Home / Gene

SPEN

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near SPEN

chr1:15,747,706..16,040,456, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr1_15759117_G_A	chr1:15759117	0.101	0.270	1.000	—
chr1_15759168_C_G	chr1:15759168	0.159	0.169	1.000	—
chr1_15759126_C_G	chr1:15759126	0.247	0.280	0.924	—
chr1_15759123_G_A	chr1:15759123	0.075	0.199	0.906	<0.001%
chr1_15759102_C_G	chr1:15759102	0.225	0.219	0.784	<0.001%
chr1_15759211_C_T	chr1:15759211	0.225	0.108	0.772	—
chr1_15759180_A_C	chr1:15759180	0.111	0.210	0.749	<0.001%
chr1_15759172_A_G	chr1:15759172	-0.133	-0.127	-0.702	—
chr1_15759206_G_C	chr1:15759206	0.374	0.190	0.690	—
chr1_15759154_T_C	chr1:15759154	-0.121	-0.105	-0.637	—
chr1_15759191_A_T	chr1:15759191	0.162	0.171	0.632	—
chr1_15759095_G_A	chr1:15759095	0.158	0.095	0.626	—
chr1_15759203_G_A	chr1:15759203	-0.135	-0.134	-0.620	—
chr1_15759150_A_C	chr1:15759150	-0.055	-0.097	-0.579	—
chr1_15759177_C_A	chr1:15759177	0.230	0.242	0.561	—
chr1_15759066_G_T	chr1:15759066	0.070	0.096	0.532	—
chr1_15759150_A_G	chr1:15759150	-0.071	-0.101	-0.532	—
chr1_15759221_C_T	chr1:15759221	0.082	0.029	0.503	—
chr1_15758993_T_G	chr1:15758993	-0.048	-0.029	-0.497	—
chr1_15759148_G_A	chr1:15759148	-0.046	-0.056	-0.485	—
chr1_15759149_G_C	chr1:15759149	-0.050	-0.074	-0.485	—
chr1_15759118_A_C	chr1:15759118	-0.005	-0.076	-0.474	—
chr1_15759153_C_T	chr1:15759153	0.022	0.105	0.474	—
chr1_15759151_A_T	chr1:15759151	-0.055	-0.103	-0.468	—
chr1_15759171_G_A	chr1:15759171	0.108	0.149	0.468	—
chr1_15759221_C_A	chr1:15759221	0.064	0.042	0.456	—
chr1_15759221_C_G	chr1:15759221	0.062	-0.020	0.456	—
chr1_15758980_A_C	chr1:15758980	0.023	-0.067	-0.452	—
chr1_15758957_G_A	chr1:15758957	0.017	0.069	0.444	—
chr1_15759195_A_C	chr1:15759195	0.050	0.145	0.444	—
chr1_15758959_C_T	chr1:15758959	0.039	0.069	0.437	—
chr1_15759160_A_C	chr1:15759160	0.046	0.079	0.433	—
chr1_15758945_G_A	chr1:15758945	0.031	0.037	0.428	—
chr1_15758960_C_T	chr1:15758960	0.032	0.077	0.423	—
chr1_15759148_G_C	chr1:15759148	-0.030	-0.052	-0.415	0.0013%
chr1_15759148_G_T	chr1:15759148	-0.036	-0.038	-0.404	—
chr1_15759222_C_T	chr1:15759222	0.068	0.067	0.398	—
chr1_15758947_C_A	chr1:15758947	-0.002	0.040	0.395	0.0013%
chr1_15759144_G_C	chr1:15759144	-0.045	-0.040	-0.392	—
chr1_15759174_T_C	chr1:15759174	-0.070	-0.090	-0.386	—
chr1_15759223_C_T	chr1:15759223	0.066	0.038	0.386	—
chr1_15759155_C_T	chr1:15759155	0.063	0.085	0.380	<0.001%
chr1_15759151_A_C	chr1:15759151	-0.023	-0.054	-0.374	—
chr1_15759151_A_G	chr1:15759151	-0.020	-0.087	-0.374	—
chr1_15759174_T_A	chr1:15759174	-0.081	-0.101	-0.374	—
chr1_15758959_C_A	chr1:15758959	0.030	0.058	0.368	—
chr1_15759102_C_A	chr1:15759102	0.114	0.129	0.368	—
chr1_15759150_A_T	chr1:15759150	-0.046	-0.070	-0.368	—
