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SLC12A7
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near SLC12A7
chr5:950,383..1,212,063, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr5_958708_C_G | chr5:958708 | 1.000 | 1.000 | 1.000 | — |
| chr5_958712_A_G | chr5:958712 | 1.000 | 1.000 | 1.000 | — |
| chr5_958954_A_T | chr5:958954 | 0.885 | 0.951 | 1.000 | — |
| chr5_958692_G_C | chr5:958692 | 0.863 | 0.795 | 0.892 | — |
| chr5_958938_A_C | chr5:958938 | 0.821 | 0.504 | 1.000 | — |
| chr5_958708_C_A | chr5:958708 | 0.815 | 0.777 | 1.000 | — |
| chr5_958740_A_G | chr5:958740 | 0.779 | 0.644 | 1.000 | — |
| chr5_958786_T_C | chr5:958786 | 0.781 | 0.473 | 1.000 | — |
| chr5_957091_T_C | chr5:957091 | -0.454 | -0.190 | -1.000 | 0.0020% |
| chr5_958744_A_T | chr5:958744 | -0.723 | -0.651 | -1.000 | — |
| chr5_958742_C_G | chr5:958742 | -0.699 | -0.618 | -1.000 | — |
| chr5_958743_A_G | chr5:958743 | -0.631 | -0.629 | -1.000 | — |
| chr5_958744_A_C | chr5:958744 | -0.631 | -0.556 | -0.855 | — |
| chr5_958743_A_C | chr5:958743 | -0.629 | -0.647 | -1.000 | — |
| chr5_958752_C_G | chr5:958752 | -0.617 | -0.543 | -0.501 | — |
| chr5_957511_C_T | chr5:957511 | 0.301 | 0.529 | 1.000 | 0.0013% |
| chr5_958754_G_A | chr5:958754 | -0.573 | -0.551 | -0.574 | — |
| chr5_958774_G_C | chr5:958774 | 0.573 | 0.591 | 0.757 | — |
| chr5_958739_A_C | chr5:958739 | -0.556 | -0.509 | -0.843 | — |
| chr5_957024_C_T | chr5:957024 | -0.452 | -0.278 | -1.000 | <0.001% |
| chr5_958734_A_G | chr5:958734 | -0.538 | -0.470 | -0.904 | — |
| chr5_958727_T_C | chr5:958727 | -0.530 | -0.518 | -0.879 | — |
| chr5_958744_A_G | chr5:958744 | -0.526 | -0.486 | -0.605 | — |
| chr5_958807_A_T | chr5:958807 | 0.465 | 0.400 | 0.940 | — |
| chr5_958839_G_C | chr5:958839 | 0.509 | 0.400 | 0.940 | — |
| chr5_958746_C_G | chr5:958746 | -0.523 | -0.487 | -0.879 | <0.001% |
| chr5_958762_C_G | chr5:958762 | -0.405 | -0.383 | -0.934 | — |
| chr5_958756_T_C | chr5:958756 | 0.458 | 0.158 | 0.916 | — |
| chr5_958743_A_T | chr5:958743 | -0.511 | -0.534 | -0.849 | — |
| chr5_958739_A_T | chr5:958739 | -0.509 | -0.479 | -0.727 | — |
| chr5_958738_A_C | chr5:958738 | -0.508 | -0.521 | -0.794 | — |
| chr5_958747_A_G | chr5:958747 | -0.508 | -0.465 | -0.898 | — |
| chr5_958754_G_C | chr5:958754 | -0.506 | -0.471 | -0.427 | — |
| chr5_958741_C_A | chr5:958741 | 0.501 | 0.797 | 0.794 | — |
| chr5_958746_C_A | chr5:958746 | -0.499 | -0.456 | -0.769 | — |
| chr5_958913_C_T | chr5:958913 | 0.499 | 0.210 | 0.391 | 0.0033% |
| chr5_958731_G_C | chr5:958731 | -0.465 | -0.416 | -0.879 | — |
| chr5_958709_T_C | chr5:958709 | -0.491 | -0.538 | -0.684 | — |
