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SLC9A3
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near SLC9A3
chr5:370,455..624,449, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr5_373841_C_G | chr5:373841 | -0.324 | -0.052 | -1.000 | <0.001% |
| chr5_373897_G_A | chr5:373897 | 0.469 | 0.142 | 1.000 | <0.001% |
| chr5_373832_G_A | chr5:373832 | -0.235 | 0.004 | -1.000 | <0.001% |
| chr5_373644_A_G | chr5:373644 | -0.095 | -0.103 | -1.000 | — |
| chr5_373642_A_G | chr5:373642 | -0.096 | -0.101 | -1.000 | — |
| chr5_373895_T_C | chr5:373895 | -0.169 | -0.078 | -1.000 | 0.0013% |
| chr5_373899_G_C | chr5:373899 | -0.226 | -0.071 | -0.959 | 0.0053% |
| chr5_373817_G_C | chr5:373817 | 0.254 | 0.062 | 0.866 | 0.0013% |
| chr5_373905_G_T | chr5:373905 | 0.249 | 0.061 | 0.838 | 0.0013% |
| chr5_373860_G_A | chr5:373860 | 0.143 | 0.062 | 0.817 | <0.001% |
| chr5_373835_G_C | chr5:373835 | -0.215 | -0.035 | -0.776 | 0.0040% |
| chr5_373597_A_G | chr5:373597 | -0.071 | -0.060 | -0.696 | — |
| chr5_373647_T_G | chr5:373647 | -0.126 | -0.045 | -0.690 | — |
| chr5_373896_C_A | chr5:373896 | -0.256 | -0.064 | -0.729 | 0.0040% |
| chr5_373870_C_G | chr5:373870 | -0.160 | -0.007 | -0.683 | 0.0013% |
| chr5_373877_G_C | chr5:373877 | 0.180 | 0.042 | 0.569 | 0.0040% |
| chr5_373638_C_G | chr5:373638 | -0.055 | -0.038 | -0.528 | — |
| chr5_373885_G_C | chr5:373885 | -0.165 | -0.022 | -0.562 | <0.001% |
| chr5_373589_C_G | chr5:373589 | -0.085 | -0.062 | -0.522 | — |
| chr5_373639_T_G | chr5:373639 | -0.053 | -0.054 | -0.510 | — |
| chr5_373892_C_T | chr5:373892 | 0.155 | 0.018 | 0.516 | 0.0013% |
| chr5_373795_C_T | chr5:373795 | 0.034 | 0.045 | 0.497 | <0.001% |
| chr5_373872_C_T | chr5:373872 | 0.092 | 0.055 | 0.487 | <0.001% |
| chr5_373866_T_G | chr5:373866 | -0.107 | -0.028 | -0.474 | 0.0027% |
| chr5_373629_A_G | chr5:373629 | -0.044 | -0.040 | -0.440 | — |
| chr5_373779_C_T | chr5:373779 | 0.094 | 0.041 | 0.458 | <0.001% |
| chr5_373711_G_T | chr5:373711 | 0.039 | 0.027 | 0.444 | <0.001% |
| chr5_373783_C_T | chr5:373783 | 0.059 | 0.019 | 0.438 | <0.001% |
| chr5_373626_A_G | chr5:373626 | -0.037 | -0.033 | -0.403 | — |
| chr5_373884_G_T | chr5:373884 | -0.104 | 0.003 | -0.428 | <0.001% |
| chr5_373828_T_G | chr5:373828 | -0.079 | -0.011 | -0.412 | <0.001% |
| chr5_373727_C_G | chr5:373727 | -0.097 | -0.037 | -0.405 | 0.0013% |
| chr5_373881_C_T | chr5:373881 | 0.042 | 0.040 | 0.402 | 0.0013% |
| chr5_373847_C_T | chr5:373847 | -0.239 | -0.038 | -0.389 | <0.001% |
| chr5_373764_C_T | chr5:373764 | 0.018 | 0.021 | 0.366 | 0.0013% |
| chr5_373713_G_A | chr5:373713 | 0.027 | 0.019 | 0.363 | <0.001% |
