Home / Gene

SLC49A3

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near SLC49A3

chr4:581,828..789,151, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr4_610932_C_A	chr4:610932	0.269	0.249	1.000	<0.001%
chr4_602840_G_A	chr4:602840	-0.652	-0.436	-1.000	0.0013%
chr4_610901_G_A	chr4:610901	-0.288	-0.137	-1.000	<0.001%
chr4_602843_T_A	chr4:602843	0.582	0.281	0.641	<0.001%
chr4_633999_T_G	chr4:633999	-0.086	-0.263	-0.817	—
chr4_602842_G_T	chr4:602842	-0.332	-0.264	-0.814	<0.001%
chr4_617922_C_T	chr4:617922	0.344	0.288	0.765	<0.001%
chr4_610654_C_T	chr4:610654	-0.422	-0.315	-0.601	<0.001%
chr4_610884_G_C	chr4:610884	-0.337	-0.280	-0.647	<0.001%
chr4_602908_C_T	chr4:602908	0.263	0.188	0.641	0.0020%
chr4_602838_T_A	chr4:602838	-0.325	-0.270	-0.608	<0.001%
chr4_610885_G_C	chr4:610885	-0.195	-0.147	-0.595	0.0039%
chr4_611014_G_A	chr4:611014	0.171	0.069	0.582	<0.001%
chr4_602842_G_A	chr4:602842	0.357	0.091	0.301	10.6%
chr4_602852_C_G	chr4:602852	-0.300	-0.214	-0.513	<0.001%
chr4_610956_G_T	chr4:610956	-0.156	-0.051	-0.497	0.011%
chr4_633994_A_G	chr4:633994	-0.035	-0.159	-0.449	—
chr4_617996_G_A	chr4:617996	0.089	0.096	0.444	0.309%
chr4_633997_A_G	chr4:633997	-0.033	-0.142	-0.394	—
chr4_602841_C_T	chr4:602841	-0.128	-0.136	-0.415	<0.001%
chr4_634011_G_C	chr4:634011	0.018	0.125	0.388	—
chr4_610753_C_T	chr4:610753	0.223	0.252	0.405	<0.001%
chr4_634007_G_C	chr4:634007	0.017	0.119	0.379	—
chr4_602819_T_C	chr4:602819	-0.219	-0.216	-0.402	0.0033%
chr4_582086_A_G	chr4:582086	-0.089	-0.115	-0.395	<0.001%
chr4_634011_G_T	chr4:634011	0.020	0.132	0.369	—
chr4_617937_A_T	chr4:617937	-0.100	-0.179	-0.392	0.523%
chr4_618027_C_G	chr4:618027	0.107	0.073	0.386	0.0013%
chr4_634007_G_A	chr4:634007	0.017	0.125	0.360	<0.001%
chr4_634007_G_T	chr4:634007	0.019	0.126	0.360	—
chr4_617995_C_T	chr4:617995	0.086	0.080	0.382	0.0020%
chr4_633989_A_G	chr4:633989	-0.017	-0.106	-0.357	—
chr4_610966_C_G	chr4:610966	-0.125	-0.081	-0.379	<0.001%
chr4_633987_T_G	chr4:633987	-0.032	-0.118	-0.345	<0.001%
chr4_634003_G_C	chr4:634003	-0.003	0.110	0.345	—
chr4_610740_G_T	chr4:610740	-0.232	-0.222	-0.150	<0.001%
chr4_634011_G_A	chr4:634011	0.018	0.125	0.339	—
chr4_610880_C_A	chr4:610880	0.067	0.198	-0.359	0.0013%
chr4_610764_C_T	chr4:610764	0.225	0.203	0.301	0.0020%
chr4_634003_G_A	chr4:634003	0.007	0.113	0.333	<0.001%
chr4_634003_G_T	chr4:634003	0.004	0.112	0.318	—
chr4_634010_G_C	chr4:634010	0.014	0.096	0.318	—
chr4_634008_G_C	chr4:634008	0.018	0.088	0.315	—
chr4_610966_C_T	chr4:610966	-0.094	-0.065	-0.333	<0.001%
chr4_634006_G_C	chr4:634006	0.015	0.096	0.311	—
chr4_634010_G_A	chr4:634010	0.019	0.104	0.305	—
chr4_634010_G_T	chr4:634010	0.018	0.101	0.305	—
chr4_617800_C_T	chr4:617800	0.040	0.013	0.320	<0.001%
chr4_634006_G_A	chr4:634006	0.019	0.104	0.299	—