| chr5_958754_G_T | chr5:958754 | -0.491 | -0.445 | -0.440 | — |
| chr5_958954_A_C | chr5:958954 | 0.485 | 0.457 | 0.721 | — |
| chr5_958707_T_A | chr5:958707 | 0.482 | 0.465 | 0.647 | — |
| chr5_958712_A_T | chr5:958712 | 0.482 | 0.477 | 0.537 | — |
| chr5_958738_A_G | chr5:958738 | -0.480 | -0.470 | -0.678 | — |
| chr5_958927_T_G | chr5:958927 | -0.479 | -0.358 | -0.623 | — |
| chr5_958908_G_T | chr5:958908 | -0.475 | -0.478 | -0.440 | — |
| chr5_958755_G_T | chr5:958755 | -0.472 | -0.543 | -0.672 | — |
| chr5_958926_C_G | chr5:958926 | -0.472 | -0.364 | -0.598 | — |
| chr5_958958_G_T | chr5:958958 | 0.465 | 0.332 | 0.244 | — |
| chr5_958923_T_A | chr5:958923 | -0.462 | -0.455 | -0.751 | — |
| chr5_958704_G_T | chr5:958704 | 0.460 | 0.484 | 0.562 | — |
| chr5_958811_C_G | chr5:958811 | -0.436 | -0.397 | -0.818 | — |
| chr5_958956_G_T | chr5:958956 | 0.455 | 0.353 | 0.305 | — |
| chr5_958711_T_C | chr5:958711 | -0.451 | -0.465 | -0.788 | <0.001% |
| chr5_958927_T_A | chr5:958927 | -0.451 | -0.314 | -0.586 | — |
| chr5_958740_A_T | chr5:958740 | 0.446 | 0.382 | 0.794 | — |
| chr5_958837_A_G | chr5:958837 | 0.149 | 0.192 | 0.794 | — |
| chr5_958711_T_G | chr5:958711 | -0.395 | -0.434 | -0.788 | — |
| chr5_957047_G_A | chr5:957047 | -0.293 | -0.152 | -0.830 | <0.001% |
| chr5_958745_A_C | chr5:958745 | -0.434 | -0.451 | -0.715 | — |
| chr5_958729_C_G | chr5:958729 | -0.405 | -0.384 | -0.763 | — |
| chr5_957128_C_T | chr5:957128 | 0.513 | 0.200 | 0.621 | <0.001% |
| chr5_957596_C_T | chr5:957596 | 0.353 | 0.652 | 0.810 | <0.001% |
| chr5_958747_A_C | chr5:958747 | -0.421 | -0.427 | -0.745 | — |
| chr5_958734_A_T | chr5:958734 | -0.393 | -0.330 | -0.745 | — |
| chr5_958816_A_C | chr5:958816 | -0.415 | -0.327 | -0.464 | — |
| chr5_958755_G_A | chr5:958755 | -0.410 | -0.492 | -0.623 | — |
| chr5_958839_G_T | chr5:958839 | 0.381 | 0.338 | 0.733 | — |
| chr5_958756_T_A | chr5:958756 | -0.403 | -0.530 | -0.379 | — |
| chr5_958736_A_T | chr5:958736 | -0.402 | -0.390 | -0.525 | — |
| chr5_958732_G_T | chr5:958732 | -0.397 | -0.318 | -0.635 | — |
| chr5_958908_G_C | chr5:958908 | -0.397 | -0.436 | -0.452 | — |
| chr5_958791_G_C | chr5:958791 | 0.395 | 0.153 | 0.501 | — |
| chr5_958832_G_C | chr5:958832 | -0.391 | -0.405 | -0.562 | — |
| chr5_958729_C_A | chr5:958729 | -0.345 | -0.339 | -0.696 | — |
| chr5_958926_C_A | chr5:958926 | -0.390 | -0.314 | -0.501 | — |
| chr5_958958_G_C | chr5:958958 | 0.390 | 0.226 | 0.171 | 0.126% |
| chr5_958732_G_A | chr5:958732 | -0.388 | -0.316 | -0.660 | 0.0013% |
| chr5_958752_C_A | chr5:958752 | -0.388 | -0.330 | -0.354 | — |
| chr5_958804_C_A | chr5:958804 | -0.388 | -0.294 | -0.537 | — |