chr1_15758958_A_G	chr1:15758958	0.011	-0.032	-0.367	—
chr1_15759002_C_G	chr1:15759002	-0.048	-0.060	-0.367	—
chr1_15759202_G_A	chr1:15759202	0.136	0.077	0.363	—
chr1_15759222_C_A	chr1:15759222	0.043	0.011	0.363	—
chr1_15759076_A_G	chr1:15759076	-0.034	-0.059	-0.351	—
chr1_15758949_C_T	chr1:15758949	0.008	0.041	0.346	—
chr1_15758951_A_G	chr1:15758951	-0.005	-0.033	-0.346	—
chr1_15759155_C_G	chr1:15759155	0.093	0.049	0.345	—
chr1_15758987_T_G	chr1:15758987	-0.003	-0.030	-0.344	—
chr1_15758951_A_C	chr1:15758951	-0.005	-0.028	-0.339	—
chr1_15759120_C_G	chr1:15759120	0.061	0.103	0.339	—
chr1_15759213_G_C	chr1:15759213	-0.090	-0.072	-0.339	—
chr1_15759225_G_A	chr1:15759225	-0.088	-0.064	-0.339	<0.001%
chr1_15759234_C_A	chr1:15759234	0.046	0.030	0.339	—
chr1_15758953_C_T	chr1:15758953	0.006	0.039	0.333	<0.001%
chr1_15759106_T_C	chr1:15759106	-0.019	-0.064	-0.333	—
chr1_15759147_C_G	chr1:15759147	-0.075	-0.052	-0.333	—
chr1_15758967_G_A	chr1:15758967	-0.004	0.035	0.329	—
chr1_15759212_A_G	chr1:15759212	-0.037	-0.054	-0.327	—
chr1_15758958_A_C	chr1:15758958	0.002	-0.024	-0.323	—
chr1_15758950_C_T	chr1:15758950	0.008	0.032	0.320	—
chr1_15758963_C_T	chr1:15758963	0.016	0.043	0.320	—
chr1_15758963_C_A	chr1:15758963	0.004	0.038	0.317	—
chr1_15759064_A_G	chr1:15759064	-0.036	-0.049	-0.316	—
chr1_15759097_A_C	chr1:15759097	0.002	-0.043	-0.316	—
chr1_15759147_C_T	chr1:15759147	-0.030	-0.033	-0.316	<0.001%
chr1_15759149_G_T	chr1:15759149	-0.033	-0.047	-0.316	—
chr1_15759156_C_A	chr1:15759156	0.068	0.068	0.316	—
chr1_15759164_A_T	chr1:15759164	0.007	0.033	0.316	—
chr1_15759204_C_G	chr1:15759204	-0.077	-0.073	-0.316	—
chr1_15759214_C_G	chr1:15759214	-0.053	-0.058	-0.316	—
chr1_15759000_T_G	chr1:15759000	-0.043	-0.032	-0.313	—
chr1_15759057_A_C	chr1:15759057	-0.035	-0.041	-0.313	—
chr1_15758973_C_T	chr1:15758973	0.005	0.037	0.311	0.031%
chr1_15758998_G_A	chr1:15758998	0.017	0.034	0.310	—
chr1_15759024_C_A	chr1:15759024	-0.006	0.009	0.310	—
chr1_15759146_G_T	chr1:15759146	-0.050	-0.007	-0.310	—
chr1_15758946_T_C	chr1:15758946	-0.009	-0.037	-0.307	—
chr1_15758948_G_T	chr1:15758948	-0.002	0.047	0.307	<0.001%
chr1_15759049_A_C	chr1:15759049	-0.028	-0.045	-0.307	—
chr1_15758954_C_A	chr1:15758954	0.014	0.031	0.306	—
chr1_15758960_C_A	chr1:15758960	0.023	0.053	0.306	—
chr1_15759091_C_T	chr1:15759091	0.055	0.064	0.304	—
chr1_15759146_G_C	chr1:15759146	0.022	0.062	0.304	—
chr1_15759188_C_G	chr1:15759188	-0.070	-0.063	-0.304	—
chr1_15759220_C_T	chr1:15759220	0.031	0.013	0.304	—
chr1_15758966_C_A	chr1:15758966	-0.008	0.048	0.301	—
chr1_15758971_C_A	chr1:15758971	-0.003	0.040	0.300	—
chr1_15759189_G_A	chr1:15759189	-0.053	-0.049	-0.298	—
chr1_15758952_G_T	chr1:15758952	-0.007	0.029	0.295	—
chr1_15758971_C_T	chr1:15758971	-0.001	0.036	0.295	—
