | chr10:50556982 | 2,624 | -32 | 2,048 | — |
| chr10_50557039_A_G | chr10:50557039 | 2,624 | 896 | 2,624 | — |
| chr10_50557045_T_A | chr10:50557045 | -2,624 | -352 | -1,536 | — |
| chr10_50557048_A_T | chr10:50557048 | 2,624 | 384 | 704 | — |
| chr10_50557063_T_G | chr10:50557063 | 2,624 | 512 | 1,472 | — |
| chr10_50557069_T_A | chr10:50557069 | -2,624 | -544 | -1,152 | — |
| chr10_50557034_T_G | chr10:50557034 | 2,560 | 800 | 2,944 | — |
| chr10_50556969_T_C | chr10:50556969 | 2,560 | 224 | 1,728 | — |
| chr10_50556991_C_T | chr10:50556991 | -2,560 | -384 | -1,408 | 6.6e-6 |
| chr10_50557057_G_C | chr10:50557057 | 2,560 | 576 | 1,408 | 5.3e-5 |
| chr10_50557092_A_T | chr10:50557092 | 2,560 | 128 | 768 | — |
| chr10_50582789_T_C | chr10:50582789 | -2,560 | -832 | -1,024 | 1.3e-5 |
| chr10_50556980_A_G | chr10:50556980 | -2,496 | -640 | -1,408 | — |
| chr10_50557070_A_T | chr10:50557070 | -2,496 | -480 | -1,152 | — |
| chr10_50557087_C_A | chr10:50557087 | -2,496 | -544 | -1,728 | — |
| chr10_50557027_A_G | chr10:50557027 | 2,432 | 704 | 2,688 | — |
| chr10_50557023_A_C | chr10:50557023 | 2,432 | 608 | 2,624 | — |
| chr10_50556970_T_G | chr10:50556970 | 2,432 | 352 | 2,304 | — |
| chr10_50556983_T_G | chr10:50556983 | 2,432 | 192 | 1,856 | — |
| chr10_50557062_A_T | chr10:50557062 | -2,432 | -480 | -832 | — |
| chr10_50556986_A_G | chr10:50556986 | 2,368 | 160 | 1,664 | — |
| chr10_50556987_T_G | chr10:50556987 | -2,368 | -736 | -832 | — |
| chr10_50557013_C_T | chr10:50557013 | -2,368 | -480 | -1,728 | — |
| chr10_50557016_T_G | chr10:50557016 | -2,368 | -832 | -896 | — |
| chr10_50557037_T_C | chr10:50557037 | 2,368 | 384 | 2,176 | 1.1e-4 |
| chr10_50557053_G_A | chr10:50557053 | 2,368 | 768 | 1,088 | — |
| chr10_50557079_A_C | chr10:50557079 | 2,368 | 320 | 448 | — |
| chr10_50582780_C_G | chr10:50582780 | -2,368 | -608 | -384 | — |
| chr10_50556973_A_C | chr10:50556973 | 2,304 | 800 | 3,008 | — |
| chr10_50556997_G_A | chr10:50556997 | -2,304 | -448 | -2,752 | — |
| chr10_50556981_G_A | chr10:50556981 | -2,304 | -640 | -1,024 | — |
| chr10_50557022_A_G | chr10:50557022 | -2,304 | -736 | 448 | — |
| chr10_50557062_A_C | chr10:50557062 | -2,304 | -608 | -832 | — |
| chr10_50557099_C_A | chr10:50557099 | 2,304 | 672 | 512 | 3.3e-5 |
| chr10_50557032_A_C | chr10:50557032 | 2,240 | 704 | 3,456 | — |
| chr10_50557000_G_C | chr10:50557000 | -2,240 | -288 | -3,200 | — |
| chr10_50557001_C_A | chr10:50557001 | -2,240 | -352 | -2,304 | — |
| chr10_50556967_T_G | chr10:50556967 | 2,240 | 160 | 768 | — |
| chr10_50557054_T_G | chr10:50557054 | 2,240 | 544 | 1,152 | — |
| chr10_50557069_T_C | chr10:50557069 | 2,240 | 480 | 1,088 | — |
| chr10_50557088_T_G | chr10:50557088 | -2,240 | -384 | -832 | 4.7e-2 |
| chr10_50557093_A_C | chr10:50557093 | -2,240 | -512 | 64 | — |
| chr10_50557103_A_T | chr10:50557103 | 2,240 | 352 | 1,024 | — |
| chr10_50582811_T_G | chr10:50582811 | -2,240 | -608 | -1,408 | — |
| chr10_50557036_T_C | chr10:50557036 | 2,176 | 480 | 2,752 | — |
| chr10_50557013_C_G | chr10:50557013 | -2,176 | -640 | -704 | — |
| chr10_50557048_A_C | chr10:50557048 | 2,176 | 288 | 640 | — |
| chr10_50557065_C_A | chr10:50557065 | -2,176 | -192 | -1,536 | — |
| chr10_50582814_T_C | chr10:50582814 | -2,176 | -640 | -1,024 | — |
| chr10_50557018_T_G | chr10:50557018 | 2,112 | 768 | 1,664 | — |