| chr5_958739_A_G | chr5:958739 | -0.383 | -0.368 | -0.489 | — |
| chr5_958753_A_C | chr5:958753 | -0.383 | -0.395 | -0.244 | — |
| chr5_958734_A_C | chr5:958734 | 0.381 | 0.284 | 0.489 | — |
| chr5_958742_C_T | chr5:958742 | -0.381 | -0.351 | -0.611 | — |
| chr5_958755_G_C | chr5:958755 | -0.379 | -0.479 | -0.415 | — |
| chr5_958716_T_A | chr5:958716 | 0.376 | 0.283 | 0.391 | — |
| chr5_958875_G_A | chr5:958875 | 0.280 | 0.164 | 0.672 | 1.01% |
| chr5_958737_C_T | chr5:958737 | -0.373 | -0.304 | -0.537 | — |
| chr5_958931_C_G | chr5:958931 | -0.373 | -0.374 | -0.452 | — |
| chr5_958766_G_T | chr5:958766 | -0.371 | -0.288 | -0.489 | — |
| chr5_958730_T_G | chr5:958730 | -0.335 | -0.316 | -0.660 | — |
| chr5_958753_A_T | chr5:958753 | -0.369 | -0.390 | -0.232 | — |
| chr5_958811_C_A | chr5:958811 | -0.313 | -0.287 | -0.660 | — |
| chr5_958851_G_A | chr5:958851 | -0.369 | -0.223 | -0.489 | — |
| chr5_958918_A_T | chr5:958918 | -0.369 | -0.301 | -0.403 | — |
| chr5_958924_T_G | chr5:958924 | -0.369 | -0.192 | -0.134 | — |
| chr5_958814_G_A | chr5:958814 | -0.368 | -0.265 | -0.611 | — |
| chr5_958745_A_G | chr5:958745 | -0.366 | -0.373 | -0.556 | — |
| chr5_958692_G_T | chr5:958692 | 0.364 | 0.371 | 0.342 | — |
| chr5_958735_A_T | chr5:958735 | -0.362 | -0.374 | -0.574 | — |
| chr5_958838_T_G | chr5:958838 | 0.362 | 0.281 | 0.550 | — |
| chr5_958832_G_T | chr5:958832 | -0.361 | -0.343 | -0.525 | — |
| chr5_957130_G_A | chr5:957130 | -0.303 | -0.152 | -0.686 | <0.001% |
| chr5_958715_C_A | chr5:958715 | -0.359 | -0.325 | -0.611 | — |
| chr5_958893_C_A | chr5:958893 | -0.359 | -0.395 | -0.513 | — |
| chr5_958913_C_A | chr5:958913 | 0.359 | 0.242 | 0.269 | — |
| chr5_958942_A_C | chr5:958942 | 0.359 | 0.278 | 0.269 | — |
| chr5_958753_A_G | chr5:958753 | -0.356 | -0.382 | -0.232 | — |
| chr5_958835_G_C | chr5:958835 | -0.303 | -0.286 | -0.635 | — |
| chr5_958719_A_C | chr5:958719 | 0.354 | 0.360 | 0.586 | — |
| chr5_957130_G_T | chr5:957130 | -0.287 | -0.157 | -0.673 | 0.0020% |
| chr5_958706_T_C | chr5:958706 | 0.349 | 0.371 | 0.550 | <0.001% |
| chr5_958813_G_C | chr5:958813 | -0.349 | -0.275 | -0.550 | — |
| chr5_958831_G_T | chr5:958831 | -0.323 | -0.387 | -0.623 | — |
| chr5_958932_A_T | chr5:958932 | -0.349 | -0.205 | -0.037 | — |
| chr5_957027_A_G | chr5:957027 | -0.278 | -0.139 | -0.660 | 0.0066% |
| chr5_957065_C_T | chr5:957065 | -0.252 | -0.091 | -0.660 | 0.0033% |
| chr5_957610_G_A | chr5:957610 | 0.282 | 0.206 | 0.660 | <0.001% |
| chr5_958748_G_A | chr5:958748 | 0.345 | 0.374 | 0.415 | — |
| chr5_958783_T_C | chr5:958783 | -0.342 | -0.308 | -0.513 | — |