| chr5_373809_C_T | chr5:373809 | 0.041 | 0.016 | 0.359 | 0.271% |
| chr5_373594_C_G | chr5:373594 | -0.016 | -0.024 | -0.327 | — |
| chr5_373765_G_T | chr5:373765 | 0.014 | 0.022 | 0.350 | <0.001% |
| chr5_373895_T_A | chr5:373895 | -0.072 | -0.027 | -0.350 | 0.0013% |
| chr5_373602_G_C | chr5:373602 | 0.075 | 0.030 | 0.308 | 0.0033% |
| chr5_373707_G_A | chr5:373707 | 0.025 | 0.026 | 0.310 | 0.0013% |
| chr5_373801_G_T | chr5:373801 | 0.018 | 0.014 | 0.310 | <0.001% |
| chr5_373772_C_T | chr5:373772 | 0.015 | 0.021 | 0.307 | 0.018% |
| chr5_373533_C_A | chr5:373533 | -0.038 | -0.007 | -0.284 | — |
| chr5_373757_C_T | chr5:373757 | -0.020 | 0.017 | 0.294 | <0.001% |
| chr5_373636_G_C | chr5:373636 | 0.035 | 0.035 | 0.272 | — |
| chr5_373766_C_T | chr5:373766 | 0.021 | 0.020 | 0.291 | 0.0033% |
| chr5_373749_C_T | chr5:373749 | 0.028 | 0.019 | 0.288 | 0.0086% |
| chr5_373633_T_G | chr5:373633 | -0.020 | -0.021 | -0.266 | <0.001% |
| chr5_373837_C_T | chr5:373837 | 0.034 | 0.029 | 0.284 | <0.001% |
| chr5_373602_G_A | chr5:373602 | 0.062 | 0.012 | 0.263 | — |
| chr5_373740_C_A | chr5:373740 | 0.042 | 0.024 | 0.281 | 0.017% |
| chr5_373600_G_C | chr5:373600 | 0.084 | 0.021 | 0.260 | — |
| chr5_373773_G_A | chr5:373773 | 0.010 | 0.025 | 0.278 | <0.001% |
| chr5_373800_C_T | chr5:373800 | 0.032 | -0.018 | 0.278 | <0.001% |
| chr5_373835_G_A | chr5:373835 | 0.015 | 0.019 | 0.275 | 0.0020% |
| chr5_373636_G_A | chr5:373636 | 0.029 | 0.028 | 0.253 | — |
| chr5_373721_G_T | chr5:373721 | 0.026 | 0.016 | 0.271 | <0.001% |
| chr5_373764_C_G | chr5:373764 | 0.030 | 0.017 | 0.265 | <0.001% |
| chr5_373852_G_A | chr5:373852 | -0.142 | -0.008 | -0.265 | 0.0020% |
| chr5_373636_G_T | chr5:373636 | 0.026 | 0.029 | 0.244 | — |
| chr5_373549_C_T | chr5:373549 | -0.036 | -0.005 | -0.241 | — |
| chr5_373566_C_A | chr5:373566 | -0.027 | -0.003 | -0.229 | — |
| chr5_373856_G_T | chr5:373856 | -0.058 | -0.021 | 0.245 | 0.0040% |
| chr5_373566_C_T | chr5:373566 | -0.044 | -0.008 | -0.217 | — |
| chr5_373760_G_A | chr5:373760 | 0.012 | 0.016 | 0.232 | 3.68% |
| chr5_373634_G_C | chr5:373634 | 0.037 | 0.027 | 0.214 | — |
| chr5_373768_C_A | chr5:373768 | -0.009 | 0.014 | 0.229 | <0.001% |
| chr5_373617_T_G | chr5:373617 | 0.022 | 0.014 | 0.211 | — |
| chr5_373715_G_A | chr5:373715 | 0.002 | 0.017 | 0.225 | <0.001% |
| chr5_373617_T_C | chr5:373617 | 0.012 | 0.008 | 0.205 | — |
| chr5_373778_C_G | chr5:373778 | 0.136 | 0.021 | 0.219 | 0.0066% |
| chr5_373631_A_G | chr5:373631 | -0.018 | -0.019 | -0.202 | — |
| chr5_373808_G_A | chr5:373808 | 0.033 | 0.029 | 0.216 | 0.0033% |
| chr5_373741_G_A | chr5:373741 | 0.012 | 0.015 | 0.212 | 0.0033% |
