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TCEA3

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near TCEA3

chr1:23,280,908..23,524,748, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr1_23456462_A_T	chr1:23456462	0.260	0.068	0.275	—
chr1_23456500_T_G	chr1:23456500	0.121	0.053	0.339	—
chr1_23456462_A_C	chr1:23456462	0.187	0.078	0.257	—
chr1_23478851_C_G	chr1:23478851	-0.173	-0.091	-0.058	—
chr1_23456504_T_C	chr1:23456504	0.166	0.141	0.240	—
chr1_23456506_T_A	chr1:23456506	0.129	0.013	0.263	—
chr1_23456455_T_G	chr1:23456455	-0.144	-0.058	-0.135	—
chr1_23456457_A_C	chr1:23456457	-0.099	-0.043	-0.251	—
chr1_23456471_G_C	chr1:23456471	-0.099	-0.048	-0.246	—
chr1_23456501_G_C	chr1:23456501	0.045	0.083	0.234	—
chr1_23456486_G_A	chr1:23456486	-0.089	-0.028	-0.228	—
chr1_23456486_G_T	chr1:23456486	-0.127	-0.060	-0.216	0.0013%
chr1_23456460_C_T	chr1:23456460	-0.089	-0.025	-0.222	—
chr1_23456470_T_A	chr1:23456470	-0.124	-0.030	-0.140	—
chr1_23456459_T_G	chr1:23456459	-0.123	-0.035	-0.123	—
chr1_23456466_T_A	chr1:23456466	-0.123	-0.058	-0.135	—
chr1_23478877_T_C	chr1:23478877	0.121	0.060	0.129	—
chr1_23456516_C_A	chr1:23456516	-0.056	-0.025	-0.211	—
chr1_23456455_T_A	chr1:23456455	-0.116	-0.043	-0.164	—
chr1_23456456_G_T	chr1:23456456	-0.116	-0.003	-0.123	—
chr1_23456498_T_C	chr1:23456498	0.091	0.088	0.205	—
chr1_23456456_G_C	chr1:23456456	-0.114	-0.015	-0.164	—
chr1_23456459_T_C	chr1:23456459	-0.114	-0.055	-0.111	—
chr1_23456462_A_G	chr1:23456462	0.114	-0.023	0.129	—
chr1_23478877_T_A	chr1:23478877	0.114	0.144	0.181	—
chr1_23456454_G_T	chr1:23456454	-0.113	-0.015	-0.146	—
chr1_23456456_G_A	chr1:23456456	-0.113	-0.023	-0.181	—
chr1_23456457_A_T	chr1:23456457	-0.113	-0.023	-0.181	—
chr1_23456470_T_C	chr1:23456470	-0.113	-0.038	-0.117	—
chr1_23456491_G_T	chr1:23456491	-0.051	-0.010	-0.199	—
chr1_23456514_G_T	chr1:23456514	-0.063	-0.033	-0.199	—
chr1_23456516_C_T	chr1:23456516	-0.040	-0.015	-0.199	—
chr1_23456441_C_A	chr1:23456441	0.111	0.065	0.105	—
chr1_23456460_C_G	chr1:23456460	-0.103	-0.025	-0.193	—
chr1_23456471_G_A	chr1:23456471	-0.060	-0.020	-0.193	—
chr1_23456471_G_T	chr1:23456471	-0.065	-0.015	-0.193	—
chr1_23456484_G_C	chr1:23456484	-0.058	-0.028	-0.193	—
chr1_23456485_T_G	chr1:23456485	-0.089	-0.048	-0.193	—
chr1_23456486_G_C	chr1:23456486	-0.109	-0.058	-0.181	—
chr1_23456497_G_C	chr1:23456497	0.031	0.023	0.193	—
chr1_23456515_G_A	chr1:23456515	-0.018	-0.003	-0.193	—
chr1_23456515_G_T	chr1:23456515	-0.018	-0.010	-0.193	—
chr1_23478872_C_G	chr1:23478872	-0.106	-0.156	-0.158	—
chr1_23456488_C_A	chr1:23456488	-0.104	-0.030	-0.187	—