| chr5_958752_C_T | chr5:958752 | -0.340 | -0.203 | -0.220 | — |
| chr5_957049_C_A | chr5:957049 | -0.311 | -0.209 | -0.647 | <0.001% |
| chr5_958830_G_T | chr5:958830 | -0.335 | -0.234 | -0.379 | — |
| chr5_958872_G_C | chr5:958872 | -0.335 | -0.247 | -0.391 | — |
| chr5_958709_T_A | chr5:958709 | 0.333 | 0.501 | 0.525 | — |
| chr5_958930_C_T | chr5:958930 | -0.332 | -0.262 | -0.501 | — |
| chr5_958735_A_G | chr5:958735 | -0.330 | -0.330 | -0.562 | — |
| chr5_958833_G_A | chr5:958833 | -0.227 | -0.338 | -0.586 | — |
| chr5_958934_G_C | chr5:958934 | 0.328 | 0.236 | 0.452 | — |
| chr5_958835_G_A | chr5:958835 | -0.325 | -0.283 | -0.464 | — |
| chr5_957600_C_G | chr5:957600 | -0.315 | -0.641 | -0.614 | <0.001% |
| chr5_958812_T_C | chr5:958812 | -0.320 | -0.283 | -0.550 | — |
| chr5_958716_T_C | chr5:958716 | -0.315 | -0.266 | -0.342 | — |
| chr5_958757_A_T | chr5:958757 | -0.315 | -0.288 | -0.305 | — |
| chr5_958800_C_A | chr5:958800 | 0.315 | 0.252 | 0.244 | <0.001% |
| chr5_958800_C_G | chr5:958800 | 0.315 | 0.252 | 0.427 | — |
| chr5_958729_C_T | chr5:958729 | 0.313 | 0.416 | 0.379 | — |
| chr5_958737_C_G | chr5:958737 | -0.313 | -0.306 | -0.440 | — |
| chr5_958699_C_T | chr5:958699 | -0.309 | -0.266 | -0.537 | — |
| chr5_958740_A_C | chr5:958740 | -0.309 | -0.270 | -0.293 | — |
| chr5_958798_G_C | chr5:958798 | -0.309 | -0.231 | -0.342 | — |
| chr5_957451_A_G | chr5:957451 | 0.115 | 0.182 | 0.588 | 0.0013% |
| chr5_958737_C_A | chr5:958737 | -0.308 | -0.266 | -0.476 | — |
| chr5_958761_G_T | chr5:958761 | -0.272 | -0.296 | -0.550 | — |
| chr5_958833_G_T | chr5:958833 | -0.246 | -0.270 | -0.550 | — |
| chr5_958851_G_C | chr5:958851 | -0.224 | -0.226 | -0.550 | — |
| chr5_958907_T_G | chr5:958907 | -0.256 | -0.317 | -0.550 | — |
| chr5_958922_G_C | chr5:958922 | -0.308 | -0.236 | -0.403 | — |
| chr5_958950_G_C | chr5:958950 | 0.308 | 0.312 | 0.391 | <0.001% |
| chr5_958711_T_A | chr5:958711 | -0.306 | -0.351 | -0.531 | — |
| chr5_958830_G_C | chr5:958830 | -0.284 | -0.353 | -0.537 | — |
| chr5_958812_T_G | chr5:958812 | -0.299 | -0.288 | -0.513 | — |
| chr5_958697_C_A | chr5:958697 | -0.260 | -0.304 | -0.525 | — |
| chr5_958714_T_C | chr5:958714 | 0.294 | 0.313 | 0.452 | — |
| chr5_958924_T_C | chr5:958924 | -0.294 | -0.234 | -0.379 | — |
| chr5_958733_G_C | chr5:958733 | 0.289 | 0.343 | 0.342 | — |
| chr5_958794_T_A | chr5:958794 | 0.289 | 0.286 | 0.379 | — |
| chr5_958836_G_C | chr5:958836 | -0.287 | -0.210 | -0.305 | — |
| chr5_958860_C_G | chr5:958860 | 0.287 | 0.294 | 0.391 | — |
| chr5_958869_G_C | chr5:958869 | -0.287 | -0.174 | -0.318 | — |
| chr5_958902_C_A | chr5:958902 | -0.287 | -0.301 | -0.305 | — |