| chr5_373767_C_T | chr5:373767 | 0.039 | 0.014 | 0.212 | 0.0020% |
| chr5_373604_G_A | chr5:373604 | 0.040 | 0.010 | 0.192 | — |
| chr5_373635_G_C | chr5:373635 | 0.030 | 0.027 | 0.192 | — |
| chr5_373660_C_T | chr5:373660 | -0.037 | -0.013 | -0.206 | 0.0046% |
| chr5_373564_C_A | chr5:373564 | -0.008 | -0.000 | -0.189 | — |
| chr5_373635_G_T | chr5:373635 | 0.015 | 0.017 | 0.189 | — |
| chr5_373760_G_T | chr5:373760 | 0.002 | 0.013 | 0.203 | 0.0026% |
| chr5_373457_C_G | chr5:373457 | 0.074 | 0.076 | 0.186 | — |
| chr5_373353_A_T | chr5:373353 | -0.006 | 0.027 | 0.183 | — |
| chr5_373533_C_T | chr5:373533 | -0.029 | -0.012 | -0.183 | — |
| chr5_373570_C_A | chr5:373570 | -0.030 | -0.012 | -0.183 | — |
| chr5_373565_A_T | chr5:373565 | -0.041 | -0.009 | -0.180 | — |
| chr5_373638_C_A | chr5:373638 | -0.044 | -0.013 | -0.180 | — |
| chr5_373749_C_A | chr5:373749 | 0.010 | 0.014 | 0.193 | 0.0040% |
| chr5_373601_G_C | chr5:373601 | 0.059 | 0.016 | 0.177 | — |
| chr5_373753_T_G | chr5:373753 | -0.030 | -0.003 | -0.190 | <0.001% |
| chr5_373459_C_G | chr5:373459 | 0.047 | -0.000 | 0.174 | — |
| chr5_373659_G_A | chr5:373659 | 0.030 | 0.019 | 0.186 | <0.001% |
| chr5_373392_G_C | chr5:373392 | 0.025 | 0.029 | 0.171 | — |
| chr5_373568_C_G | chr5:373568 | -0.049 | -0.001 | -0.171 | — |
| chr5_373607_T_G | chr5:373607 | 0.015 | 0.020 | 0.171 | — |
| chr5_373632_C_G | chr5:373632 | -0.036 | -0.016 | -0.171 | — |
| chr5_373816_C_T | chr5:373816 | -0.046 | 0.006 | 0.183 | 0.0066% |
| chr5_373562_T_G | chr5:373562 | 0.024 | 0.007 | 0.168 | — |
| chr5_373424_G_T | chr5:373424 | -0.010 | -0.004 | -0.165 | — |
| chr5_373518_A_T | chr5:373518 | 0.037 | 0.003 | 0.165 | — |
| chr5_373616_A_C | chr5:373616 | 0.008 | 0.014 | 0.165 | — |
| chr5_373745_G_A | chr5:373745 | -0.016 | 0.015 | 0.176 | 0.0053% |
| chr5_373560_C_G | chr5:373560 | 0.037 | 0.015 | 0.162 | — |
| chr5_373759_C_T | chr5:373759 | 0.032 | 0.007 | 0.173 | <0.001% |
| chr5_373566_C_G | chr5:373566 | -0.022 | 0.001 | -0.159 | — |
| chr5_373567_T_C | chr5:373567 | -0.049 | -0.009 | -0.159 | — |
| chr5_373600_G_T | chr5:373600 | 0.028 | -0.004 | 0.159 | — |
| chr5_373646_G_T | chr5:373646 | 0.006 | 0.013 | 0.159 | — |
| chr5_373807_C_T | chr5:373807 | -0.107 | -0.007 | -0.131 | 0.0013% |
| chr5_373555_C_A | chr5:373555 | -0.025 | -0.014 | -0.156 | — |
| chr5_373616_A_G | chr5:373616 | 0.029 | 0.007 | 0.156 | — |
| chr5_373377_G_C | chr5:373377 | -0.002 | -0.005 | 0.153 | — |
| chr5_373506_A_C | chr5:373506 | -0.026 | 0.009 | -0.153 | — |
| chr5_373656_G_T | chr5:373656 | -0.102 | 0.004 | -0.072 | <0.001% |
| chr5_373564_C_T | chr5:373564 | 0.015 | 0.024 | -0.150 | <0.001% |