chr1_23456453_A_G	chr1:23456453	0.104	0.018	0.088	—
chr1_23456459_T_A	chr1:23456459	-0.103	-0.023	-0.123	—
chr1_23456484_G_A	chr1:23456484	-0.055	-0.018	-0.181	0.0013%
chr1_23456501_G_T	chr1:23456501	0.061	0.068	0.181	—
chr1_23456514_G_C	chr1:23456514	-0.058	-0.043	-0.181	—
chr1_23456488_C_T	chr1:23456488	-0.101	-0.030	-0.152	—
chr1_23456483_T_G	chr1:23456483	-0.028	-0.030	-0.175	—
chr1_23456491_G_A	chr1:23456491	-0.035	0.000	-0.175	<0.001%
chr1_23456446_T_G	chr1:23456446	0.096	0.025	0.035	—
chr1_23456488_C_G	chr1:23456488	-0.096	-0.045	-0.158	—
chr1_23456509_C_T	chr1:23456509	-0.010	0.005	-0.170	—
chr1_23456458_G_A	chr1:23456458	-0.094	-0.005	-0.094	—
chr1_23456466_T_C	chr1:23456466	-0.094	-0.121	0.018	—
chr1_23456472_G_C	chr1:23456472	-0.094	-0.010	-0.082	—
chr1_23456483_T_C	chr1:23456483	0.048	0.025	0.164	—
chr1_23456508_G_A	chr1:23456508	-0.078	0.030	-0.164	—
chr1_23456461_A_G	chr1:23456461	-0.091	-0.043	-0.088	—
chr1_23456470_T_G	chr1:23456470	-0.091	-0.010	-0.158	—
chr1_23478879_G_T	chr1:23478879	0.090	0.071	0.076	—
chr1_23456464_G_A	chr1:23456464	-0.058	-0.018	-0.158	—
chr1_23456467_A_C	chr1:23456467	-0.086	-0.020	-0.158	—
chr1_23456473_C_G	chr1:23456473	-0.089	-0.028	-0.129	—
chr1_23456484_G_T	chr1:23456484	-0.051	-0.025	-0.158	—
chr1_23456502_A_T	chr1:23456502	0.078	0.050	0.158	—
chr1_23456508_G_T	chr1:23456508	-0.013	-0.005	-0.158	—
chr1_23478881_C_T	chr1:23478881	-0.052	-0.128	-0.158	—
chr1_23478878_G_C	chr1:23478878	0.089	0.035	0.082	—
chr1_23456469_G_C	chr1:23456469	-0.088	0.038	-0.099	—
chr1_23478837_T_G	chr1:23478837	-0.087	-0.063	-0.047	—
chr1_23456455_T_C	chr1:23456455	-0.086	-0.025	-0.047	—
chr1_23456466_T_G	chr1:23456466	-0.086	-0.045	-0.012	—
chr1_23456472_G_A	chr1:23456472	-0.045	-0.005	-0.152	—
chr1_23456480_G_T	chr1:23456480	-0.068	-0.035	-0.146	—
chr1_23456482_G_T	chr1:23456482	-0.083	0.005	-0.094	—
chr1_23456489_A_T	chr1:23456489	-0.028	0.018	-0.146	—
chr1_23456469_G_A	chr1:23456469	-0.081	0.008	-0.135	—
chr1_23456441_C_G	chr1:23456441	0.079	0.030	0.076	—
chr1_23456457_A_G	chr1:23456457	-0.079	0.010	-0.123	—
chr1_23456502_A_C	chr1:23456502	0.025	0.025	0.140	—
chr1_23456514_G_A	chr1:23456514	-0.031	-0.020	-0.140	—
chr1_23456515_G_C	chr1:23456515	-0.007	-0.013	-0.140	—
chr1_23456516_C_G	chr1:23456516	-0.035	-0.020	-0.140	—
chr1_23478872_C_T	chr1:23478872	-0.068	-0.091	-0.140	<0.001%
chr1_23456473_C_A	chr1:23456473	-0.075	-0.010	-0.135	—
chr1_23456487_C_A	chr1:23456487	-0.076	-0.020	-0.135	—
chr1_23456490_G_T	chr1:23456490	-0.026	0.018	-0.135	—
chr1_23456502_A_G	chr1:23456502	0.025	0.010	0.135	—
chr1_23456510_C_A	chr1:23456510	-0.017	0.000	-0.135	—