chr4_610813_C_T	chr4:610813	0.199	0.150	0.288	<0.001%
chr4_610707_G_T	chr4:610707	-0.107	-0.113	-0.307	<0.001%
chr4_617882_C_A	chr4:617882	0.140	0.163	0.307	<0.001%
chr4_634008_G_A	chr4:634008	0.015	0.094	0.284	—
chr4_610610_G_T	chr4:610610	-0.111	-0.136	-0.301	<0.001%
chr4_610787_A_G	chr4:610787	0.085	0.099	0.301	<0.001%
chr4_634004_G_C	chr4:634004	0.011	0.087	0.281	—
chr4_634006_G_T	chr4:634006	0.018	0.100	0.281	—
chr4_610722_A_G	chr4:610722	0.186	0.142	0.275	0.0013%
chr4_634008_G_T	chr4:634008	0.017	0.091	0.272	—
chr4_602935_C_A	chr4:602935	0.179	0.128	0.288	0.0013%
chr4_617814_A_G	chr4:617814	0.052	0.008	0.288	<0.001%
chr4_634002_G_C	chr4:634002	0.009	0.082	0.269	—
chr4_610924_A_G	chr4:610924	0.101	0.126	0.281	0.0013%
chr4_634004_G_T	chr4:634004	0.011	0.087	0.263	0.0020%
chr4_610694_C_G	chr4:610694	-0.176	-0.152	-0.209	0.0099%
chr4_610899_G_A	chr4:610899	0.095	0.062	0.275	0.104%
chr4_610975_C_T	chr4:610975	-0.064	-0.042	-0.275	0.0039%
chr4_617944_G_A	chr4:617944	0.080	0.102	0.275	0.0013%
chr4_634004_G_A	chr4:634004	0.009	0.083	0.256	—
chr4_634012_G_C	chr4:634012	0.009	0.086	0.256	—
chr4_582026_G_C	chr4:582026	-0.042	-0.201	-0.271	<0.001%
chr4_617828_A_G	chr4:617828	0.154	0.208	0.268	<0.001%
chr4_634012_G_T	chr4:634012	0.013	0.092	0.250	<0.001%
chr4_618003_G_A	chr4:618003	-0.048	-0.024	-0.258	0.0013%
chr4_618090_C_G	chr4:618090	0.066	0.093	0.258	<0.001%
chr4_633985_A_G	chr4:633985	-0.010	-0.073	-0.241	—
chr4_610808_A_G	chr4:610808	-0.110	-0.099	-0.248	<0.001%
chr4_634002_G_A	chr4:634002	0.009	0.081	0.232	—
chr4_634002_G_T	chr4:634002	0.015	0.079	0.232	—
chr4_610615_G_A	chr4:610615	-0.153	-0.080	-0.235	0.032%
chr4_617844_C_T	chr4:617844	-0.068	-0.115	-0.242	0.0013%
chr4_617899_A_G	chr4:617899	-0.095	-0.078	-0.242	2.56%
chr4_618074_G_A	chr4:618074	0.035	0.054	0.239	<0.001%
chr4_610922_C_T	chr4:610922	-0.019	-0.014	-0.235	<0.001%
chr4_634012_G_A	chr4:634012	0.014	0.087	0.220	0.178%
chr4_602855_T_C	chr4:602855	-0.145	-0.061	-0.180	<0.001%
chr4_602729_G_C	chr4:602729	0.059	0.026	0.229	<0.001%
chr4_610935_T_C	chr4:610935	0.056	0.051	0.229	0.0013%
chr4_617806_A_C	chr4:617806	-0.042	-0.067	-0.229	<0.001%
chr4_617850_C_T	chr4:617850	-0.075	-0.021	-0.229	<0.001%
chr4_617817_T_C	chr4:617817	0.049	0.058	0.222	0.0013%
chr4_617837_C_G	chr4:617837	-0.079	-0.125	-0.219	0.0013%
chr4_617866_C_G	chr4:617866	0.070	0.062	0.216	<0.001%
chr4_617918_G_A	chr4:617918	-0.069	-0.061	-0.216	0.0020%
chr4_602859_G_C	chr4:602859	0.130	0.089	0.154	0.0039%
chr4_618005_A_G	chr4:618005	-0.035	-0.042	-0.206	0.0026%
chr4_610659_G_T	chr4:610659	-0.086	-0.051	-0.203	<0.001%
chr4_618013_C_T	chr4:618013	-0.018	0.024	-0.203	0.0013%
chr4_602810_C_G	chr4:602810	0.102	0.065	0.196	<0.001%
chr4_610788_T_C	chr4:610788	0.074	0.067	0.196	<0.001%