| chr5_958932_A_G | chr5:958932 | -0.287 | -0.195 | -0.269 | — |
| chr5_958710_T_G | chr5:958710 | 0.285 | 0.247 | 0.366 | — |
| chr5_958756_T_G | chr5:958756 | -0.285 | -0.379 | -0.269 | — |
| chr5_958745_A_T | chr5:958745 | -0.282 | -0.105 | -0.171 | — |
| chr5_958850_A_G | chr5:958850 | -0.179 | -0.210 | -0.501 | — |
| chr5_958781_T_A | chr5:958781 | 0.279 | 0.356 | 0.464 | — |
| chr5_958774_G_T | chr5:958774 | 0.277 | 0.258 | 0.427 | — |
| chr5_958779_G_T | chr5:958779 | 0.277 | 0.226 | 0.330 | — |
| chr5_958810_C_G | chr5:958810 | -0.215 | -0.306 | -0.495 | — |
| chr5_958929_G_C | chr5:958929 | -0.277 | -0.158 | -0.085 | — |
| chr5_957717_C_T | chr5:957717 | 0.332 | 0.364 | 0.418 | <0.001% |
| chr5_958757_A_C | chr5:958757 | -0.274 | -0.252 | -0.183 | — |
| chr5_958758_C_A | chr5:958758 | -0.159 | -0.230 | -0.489 | 0.0013% |
| chr5_958772_C_A | chr5:958772 | 0.274 | 0.462 | 0.476 | — |
| chr5_958816_A_T | chr5:958816 | -0.274 | -0.197 | -0.305 | — |
| chr5_958933_G_T | chr5:958933 | -0.274 | -0.223 | -0.281 | — |
| chr5_958699_C_A | chr5:958699 | -0.272 | -0.199 | -0.427 | — |
| chr5_958807_A_C | chr5:958807 | 0.270 | 0.156 | 0.403 | — |
| chr5_958732_G_C | chr5:958732 | -0.267 | -0.186 | -0.476 | — |
| chr5_958810_C_A | chr5:958810 | -0.207 | -0.187 | -0.476 | — |
| chr5_958864_G_A | chr5:958864 | -0.267 | -0.205 | -0.452 | — |
| chr5_958934_G_A | chr5:958934 | 0.267 | 0.210 | 0.427 | <0.001% |
| chr5_958936_G_A | chr5:958936 | 0.267 | 0.195 | 0.366 | — |
| chr5_958817_A_T | chr5:958817 | -0.262 | -0.164 | -0.366 | — |
| chr5_958747_A_T | chr5:958747 | -0.260 | -0.165 | -0.293 | — |
| chr5_958785_G_T | chr5:958785 | 0.224 | 0.231 | 0.464 | — |
| chr5_958867_C_G | chr5:958867 | 0.133 | -0.029 | 0.464 | <0.001% |
| chr5_958891_T_C | chr5:958891 | 0.246 | 0.218 | 0.464 | — |
| chr5_957646_G_A | chr5:957646 | -0.276 | -0.508 | -0.490 | <0.001% |
| chr5_958723_G_A | chr5:958723 | 0.243 | 0.145 | 0.452 | 0.248% |
| chr5_958761_G_C | chr5:958761 | -0.231 | -0.251 | -0.452 | — |
| chr5_958784_G_C | chr5:958784 | 0.253 | 0.153 | 0.281 | — |
| chr5_958838_T_A | chr5:958838 | 0.253 | 0.177 | 0.281 | — |
| chr5_958887_G_A | chr5:958887 | -0.248 | -0.309 | -0.452 | — |
| chr5_958911_C_A | chr5:958911 | -0.222 | -0.252 | -0.452 | — |
| chr5_957645_G_A | chr5:957645 | -0.301 | -0.465 | -0.444 | <0.001% |
| chr5_958736_A_C | chr5:958736 | -0.250 | -0.243 | -0.391 | — |
| chr5_958912_C_T | chr5:958912 | 0.250 | 0.132 | 0.098 | — |
| chr5_958928_G_C | chr5:958928 | -0.250 | -0.205 | -0.195 | — |
| chr5_957063_A_G | chr5:957063 | -0.299 | -0.214 | -0.359 | <0.001% |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.