chr1_23456444_C_G	chr1:23456444	-0.075	-0.005	-0.012	—
chr1_23456554_C_A	chr1:23456554	0.075	0.030	0.018	—
chr1_23456460_C_A	chr1:23456460	-0.071	-0.003	-0.129	—
chr1_23456467_A_T	chr1:23456467	-0.073	-0.030	-0.123	—
chr1_23456509_C_A	chr1:23456509	0.010	0.010	-0.129	—
chr1_23456512_C_A	chr1:23456512	-0.025	-0.013	-0.129	—
chr1_23456513_T_A	chr1:23456513	0.031	0.005	0.129	—
chr1_23478839_T_G	chr1:23478839	0.043	0.076	0.129	—
chr1_23478863_G_T	chr1:23478863	-0.063	-0.131	-0.129	—
chr1_23456469_G_T	chr1:23456469	-0.071	-0.003	-0.082	—
chr1_23478873_A_G	chr1:23478873	-0.070	-0.045	-0.041	—
chr1_23456468_C_T	chr1:23456468	-0.031	0.038	-0.123	—
chr1_23456473_C_T	chr1:23456473	-0.022	0.000	-0.123	—
chr1_23456487_C_T	chr1:23456487	-0.050	-0.018	-0.123	—
chr1_23456491_G_C	chr1:23456491	-0.020	-0.008	-0.123	—
chr1_23456492_C_A	chr1:23456492	0.002	0.005	-0.123	—
chr1_23456492_C_T	chr1:23456492	-0.003	0.018	-0.123	—
chr1_23456499_T_A	chr1:23456499	0.070	0.058	0.094	—
chr1_23478842_A_C	chr1:23478842	0.068	0.073	0.123	—
chr1_23478872_C_A	chr1:23478872	-0.068	-0.086	-0.117	—
chr1_23456500_T_A	chr1:23456500	0.068	0.033	0.082	—
chr1_23456450_T_G	chr1:23456450	0.018	0.050	0.117	<0.001%
chr1_23456461_A_T	chr1:23456461	-0.051	-0.020	-0.117	—
chr1_23456474_A_C	chr1:23456474	-0.066	-0.025	-0.012	—
chr1_23456474_A_T	chr1:23456474	-0.066	-0.013	-0.058	—
chr1_23456481_G_A	chr1:23456481	-0.046	-0.035	-0.117	—
chr1_23456493_C_T	chr1:23456493	-0.007	0.018	-0.117	—
chr1_23456499_T_G	chr1:23456499	0.028	0.030	0.117	—
chr1_23478842_A_G	chr1:23478842	0.002	0.033	0.117	—
chr1_23478877_T_G	chr1:23478877	0.064	0.033	0.117	0.0020%
chr1_23478878_G_T	chr1:23478878	0.066	0.013	0.006	—
chr1_23478851_C_A	chr1:23478851	-0.065	-0.045	-0.058	—
chr1_23456454_G_C	chr1:23456454	-0.065	-0.003	-0.076	—
chr1_23478882_A_C	chr1:23478882	0.064	0.091	0.099	—
chr1_23456451_G_A	chr1:23456451	0.013	-0.005	-0.111	—
chr1_23456519_T_C	chr1:23456519	0.017	0.028	0.111	0.0013%
chr1_23456443_G_T	chr1:23456443	-0.061	-0.028	-0.076	—
chr1_23456444_C_A	chr1:23456444	-0.061	-0.013	-0.029	—
chr1_23478851_C_T	chr1:23478851	-0.061	-0.013	-0.070	—
chr1_23478868_A_G	chr1:23478868	-0.060	-0.053	-0.018	—
chr1_23456464_G_T	chr1:23456464	-0.043	-0.005	-0.105	—
chr1_23456474_A_G	chr1:23456474	-0.060	-0.025	-0.058	—
chr1_23456476_G_A	chr1:23456476	-0.026	-0.003	-0.105	<0.001%
chr1_23456496_G_C	chr1:23456496	0.028	0.018	0.105	—
chr1_23456498_T_A	chr1:23456498	0.017	0.015	0.105	<0.001%
chr1_23456510_C_G	chr1:23456510	-0.028	-0.010	-0.105	—
chr1_23456527_G_T	chr1:23456527	-0.022	-0.008	-0.105	—
chr1_23478839_T_C	chr1:23478839	0.001	0.023	0.105	—
