SLC6A18

Scored variants near SLC6A18

chr5:1,125,380..1,346,189, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr5_1140493_G_A	chr5:1140493	-1.000	-1.000	-1.000	0.0010%
chr5_1140484_C_T	chr5:1140484	-1.000	-1.000	-1.000	<0.001%
chr5_1140485_C_G	chr5:1140485	-1.000	-1.000	-1.000	0.0018%
chr5_1140485_C_T	chr5:1140485	-1.000	-1.000	-1.000	<0.001%
chr5_1161343_A_T	chr5:1161343	-0.369	-0.613	-1.000	0.079%
chr5_1138778_G_T	chr5:1138778	1.000	1.000	1.000	<0.001%
chr5_1130733_A_C	chr5:1130733	0.633	0.845	1.000	0.0013%
chr5_1140472_G_C	chr5:1140472	-1.000	-0.425	-0.719	0.024%
chr5_1161346_C_T	chr5:1161346	-0.215	-0.524	-1.000	0.0013%
chr5_1130458_C_T	chr5:1130458	0.190	0.367	1.000	<0.001%
chr5_1140481_G_A	chr5:1140481	-0.730	-0.348	-0.510	<0.001%
chr5_1142073_G_A	chr5:1142073	0.337	0.238	1.000	0.0013%
chr5_1130449_C_T	chr5:1130449	0.103	0.193	0.889	0.156%
chr5_1161369_A_C	chr5:1161369	-0.262	-0.307	-0.882	<0.001%
chr5_1140501_G_A	chr5:1140501	0.548	0.278	0.575	0.017%
chr5_1140560_G_A	chr5:1140560	-0.540	-0.227	-0.248	<0.001%
chr5_1138712_C_T	chr5:1138712	0.364	0.474	0.778	<0.001%
chr5_1140551_C_A	chr5:1140551	0.487	0.208	0.288	<0.001%
chr5_1130860_C_T	chr5:1130860	0.210	0.280	0.693	0.0039%
chr5_1142069_G_C	chr5:1142069	0.091	0.055	0.632	<0.001%
chr5_1131104_G_A	chr5:1131104	0.239	0.404	0.621	0.225%
chr5_1140498_G_A	chr5:1140498	0.388	0.166	0.183	0.0032%
chr5_1130841_T_A	chr5:1130841	0.159	0.192	0.608	<0.001%
chr5_1155999_G_A	chr5:1155999	0.138	0.130	0.592	0.0020%
chr5_1140526_C_A	chr5:1140526	-0.371	-0.131	-0.183	0.0026%
chr5_1130478_C_G	chr5:1130478	0.031	0.164	0.575	<0.001%
chr5_1130461_A_T	chr5:1130461	0.091	0.169	0.569	<0.001%
chr5_1130781_G_T	chr5:1130781	0.206	0.208	0.549	<0.001%
chr5_1138716_C_T	chr5:1138716	0.333	0.396	0.549	0.0013%
chr5_1138767_T_C	chr5:1138767	0.343	0.436	0.497	<0.001%
chr5_1140552_G_A	chr5:1140552	-0.328	-0.147	-0.399	0.0033%
chr5_1130832_C_A	chr5:1130832	0.153	0.227	0.510	0.0013%
chr5_1142137_C_G	chr5:1142137	0.240	0.175	0.489	0.0013%
chr5_1130805_G_T	chr5:1130805	0.031	0.061	0.464	0.0046%
chr5_1161324_C_T	chr5:1161324	-0.140	-0.160	-0.464	0.011%
chr5_1140458_C_T	chr5:1140458	-0.291	-0.089	-0.170	0.0013%
chr5_1130471_A_G	chr5:1130471	0.052	0.128	0.458	0.0025%
chr5_1138798_G_A	chr5:1138798	-0.226	-0.398	-0.451	<0.001%
chr5_1130776_G_A	chr5:1130776	0.033	0.035	0.444	0.0020%