| chr10_50557046_T_G | chr10:50557046 | -2,112 | -544 | -320 | — |
| chr10_50582763_A_G | chr10:50582763 | -2,112 | -640 | 128 | — |
| chr10_50582813_C_T | chr10:50582813 | 2,112 | 704 | 1,024 | — |
| chr10_50556977_G_A | chr10:50556977 | -2,048 | -352 | -1,216 | 5.3e-5 |
| chr10_50556979_G_C | chr10:50556979 | 2,048 | 288 | 1,472 | — |
| chr10_50557006_G_A | chr10:50557006 | -2,048 | -96 | -1,984 | — |
| chr10_50557013_C_A | chr10:50557013 | 2,048 | 608 | 320 | — |
| chr10_50557023_A_G | chr10:50557023 | 2,048 | 288 | 1,152 | — |
| chr10_50557038_A_G | chr10:50557038 | 2,048 | 160 | 2,048 | — |
| chr10_50557079_A_T | chr10:50557079 | 2,048 | 672 | 1,280 | — |
| chr10_50557084_G_T | chr10:50557084 | -2,048 | -288 | -896 | — |
| chr10_50582816_C_A | chr10:50582816 | 2,048 | 704 | 1,024 | — |
| chr10_50557028_A_C | chr10:50557028 | 1,984 | 320 | 3,200 | — |
| chr10_50556976_C_G | chr10:50556976 | 1,984 | 928 | 384 | — |
| chr10_50557021_C_A | chr10:50557021 | -1,984 | -64 | -1,920 | — |
| chr10_50557092_A_G | chr10:50557092 | -1,984 | -448 | -448 | — |
| chr10_50582763_A_C | chr10:50582763 | -1,984 | -576 | -1,536 | — |
| chr10_50557033_A_G | chr10:50557033 | 1,920 | 704 | 2,816 | — |
| chr10_50582782_G_A | chr10:50582782 | -1,920 | -864 | -2,688 | — |
| chr10_50582782_G_T | chr10:50582782 | -1,920 | -864 | -2,688 | — |
| chr10_50557002_C_T | chr10:50557002 | -1,920 | -192 | -2,240 | — |
| chr10_50556968_G_T | chr10:50556968 | -1,920 | -128 | -1,408 | — |
| chr10_50557000_G_A | chr10:50557000 | -1,856 | -640 | -3,136 | 2.6e-5 |
| chr10_50556999_C_A | chr10:50556999 | -1,856 | 32 | -2,688 | 6.6e-6 |
| chr10_50557043_G_T | chr10:50557043 | -1,792 | -448 | -2,432 | — |
| chr10_50556968_G_A | chr10:50556968 | -1,792 | -384 | -2,048 | — |
| chr10_50556975_G_A | chr10:50556975 | -1,792 | -384 | -1,984 | — |
| chr10_50557032_A_G | chr10:50557032 | 1,664 | 544 | 3,008 | — |
| chr10_50557027_A_C | chr10:50557027 | 1,664 | 288 | 2,112 | — |
| chr10_50557024_A_C | chr10:50557024 | 1,600 | 512 | 2,624 | — |
| chr10_50582784_C_T | chr10:50582784 | -1,472 | -736 | -2,944 | — |
| chr10_50556998_C_T | chr10:50556998 | -1,472 | -32 | -2,304 | — |
| chr10_50557020_G_A | chr10:50557020 | -1,408 | -288 | -2,624 | — |
| chr10_50557044_C_T | chr10:50557044 | -1,408 | -192 | -2,176 | — |
| chr10_50557024_A_G | chr10:50557024 | 1,344 | 352 | 2,176 | — |
| chr10_50557044_C_A | chr10:50557044 | -1,280 | -128 | -2,560 | — |
| chr10_50557043_G_A | chr10:50557043 | -1,280 | -256 | -2,240 | 3.3e-5 |
| chr10_50543439_A_C | chr10:50543439 | 1,216 | 320 | 2,560 | — |
| chr10_50582767_A_G | chr10:50582767 | -1,152 | -768 | -2,176 | 6.6e-6 |
| chr10_50557025_T_C | chr10:50557025 | 1,024 | 480 | 2,240 | — |
| chr10_50557038_A_C | chr10:50557038 | 960 | 384 | 3,712 | — |
| chr10_50582782_G_C | chr10:50582782 | -768 | -256 | -2,432 | — |
| chr10_50557030_T_G | chr10:50557030 | 768 | 448 | 2,304 | 6.6e-6 |
| chr10_50582784_C_A | chr10:50582784 | -704 | -608 | -2,688 | — |
| chr10_50582783_G_A | chr10:50582783 | 512 | -192 | -2,048 | 2.0e-5 |
| chr10_50557021_C_T | chr10:50557021 | -256 | -96 | -2,048 | 6.6e-6 |
| chr10_50543538_C_T | chr10:50543538 | -160 | 96 | -2,240 | — |
Showing 200 of 200 in this window. Scores are the raw center bin Δ, ALT minus REF; click a column to sort.