| chr5_373609_T_C | chr5:373609 | 0.008 | 0.010 | 0.150 | — |
| chr5_373791_C_T | chr5:373791 | 0.040 | 0.012 | 0.160 | 0.016% |
| chr5_373458_C_A | chr5:373458 | 0.029 | 0.020 | 0.147 | <0.001% |
| chr5_373561_A_T | chr5:373561 | 0.025 | 0.006 | 0.147 | — |
| chr5_373590_T_G | chr5:373590 | -0.021 | -0.017 | -0.147 | <0.001% |
| chr5_373561_A_G | chr5:373561 | 0.015 | 0.011 | 0.144 | — |
| chr5_373637_G_A | chr5:373637 | 0.025 | 0.016 | 0.144 | <0.001% |
| chr5_373385_C_G | chr5:373385 | -0.015 | -0.027 | -0.140 | — |
| chr5_373556_T_C | chr5:373556 | 0.043 | 0.021 | 0.140 | — |
| chr5_373570_C_T | chr5:373570 | -0.033 | -0.013 | -0.140 | — |
| chr5_373577_C_G | chr5:373577 | -0.009 | -0.008 | -0.140 | — |
| chr5_373600_G_A | chr5:373600 | 0.038 | -0.005 | 0.140 | — |
| chr5_373458_C_G | chr5:373458 | 0.077 | 0.046 | 0.116 | — |
| chr5_373505_C_G | chr5:373505 | 0.028 | 0.030 | 0.137 | — |
| chr5_373601_G_A | chr5:373601 | 0.019 | -0.005 | 0.137 | — |
| chr5_373602_G_T | chr5:373602 | 0.021 | -0.004 | 0.137 | — |
| chr5_373615_C_G | chr5:373615 | 0.026 | 0.020 | 0.137 | — |
| chr5_373617_T_A | chr5:373617 | 0.023 | 0.010 | 0.137 | — |
| chr5_373634_G_A | chr5:373634 | 0.008 | 0.007 | 0.137 | — |
| chr5_373635_G_A | chr5:373635 | -0.008 | 0.016 | 0.137 | — |
| chr5_373391_G_T | chr5:373391 | 0.000 | -0.003 | -0.134 | — |
| chr5_373526_G_A | chr5:373526 | -0.008 | -0.005 | -0.134 | 0.0013% |
| chr5_373567_T_A | chr5:373567 | -0.023 | -0.008 | -0.134 | — |
| chr5_373645_G_C | chr5:373645 | -0.003 | 0.010 | 0.134 | — |
| chr5_373526_G_T | chr5:373526 | -0.009 | -0.010 | -0.131 | — |
| chr5_373550_C_T | chr5:373550 | -0.019 | -0.007 | -0.131 | 0.333% |
| chr5_373599_G_C | chr5:373599 | 0.008 | -0.003 | 0.131 | 0.081% |
| chr5_373643_G_C | chr5:373643 | -0.004 | 0.006 | 0.131 | — |
| chr5_373499_A_T | chr5:373499 | 0.010 | 0.010 | 0.128 | — |
| chr5_373568_C_A | chr5:373568 | -0.038 | -0.007 | -0.128 | — |
| chr5_373569_A_T | chr5:373569 | -0.032 | -0.017 | -0.128 | — |
| chr5_373576_G_T | chr5:373576 | -0.006 | 0.014 | -0.128 | — |
| chr5_373603_G_A | chr5:373603 | 0.044 | 0.009 | 0.128 | — |
| chr5_373643_G_A | chr5:373643 | 0.009 | 0.009 | 0.128 | — |
| chr5_373897_G_T | chr5:373897 | 0.024 | 0.022 | 0.137 | <0.001% |
| chr5_373623_A_G | chr5:373623 | -0.015 | -0.012 | -0.125 | — |
| chr5_373493_A_C | chr5:373493 | 0.010 | 0.000 | -0.122 | — |
| chr5_373499_A_C | chr5:373499 | 0.009 | 0.011 | 0.122 | — |
| chr5_373562_T_C | chr5:373562 | -0.016 | -0.006 | 0.122 | — |
| chr5_373637_G_C | chr5:373637 | -0.002 | 0.006 | 0.122 | — |
| chr5_373640_G_C | chr5:373640 | 0.001 | 0.011 | 0.122 | — |
| chr5_373646_G_A | chr5:373646 | -0.001 | 0.011 | 0.122 | — |