chr5_1138770_A_C	chr5:1138770	0.279	0.337	0.444	0.0099%
chr5_1130457_C_A	chr5:1130457	0.052	0.101	0.431	<0.001%
chr5_1130474_C_T	chr5:1130474	0.070	0.135	0.425	<0.001%
chr5_1155218_G_C	chr5:1155218	0.014	0.034	0.422	<0.001%
chr5_1161349_C_T	chr5:1161349	-0.027	-0.085	-0.418	0.0072%
chr5_1161335_T_A	chr5:1161335	-0.258	-0.430	-0.379	<0.001%
chr5_1161349_C_A	chr5:1161349	-0.021	-0.054	-0.405	0.0020%
chr5_1155945_G_A	chr5:1155945	0.057	0.123	0.398	<0.001%
chr5_1130807_G_A	chr5:1130807	-0.151	-0.161	-0.392	0.0039%
chr5_1131128_C_G	chr5:1131128	0.194	0.157	0.392	14.5%
chr5_1141991_C_A	chr5:1141991	0.165	0.190	0.382	0.0053%
chr5_1138711_G_A	chr5:1138711	-0.215	-0.364	-0.379	<0.001%
chr5_1161311_C_T	chr5:1161311	0.000	0.246	0.379	0.269%
chr5_1161316_C_A	chr5:1161316	0.101	0.021	-0.379	0.0046%
chr5_1161192_G_A	chr5:1161192	0.106	0.206	0.373	0.0085%
chr5_1138655_A_C	chr5:1138655	-0.234	-0.195	-0.203	<0.001%
chr5_1140480_G_A	chr5:1140480	-0.233	-0.144	-0.052	0.032%
chr5_1130642_C_G	chr5:1130642	-0.057	-0.082	-0.366	0.0013%
chr5_1130812_A_C	chr5:1130812	-0.111	-0.121	-0.366	<0.001%
chr5_1140611_G_C	chr5:1140611	-0.231	-0.121	-0.078	0.019%
chr5_1161197_G_A	chr5:1161197	0.119	0.203	0.366	0.033%
chr5_1130773_G_A	chr5:1130773	0.099	0.042	0.359	<0.001%
chr5_1140509_C_T	chr5:1140509	0.219	0.166	0.288	<0.001%
chr5_1140583_G_T	chr5:1140583	0.216	0.125	0.144	0.0020%
chr5_1141991_C_T	chr5:1141991	0.090	0.098	0.343	0.416%
chr5_1130450_G_T	chr5:1130450	0.103	0.021	0.340	<0.001%
chr5_1130514_G_A	chr5:1130514	0.090	0.120	0.340	0.0020%
chr5_1131021_G_A	chr5:1131021	0.016	0.097	0.340	0.0013%
chr5_1138625_C_T	chr5:1138625	-0.207	-0.288	-0.340	0.0013%
chr5_1138688_G_A	chr5:1138688	-0.144	-0.177	-0.340	<0.001%
chr5_1130811_G_T	chr5:1130811	-0.171	-0.163	-0.333	<0.001%
chr5_1155342_C_A	chr5:1155342	0.028	0.080	0.332	0.0013%
chr5_1140401_G_A	chr5:1140401	-0.206	-0.109	0.013	0.0053%
chr5_1140615_T_A	chr5:1140615	-0.206	-0.109	-0.157	<0.001%
chr5_1161382_T_C	chr5:1161382	-0.066	-0.252	-0.327	0.0020%
chr5_1161302_C_A	chr5:1161302	0.204	-0.059	0.105	<0.001%
chr5_1130676_C_G	chr5:1130676	0.019	0.031	0.320	<0.001%
chr5_1161196_C_T	chr5:1161196	0.045	0.211	0.320	0.0066%
chr5_1131022_G_A	chr5:1131022	0.031	0.078	0.314	<0.001%
chr5_1138671_C_T	chr5:1138671	-0.198	-0.240	-0.261	2.24%