chr1_15758949_C_A	chr1:15758949	0.000	0.037	0.292	—
chr1_15759068_C_G	chr1:15759068	-0.052	-0.036	-0.292	—
chr1_15759093_G_T	chr1:15759093	-0.085	-0.046	-0.292	—
chr1_15758962_C_T	chr1:15758962	0.000	0.020	0.291	—
chr1_15758993_T_C	chr1:15758993	0.001	-0.035	-0.288	—
chr1_15758947_C_T	chr1:15758947	-0.003	0.027	0.287	—
chr1_15759134_C_G	chr1:15759134	0.038	0.042	0.287	—
chr1_15758955_G_T	chr1:15758955	0.008	0.032	0.282	—
chr1_15758977_T_C	chr1:15758977	0.002	-0.029	-0.282	—
chr1_15759106_T_G	chr1:15759106	-0.011	-0.071	-0.281	—
chr1_15759132_A_T	chr1:15759132	-0.065	-0.049	-0.281	—
chr1_15759220_C_A	chr1:15759220	0.057	0.031	0.281	—
chr1_15759222_C_G	chr1:15759222	0.075	-0.003	0.281	—
chr1_15758967_G_T	chr1:15758967	0.002	0.032	0.279	<0.001%
chr1_15758956_G_A	chr1:15758956	0.002	0.030	0.278	—
chr1_15758968_C_A	chr1:15758968	-0.011	0.030	0.278	—
chr1_15758948_G_A	chr1:15758948	-0.004	0.035	0.276	—
chr1_15758955_G_A	chr1:15758955	0.002	0.028	0.275	—
chr1_15758988_G_A	chr1:15758988	0.011	0.024	0.275	—
chr1_15759103_G_A	chr1:15759103	0.043	0.076	0.275	—
chr1_15759124_A_C	chr1:15759124	0.003	-0.047	-0.275	—
chr1_15759134_C_A	chr1:15759134	0.007	0.048	0.275	0.0046%
chr1_15759145_G_C	chr1:15759145	-0.016	-0.023	-0.275	—
chr1_15758962_C_A	chr1:15758962	0.023	0.035	0.273	—
chr1_15758969_G_A	chr1:15758969	0.026	0.032	0.270	—
chr1_15758969_G_T	chr1:15758969	0.010	0.037	0.270	—
chr1_15758953_C_A	chr1:15758953	-0.017	0.030	0.269	—
chr1_15758961_C_T	chr1:15758961	0.014	0.047	0.269	—
chr1_15759097_A_G	chr1:15759097	-0.036	-0.030	-0.269	—
chr1_15759229_C_A	chr1:15759229	0.004	0.058	0.269	—
chr1_15758975_C_A	chr1:15758975	0.004	0.026	0.265	—
chr1_15758945_G_T	chr1:15758945	0.002	0.026	0.263	—
chr1_15759143_A_G	chr1:15759143	-0.028	-0.052	-0.263	—
chr1_15758978_G_A	chr1:15758978	0.020	0.012	0.260	—
chr1_15758978_G_C	chr1:15758978	-0.052	-0.030	-0.259	<0.001%
chr1_15759129_G_A	chr1:15759129	0.036	0.045	0.257	—
chr1_15759130_G_T	chr1:15759130	0.036	0.103	0.257	<0.001%
chr1_15759157_C_A	chr1:15759157	0.043	0.048	0.257	—
chr1_15759157_C_T	chr1:15759157	0.060	0.068	0.257	—
chr1_15759175_C_T	chr1:15759175	0.003	0.056	0.257	0.0099%
chr1_15759178_G_T	chr1:15759178	0.041	0.054	0.257	—
chr1_15759187_T_C	chr1:15759187	-0.063	-0.034	-0.257	—
chr1_15759223_C_A	chr1:15759223	0.028	0.013	0.257	—
chr1_15758968_C_T	chr1:15758968	-0.010	0.029	0.256	—
chr1_15758954_C_T	chr1:15758954	0.006	0.032	0.253	<0.001%
chr1_15758980_A_G	chr1:15758980	-0.012	0.003	-0.253	—
chr1_15759005_T_C	chr1:15759005	-0.014	-0.039	-0.250	—
chr1_15758982_G_A	chr1:15758982	0.012	0.029	0.249	—
chr1_15759005_T_G	chr1:15759005	-0.027	-0.030	-0.249	—
chr1_15758957_G_T	chr1:15758957	0.019	0.042	0.246	—
chr1_15759092_G_A	chr1:15759092	0.014	0.033	0.246	—