chr4_602844_G_A	chr4:602844	0.123	0.094	0.144	0.0020%
chr4_618085_A_G	chr4:618085	0.123	0.053	0.013	<0.001%
chr4_633981_T_G	chr4:633981	-0.009	-0.050	-0.180	—
chr4_610840_G_A	chr4:610840	0.105	0.065	0.190	0.012%
chr4_617884_A_G	chr4:617884	-0.090	-0.099	-0.190	2.38%
chr4_618037_T_C	chr4:618037	0.013	0.019	0.186	0.0013%
chr4_610850_G_A	chr4:610850	0.056	0.008	0.183	<0.001%
chr4_617833_C_G	chr4:617833	-0.098	-0.109	-0.183	<0.001%
chr4_618137_C_T	chr4:618137	-0.025	-0.054	-0.183	0.0013%
chr4_610522_T_G	chr4:610522	0.066	0.011	0.176	0.0013%
chr4_610737_A_T	chr4:610737	0.036	0.094	0.176	<0.001%
chr4_617834_G_C	chr4:617834	-0.051	-0.105	-0.176	0.0026%
chr4_617838_G_A	chr4:617838	0.047	0.042	0.176	<0.001%
chr4_617857_C_T	chr4:617857	-0.081	-0.072	-0.176	<0.001%
chr4_618148_G_C	chr4:618148	0.103	0.137	0.176	<0.001%
chr4_610958_A_C	chr4:610958	-0.110	-0.072	-0.157	<0.001%
chr4_610734_A_G	chr4:610734	-0.109	-0.065	-0.013	0.028%
chr4_633961_A_G	chr4:633961	-0.007	-0.015	-0.156	—
chr4_634009_T_A	chr4:634009	0.006	0.051	0.156	—
chr4_582031_C_T	chr4:582031	-0.051	-0.125	-0.163	<0.001%
chr4_610528_C_A	chr4:610528	-0.040	-0.037	-0.163	<0.001%
chr4_610735_C_T	chr4:610735	-0.099	-0.109	-0.163	0.0026%
chr4_610986_G_A	chr4:610986	-0.073	-0.070	-0.163	0.018%
chr4_617826_G_T	chr4:617826	-0.041	-0.058	-0.163	<0.001%
chr4_602775_A_C	chr4:602775	-0.101	-0.081	-0.085	0.029%
chr4_602829_G_A	chr4:602829	-0.084	-0.053	-0.160	<0.001%
chr4_610819_T_C	chr4:610819	0.101	0.032	0.157	0.041%
chr4_582137_T_C	chr4:582137	0.095	0.188	0.157	<0.001%
chr4_617860_G_T	chr4:617860	-0.078	-0.043	-0.157	<0.001%
chr4_618059_C_T	chr4:618059	0.020	0.026	0.157	0.0099%
chr4_602796_C_G	chr4:602796	0.094	0.032	0.105	0.0039%
chr4_634005_T_A	chr4:634005	0.005	0.058	0.137	—
chr4_618016_G_A	chr4:618016	-0.019	-0.021	-0.144	<0.001%
chr4_618085_A_C	chr4:618085	0.091	-0.002	-0.062	<0.001%
chr4_617941_T_G	chr4:617941	-0.090	-0.064	-0.072	<0.001%
chr4_581984_T_C	chr4:581984	0.047	0.077	0.141	0.0013%
chr4_610562_C_A	chr4:610562	0.041	0.086	0.137	0.043%
chr4_610614_C_T	chr4:610614	-0.039	-0.014	-0.137	0.0013%
chr4_633993_T_G	chr4:633993	-0.009	-0.050	-0.128	—
chr4_611319_G_A	chr4:611319	0.015	0.018	0.134	0.206%
chr4_582034_T_A	chr4:582034	-0.008	-0.077	-0.131	0.060%
chr4_610699_C_G	chr4:610699	0.058	0.062	0.131	0.0039%
chr4_617834_G_A	chr4:617834	-0.046	-0.069	-0.131	0.412%
chr4_634009_T_G	chr4:634009	0.002	0.062	0.119	—
chr4_582144_T_C	chr4:582144	0.079	0.134	0.098	0.0039%
chr4_610557_A_C	chr4:610557	-0.060	-0.048	-0.124	0.0013%
chr4_610659_G_A	chr4:610659	-0.077	-0.013	-0.059	0.022%
chr4_602883_C_A	chr4:602883	-0.035	-0.030	-0.121	0.0013%
chr4_618079_T_C	chr4:618079	-0.075	-0.013	0.069	<0.001%
chr4_581919_A_G	chr4:581919	0.049	0.086	0.118	0.0013%
chr4_581962_C_A	chr4:581962	0.012	-0.105	-0.118	<0.001%