chr5_1140457_G_T	chr5:1140457	0.198	0.061	0.052	<0.001%
chr5_1155221_C_T	chr5:1155221	0.044	0.062	0.314	<0.001%
chr5_1138717_G_A	chr5:1138717	-0.195	-0.254	-0.294	0.0013%
chr5_1161199_A_G	chr5:1161199	0.086	0.171	0.307	<0.001%
chr5_1161370_C_A	chr5:1161370	-0.074	-0.104	-0.307	<0.001%
chr5_1156232_C_T	chr5:1156232	0.039	0.069	0.304	<0.001%
chr5_1140441_G_T	chr5:1140441	0.120	-0.048	0.301	<0.001%
chr5_1140579_T_C	chr5:1140579	-0.190	-0.096	-0.131	0.0013%
chr5_1161371_C_G	chr5:1161371	0.109	0.062	0.301	0.0046%
chr5_1130821_T_C	chr5:1130821	-0.134	-0.112	-0.294	<0.001%
chr5_1138625_C_A	chr5:1138625	-0.186	-0.267	-0.261	6.05%
chr5_1140555_A_G	chr5:1140555	-0.184	-0.102	0.052	<0.001%
chr5_1140374_T_A	chr5:1140374	0.181	0.054	0.170	<0.001%
chr5_1161253_G_A	chr5:1161253	-0.034	-0.069	-0.288	0.0013%
chr5_1142091_C_T	chr5:1142091	-0.095	-0.127	-0.285	<0.001%
chr5_1155220_C_T	chr5:1155220	0.050	0.052	0.284	0.0020%
chr5_1142087_A_G	chr5:1142087	-0.113	-0.134	-0.283	0.034%
chr5_1130769_G_A	chr5:1130769	0.082	0.126	0.281	<0.001%
chr5_1138605_G_C	chr5:1138605	-0.118	-0.121	-0.281	<0.001%
chr5_1155600_C_T	chr5:1155600	0.049	0.060	0.281	0.0020%
chr5_1138609_G_A	chr5:1138609	0.175	0.185	0.176	0.0033%
chr5_1138603_T_G	chr5:1138603	-0.164	-0.181	-0.275	0.0013%
chr5_1140526_C_T	chr5:1140526	-0.173	-0.077	0.039	0.054%
chr5_1155914_C_G	chr5:1155914	-0.088	-0.046	-0.273	<0.001%
chr5_1140365_G_A	chr5:1140365	-0.171	-0.010	0.131	0.0059%
chr5_1130799_C_T	chr5:1130799	-0.124	-0.101	-0.268	0.0059%
chr5_1138757_G_A	chr5:1138757	0.127	0.131	0.268	<0.001%
chr5_1155928_C_T	chr5:1155928	-0.107	-0.070	-0.267	0.0014%
chr5_1155350_C_G	chr5:1155350	0.073	0.134	0.263	<0.001%
chr5_1138238_G_A	chr5:1138238	-0.070	-0.137	-0.261	0.0020%
chr5_1130848_G_A	chr5:1130848	-0.163	-0.105	-0.137	0.0020%
chr5_1130853_A_C	chr5:1130853	0.058	0.016	0.255	<0.001%
chr5_1130861_G_A	chr5:1130861	0.056	0.002	-0.255	0.0033%
chr5_1130861_G_T	chr5:1130861	-0.091	-0.029	-0.255	0.163%
chr5_1161332_A_G	chr5:1161332	-0.159	-0.296	0.131	<0.001%
chr5_1130884_G_A	chr5:1130884	0.004	0.018	0.248	<0.001%
chr5_1138720_T_C	chr5:1138720	-0.138	-0.188	-0.248	0.453%
chr5_1161315_G_A	chr5:1161315	0.006	-0.042	-0.248	0.022%
chr5_1142060_G_A	chr5:1142060	-0.093	-0.137	-0.244	<0.001%
chr5_1130616_A_C	chr5:1130616	0.153	0.102	0.222	<0.001%
chr5_1130729_G_A	chr5:1130729	-0.153	-0.019	-0.229	0.0013%