chr1_15759146_G_A	chr1:15759146	-0.041	-0.004	-0.246	—
chr1_15759165_A_T	chr1:15759165	0.031	0.053	0.246	—
chr1_15759206_G_A	chr1:15759206	0.118	0.071	0.246	—
chr1_15758966_C_T	chr1:15758966	0.002	0.044	0.240	—
chr1_15759104_A_C	chr1:15759104	-0.012	-0.054	-0.240	—
chr1_15759110_A_G	chr1:15759110	0.010	-0.022	-0.240	—
chr1_15759120_C_A	chr1:15759120	0.022	0.042	0.240	—
chr1_15759133_C_T	chr1:15759133	0.038	0.043	0.240	—
chr1_15759149_G_A	chr1:15759149	-0.051	-0.027	-0.240	—
chr1_15758984_G_T	chr1:15758984	-0.005	0.031	0.237	<0.001%
chr1_15759092_G_T	chr1:15759092	0.000	0.003	0.234	—
chr1_15759172_A_C	chr1:15759172	-0.023	-0.047	-0.234	—
chr1_15759230_C_A	chr1:15759230	0.012	0.037	0.234	—
chr1_15758946_T_G	chr1:15758946	-0.003	-0.032	-0.232	—
chr1_15758997_G_A	chr1:15758997	0.029	0.017	0.232	—
chr1_15758961_C_A	chr1:15758961	0.007	0.019	0.231	—
chr1_15759000_T_C	chr1:15759000	-0.011	-0.032	-0.231	—
chr1_15758984_G_A	chr1:15758984	-0.002	0.036	0.228	—
chr1_15759103_G_T	chr1:15759103	0.017	0.011	0.228	—
chr1_15759107_C_G	chr1:15759107	0.084	0.063	0.228	—
chr1_15759003_G_T	chr1:15759003	0.020	0.037	0.225	—
chr1_15759013_C_A	chr1:15759013	0.063	0.074	0.225	—
chr1_15758972_G_T	chr1:15758972	0.004	0.035	0.224	—
chr1_15759088_G_T	chr1:15759088	-0.014	-0.028	-0.222	—
chr1_15759104_A_G	chr1:15759104	-0.024	-0.040	-0.222	—
chr1_15759108_C_A	chr1:15759108	0.000	0.041	0.222	—
chr1_15759167_G_C	chr1:15759167	-0.023	-0.042	-0.222	—
chr1_15759174_T_G	chr1:15759174	-0.018	-0.068	-0.222	—
chr1_15759194_A_C	chr1:15759194	0.002	0.065	0.222	—
chr1_15759220_C_G	chr1:15759220	0.039	0.009	0.222	—
chr1_15759228_G_T	chr1:15759228	0.002	0.033	0.222	—
chr1_15759231_G_C	chr1:15759231	-0.104	-0.031	-0.222	—
chr1_15759231_G_T	chr1:15759231	-0.012	0.025	0.222	<0.001%
chr1_15758981_G_T	chr1:15758981	0.018	0.026	0.219	—
chr1_15758956_G_T	chr1:15758956	0.014	0.037	0.218	—
chr1_15759006_C_A	chr1:15759006	0.123	0.054	0.012	—
chr1_15759155_C_A	chr1:15759155	0.041	0.038	0.216	—
chr1_15759159_C_T	chr1:15759159	0.025	0.052	0.216	—
chr1_15758972_G_A	chr1:15758972	0.008	0.031	0.215	<0.001%
chr1_15758989_C_T	chr1:15758989	0.002	0.034	0.213	—
chr1_15758982_G_T	chr1:15758982	-0.003	0.026	0.211	0.0079%
chr1_15759116_G_C	chr1:15759116	-0.001	-0.030	-0.211	—
chr1_15759134_C_T	chr1:15759134	0.018	0.040	0.211	<0.001%
chr1_15759208_G_A	chr1:15759208	0.056	0.048	0.211	—
chr1_15759224_G_C	chr1:15759224	-0.055	-0.053	-0.211	—
chr1_15758989_C_A	chr1:15758989	-0.004	0.030	0.208	—
chr1_15758996_G_A	chr1:15758996	0.034	0.003	0.205	—
chr1_15759093_G_C	chr1:15759093	0.027	0.029	0.205	—
chr1_15758977_T_G	chr1:15758977	0.012	-0.020	-0.203	—
chr1_15758981_G_A	chr1:15758981	0.013	0.027	0.203	—

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.