| chr5_373788_T_G | chr5:373788 | 0.022 | 0.003 | -0.131 | <0.001% |
| chr5_373513_T_C | chr5:373513 | -0.022 | -0.011 | -0.119 | — |
| chr5_373550_C_A | chr5:373550 | -0.030 | -0.011 | -0.119 | — |
| chr5_373571_C_A | chr5:373571 | 0.003 | -0.003 | -0.119 | — |
| chr5_373592_G_A | chr5:373592 | 0.023 | 0.023 | 0.119 | — |
| chr5_373607_T_A | chr5:373607 | 0.009 | 0.016 | 0.119 | — |
| chr5_373609_T_A | chr5:373609 | 0.017 | 0.006 | 0.119 | — |
| chr5_373615_C_A | chr5:373615 | 0.032 | 0.018 | 0.119 | — |
| chr5_373622_G_A | chr5:373622 | -0.023 | -0.014 | -0.119 | — |
| chr5_373772_C_A | chr5:373772 | -0.054 | -0.001 | 0.127 | <0.001% |
| chr5_373882_C_T | chr5:373882 | 0.044 | 0.053 | 0.127 | 0.0027% |
| chr5_373480_C_T | chr5:373480 | 0.006 | -0.001 | -0.116 | — |
| chr5_373586_T_G | chr5:373586 | 0.008 | -0.014 | -0.116 | — |
| chr5_373616_A_T | chr5:373616 | 0.032 | 0.016 | 0.116 | — |
| chr5_373507_C_T | chr5:373507 | -0.001 | 0.005 | -0.113 | — |
| chr5_373516_C_A | chr5:373516 | -0.015 | -0.009 | -0.113 | — |
| chr5_373606_C_G | chr5:373606 | 0.017 | 0.012 | 0.113 | <0.001% |
| chr5_373618_C_G | chr5:373618 | 0.017 | 0.001 | 0.113 | — |
| chr5_373850_G_A | chr5:373850 | 0.022 | 0.023 | 0.121 | 0.021% |
| chr5_373647_T_C | chr5:373647 | -0.062 | -0.004 | -0.101 | — |
| chr5_373348_T_A | chr5:373348 | 0.001 | 0.002 | 0.110 | — |
| chr5_373393_C_G | chr5:373393 | -0.028 | -0.021 | -0.110 | — |
| chr5_373460_C_G | chr5:373460 | 0.040 | -0.006 | 0.110 | — |
| chr5_373500_T_C | chr5:373500 | 0.013 | 0.011 | 0.110 | <0.001% |
| chr5_373546_G_T | chr5:373546 | -0.026 | -0.007 | -0.110 | — |
| chr5_373609_T_G | chr5:373609 | 0.010 | 0.012 | 0.110 | — |
| chr5_373611_T_G | chr5:373611 | 0.009 | 0.004 | 0.110 | — |
| chr5_373459_C_A | chr5:373459 | 0.025 | -0.005 | 0.107 | — |
| chr5_373461_T_G | chr5:373461 | 0.036 | 0.003 | 0.107 | — |
| chr5_373504_C_G | chr5:373504 | 0.021 | 0.006 | 0.107 | — |
| chr5_373552_T_C | chr5:373552 | 0.037 | 0.016 | 0.107 | — |
| chr5_373555_C_T | chr5:373555 | -0.004 | -0.005 | -0.107 | — |
| chr5_373561_A_C | chr5:373561 | 0.015 | 0.007 | 0.107 | — |
| chr5_373579_A_T | chr5:373579 | -0.030 | 0.001 | -0.107 | — |
| chr5_373581_T_G | chr5:373581 | 0.003 | 0.003 | -0.107 | — |
| chr5_373588_G_A | chr5:373588 | 0.017 | 0.014 | 0.107 | — |
| chr5_373611_T_C | chr5:373611 | -0.013 | 0.006 | 0.107 | — |
| chr5_373626_A_C | chr5:373626 | 0.018 | 0.012 | 0.107 | — |
| chr5_373627_G_C | chr5:373627 | 0.006 | 0.008 | 0.107 | — |
| chr5_373647_T_A | chr5:373647 | -0.060 | -0.003 | -0.104 | — |
| chr5_373353_A_C | chr5:373353 | -0.005 | -0.001 | 0.104 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.