chr5_1130912_A_C	chr5:1130912	-0.035	-0.080	-0.242	0.0013%
chr5_1142080_G_A	chr5:1142080	0.105	0.103	0.242	0.0013%
chr5_1155954_A_T	chr5:1155954	-0.060	-0.056	-0.240	0.0012%
chr5_1130621_G_A	chr5:1130621	0.056	0.048	0.235	0.0020%
chr5_1140406_T_C	chr5:1140406	-0.136	0.019	-0.235	<0.001%
chr5_1140581_A_C	chr5:1140581	0.085	0.042	0.235	0.0020%
chr5_1140619_C_T	chr5:1140619	-0.148	-0.099	-0.118	0.0020%
chr5_1142079_G_C	chr5:1142079	0.094	0.085	0.233	<0.001%
chr5_1155993_G_C	chr5:1155993	0.037	0.047	0.231	0.0040%
chr5_1161317_C_T	chr5:1161317	0.101	-0.003	-0.229	<0.001%
chr5_1140534_C_T	chr5:1140534	-0.142	-0.093	-0.144	0.0013%
chr5_1155908_G_A	chr5:1155908	0.064	0.070	0.224	<0.001%
chr5_1140393_C_T	chr5:1140393	0.082	-0.026	0.222	0.0026%
chr5_1140551_C_T	chr5:1140551	-0.122	-0.016	-0.222	0.0020%
chr5_1161314_C_T	chr5:1161314	0.128	0.129	-0.222	0.0079%
chr5_1140387_T_C	chr5:1140387	0.138	0.045	0.078	58.6%
chr5_1155580_C_T	chr5:1155580	0.081	0.075	0.218	0.0020%
chr5_1138262_T_G	chr5:1138262	0.046	0.149	-0.216	0.012%
chr5_1138481_C_A	chr5:1138481	0.094	0.137	0.216	<0.001%
chr5_1138631_C_G	chr5:1138631	-0.131	-0.264	-0.216	0.0013%
chr5_1140460_G_A	chr5:1140460	-0.136	-0.035	-0.183	<0.001%
chr5_1155965_G_A	chr5:1155965	0.047	0.025	0.214	<0.001%
chr5_1156054_C_G	chr5:1156054	-0.089	-0.115	-0.214	0.0013%
chr5_1156017_G_A	chr5:1156017	0.013	0.050	0.213	0.0033%
chr5_1140367_G_A	chr5:1140367	-0.134	-0.019	-0.118	<0.001%
chr5_1155988_C_T	chr5:1155988	-0.066	-0.055	-0.212	<0.001%
chr5_1138559_C_T	chr5:1138559	0.133	0.144	0.124	0.283%
chr5_1155926_G_A	chr5:1155926	0.058	0.056	0.210	<0.001%
chr5_1130472_G_C	chr5:1130472	-0.006	-0.037	-0.209	<0.001%
chr5_1138617_C_G	chr5:1138617	-0.042	0.011	0.209	<0.001%
chr5_1140391_C_T	chr5:1140391	0.132	0.010	0.092	0.0039%
chr5_1142097_C_G	chr5:1142097	0.085	0.077	0.206	<0.001%
chr5_1140362_C_A	chr5:1140362	-0.130	-0.054	0.078	<0.001%
chr5_1155554_G_A	chr5:1155554	0.023	0.037	0.206	<0.001%
chr5_1155556_G_A	chr5:1155556	0.029	0.023	0.206	0.0020%
chr5_1155955_G_T	chr5:1155955	-0.095	-0.053	-0.206	0.0011%
chr5_1142062_C_T	chr5:1142062	-0.099	-0.102	-0.205	0.0099%
chr5_1130430_A_T	chr5:1130430	0.129	-0.009	-0.157	<0.001%
chr5_1155522_G_A	chr5:1155522	0.012	0.036	0.204	0.0033%
chr5_1130363_C_A	chr5:1130363	0.029	0.026	0.203	0.0013%