chr4_610644_C_G	chr4:610644	-0.074	-0.062	-0.046	<0.001%
chr4_610647_T_A	chr4:610647	-0.044	-0.037	-0.118	<0.001%
chr4_610897_G_C	chr4:610897	0.042	0.069	-0.118	<0.001%
chr4_618020_C_T	chr4:618020	-0.022	-0.006	-0.118	0.0066%
chr4_581946_G_T	chr4:581946	-0.020	-0.089	-0.114	<0.001%
chr4_602890_G_C	chr4:602890	-0.071	-0.037	-0.095	<0.001%
chr4_610747_G_A	chr4:610747	-0.071	-0.070	-0.072	<0.001%
chr4_602511_G_T	chr4:602511	-0.012	-0.005	-0.111	0.0026%
chr4_602891_G_A	chr4:602891	-0.058	-0.026	-0.111	<0.001%
chr4_610898_C_A	chr4:610898	-0.042	-0.037	-0.111	<0.001%
chr4_618026_C_T	chr4:618026	0.010	0.006	0.111	0.0013%
chr4_618191_G_T	chr4:618191	-0.001	-0.022	-0.111	<0.001%
chr4_602786_A_G	chr4:602786	0.069	0.010	0.085	0.0013%
chr4_610972_C_G	chr4:610972	-0.069	-0.046	-0.105	0.0079%
chr4_581878_A_G	chr4:581878	0.000	-0.010	0.108	0.0026%
chr4_618007_C_T	chr4:618007	-0.009	-0.008	-0.108	0.0013%
chr4_618066_G_T	chr4:618066	-0.006	0.022	0.108	<0.001%
chr4_633984_G_C	chr4:633984	0.000	0.021	0.101	—
chr4_634001_A_G	chr4:634001	-0.001	-0.023	-0.101	—
chr4_602895_C_T	chr4:602895	0.054	0.069	0.105	<0.001%
chr4_610964_G_A	chr4:610964	0.029	0.035	0.105	<0.001%
chr4_618014_G_A	chr4:618014	0.003	0.018	0.105	0.334%
chr4_618024_G_T	chr4:618024	-0.048	-0.024	-0.105	<0.001%
chr4_618165_G_A	chr4:618165	0.023	0.032	0.105	<0.001%
chr4_633998_G_C	chr4:633998	0.011	0.032	0.098	—
chr4_610810_C_A	chr4:610810	-0.064	-0.061	-0.078	0.0013%
chr4_602920_G_A	chr4:602920	-0.063	0.008	-0.065	<0.001%
chr4_602881_C_T	chr4:602881	0.062	0.062	0.056	0.011%
chr4_610548_C_T	chr4:610548	-0.004	-0.026	-0.098	<0.001%
chr4_610658_C_T	chr4:610658	0.037	0.133	0.098	0.0099%
chr4_610784_A_G	chr4:610784	0.052	0.038	0.098	<0.001%
chr4_617996_G_C	chr4:617996	-0.011	-0.003	-0.098	0.0020%
chr4_618216_C_T	chr4:618216	-0.025	-0.032	-0.098	<0.001%
chr4_628554_C_A	chr4:628554	-0.004	-0.016	-0.098	0.0013%
chr4_628583_C_G	chr4:628583	-0.005	0.000	-0.098	<0.001%
chr4_634016_C_T	chr4:634016	-0.011	-0.032	-0.092	0.0013%
chr4_618064_C_T	chr4:618064	-0.036	-0.013	-0.095	<0.001%
chr4_633962_G_C	chr4:633962	0.006	0.012	0.089	0.0026%
chr4_633965_G_C	chr4:633965	0.009	0.010	0.089	—
chr4_634001_A_T	chr4:634001	0.001	0.027	0.089	—
chr4_634018_C_T	chr4:634018	-0.007	-0.026	-0.089	0.024%
chr4_581879_T_G	chr4:581879	-0.059	-0.070	-0.042	<0.001%
chr4_582158_T_C	chr4:582158	-0.059	-0.088	-0.041	<0.001%
chr4_610594_C_T	chr4:610594	-0.059	-0.040	-0.065	0.0013%
chr4_581925_T_C	chr4:581925	-0.043	-0.129	-0.092	<0.001%
chr4_582054_G_T	chr4:582054	-0.022	-0.129	-0.092	0.0013%
chr4_602765_A_C	chr4:602765	0.039	0.011	0.092	<0.001%
chr4_602797_A_G	chr4:602797	0.058	0.024	0.092	<0.001%
chr4_602878_C_A	chr4:602878	-0.047	-0.027	-0.092	0.040%

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.