chr5_1138196_G_A	chr5:1138196	0.032	0.077	0.203	0.019%
chr5_1138198_A_G	chr5:1138198	-0.006	-0.083	0.203	0.0034%
chr5_1138370_C_G	chr5:1138370	-0.063	-0.051	-0.203	<0.001%
chr5_1138608_C_T	chr5:1138608	0.103	0.077	0.203	0.013%
chr5_1161352_A_G	chr5:1161352	-0.060	-0.078	-0.203	0.0013%
chr5_1155623_G_T	chr5:1155623	0.008	0.031	0.202	0.0013%
chr5_1156002_G_A	chr5:1156002	0.008	0.041	0.202	0.367%
chr5_1142072_G_A	chr5:1142072	-0.093	-0.088	-0.200	0.0013%
chr5_1130803_A_C	chr5:1130803	-0.126	-0.109	-0.026	0.0079%
chr5_1140614_T_C	chr5:1140614	-0.126	-0.056	-0.052	<0.001%
chr5_1155992_C_G	chr5:1155992	0.015	0.020	0.197	<0.001%
chr5_1130621_G_T	chr5:1130621	0.060	0.042	0.196	0.020%
chr5_1130956_A_G	chr5:1130956	-0.029	-0.042	-0.196	<0.001%
chr5_1138697_G_A	chr5:1138697	0.124	0.152	0.163	0.0013%
chr5_1140441_G_A	chr5:1140441	0.118	-0.054	0.196	0.0046%
chr5_1155577_A_C	chr5:1155577	0.122	0.055	0.058	<0.001%
chr5_1138792_G_A	chr5:1138792	0.122	0.059	0.157	<0.001%
chr5_1161350_G_A	chr5:1161350	-0.122	-0.069	-0.026	0.0020%
chr5_1155286_C_G	chr5:1155286	-0.049	-0.074	-0.191	<0.001%
chr5_1155561_C_A	chr5:1155561	0.079	0.073	0.191	0.0013%
chr5_1155631_C_A	chr5:1155631	0.039	0.037	0.191	1.46%
chr5_1155910_A_C	chr5:1155910	-0.038	-0.036	-0.191	0.0087%
chr5_1142135_C_A	chr5:1142135	0.111	0.105	0.190	<0.001%
chr5_1155787_G_A	chr5:1155787	0.120	0.072	0.181	0.0013%
chr5_1130775_C_T	chr5:1130775	-0.035	-0.086	-0.190	14.5%
chr5_1138779_G_A	chr5:1138779	-0.079	-0.104	-0.190	<0.001%
chr5_1155605_C_T	chr5:1155605	0.036	0.032	0.189	<0.001%
chr5_1155549_G_A	chr5:1155549	0.023	0.038	0.188	<0.001%
chr5_1156022_G_A	chr5:1156022	-0.002	0.039	0.186	0.0033%
chr5_1155921_G_A	chr5:1155921	0.059	0.048	0.185	<0.001%
chr5_1138551_C_G	chr5:1138551	0.037	0.058	0.183	0.0026%
chr5_1140397_C_T	chr5:1140397	0.109	0.038	0.183	0.0026%
chr5_1161251_G_A	chr5:1161251	0.066	0.067	0.183	0.0026%
chr5_1138715_C_A	chr5:1138715	0.113	0.075	0.170	<0.001%
chr5_1140562_A_C	chr5:1140562	-0.113	-0.042	-0.052	<0.001%
chr5_1140620_G_A	chr5:1140620	-0.113	-0.027	-0.065	0.227%
chr5_1156026_G_A	chr5:1156026	0.039	0.044	0.179	<0.001%
chr5_1155579_C_A	chr5:1155579	0.068	0.045	0.179	0.0013%
chr5_1155965_G_C	chr5:1155965	0.064	0.028	0.177	0.0020%
chr5_1138225_G_A	chr5:1138225	-0.063	-0.091	-0.176	0.0046%

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.