chr1_23478857_C_A	chr1:23478857	-0.058	0.000	-0.041	—
chr1_23456445_G_C	chr1:23456445	-0.058	-0.018	-0.012	—
chr1_23456445_G_T	chr1:23456445	-0.058	-0.010	-0.029	—
chr1_23456447_A_G	chr1:23456447	0.036	0.010	0.099	—
chr1_23456490_G_A	chr1:23456490	0.002	0.005	-0.099	—
chr1_23478875_G_T	chr1:23478875	0.056	-0.025	-0.029	—
chr1_23478876_A_C	chr1:23478876	0.044	0.048	0.099	—
chr1_23478868_A_C	chr1:23478868	-0.055	-0.073	-0.035	—
chr1_23478878_G_A	chr1:23478878	0.055	0.033	0.023	—
chr1_23478881_C_A	chr1:23478881	0.054	-0.065	-0.012	—
chr1_23456439_T_G	chr1:23456439	-0.053	-0.030	0.000	—
chr1_23456448_A_T	chr1:23456448	-0.018	-0.010	-0.094	—
chr1_23456465_G_A	chr1:23456465	-0.025	-0.015	-0.094	<0.001%
chr1_23456477_A_C	chr1:23456477	0.005	0.000	0.094	—
chr1_23456485_T_A	chr1:23456485	-0.038	-0.025	-0.094	—
chr1_23456487_C_G	chr1:23456487	-0.053	-0.018	0.000	—
chr1_23456492_C_G	chr1:23456492	-0.002	0.000	-0.094	—
chr1_23456505_C_G	chr1:23456505	0.053	0.040	0.094	—
chr1_23456510_C_T	chr1:23456510	-0.003	0.005	-0.094	—
chr1_23456511_T_A	chr1:23456511	-0.012	-0.003	-0.094	—
chr1_23456550_A_T	chr1:23456550	0.053	0.003	0.029	—
chr1_23478852_T_G	chr1:23478852	-0.015	0.050	0.094	—
chr1_23478862_A_C	chr1:23478862	-0.014	-0.035	0.094	—
chr1_23478870_A_G	chr1:23478870	0.045	0.033	0.094	—
chr1_23478884_A_C	chr1:23478884	-0.053	-0.040	-0.029	—
chr1_23478864_G_C	chr1:23478864	0.052	0.015	0.000	—
chr1_23478831_T_G	chr1:23478831	-0.051	-0.033	-0.023	—
chr1_23478866_A_C	chr1:23478866	-0.051	-0.086	-0.041	—
chr1_23478861_G_T	chr1:23478861	0.050	-0.030	-0.047	—
chr1_23478882_A_T	chr1:23478882	0.050	0.043	0.023	—
chr1_23478887_A_G	chr1:23478887	0.033	-0.154	0.088	—
chr1_23456539_C_A	chr1:23456539	-0.036	-0.008	-0.088	—
chr1_23456546_G_T	chr1:23456546	-0.036	-0.015	-0.088	—
chr1_23478849_A_C	chr1:23478849	0.022	0.018	0.088	—
chr1_23478862_A_G	chr1:23478862	-0.022	0.025	-0.088	—
chr1_23478859_G_T	chr1:23478859	-0.049	-0.020	-0.047	—
chr1_23456451_G_T	chr1:23456451	-0.048	-0.018	-0.064	—
chr1_23456507_T_A	chr1:23456507	0.048	0.015	0.006	—
chr1_23478842_A_T	chr1:23478842	0.048	0.076	0.076	—
chr1_23456436_C_A	chr1:23456436	0.015	0.030	-0.082	—
chr1_23456436_C_G	chr1:23456436	0.022	0.028	-0.082	—
chr1_23456438_A_C	chr1:23456438	0.046	0.020	-0.018	—
chr1_23456443_G_A	chr1:23456443	-0.041	0.000	-0.082	—
chr1_23456449_A_C	chr1:23456449	0.046	0.013	0.029	—
chr1_23456464_G_C	chr1:23456464	-0.030	-0.023	-0.082	—
chr1_23456481_G_T	chr1:23456481	-0.028	-0.025	-0.082	—
chr1_23456489_A_G	chr1:23456489	-0.040	-0.018	-0.082	—
chr1_23456505_C_A	chr1:23456505	0.046	0.050	0.018	—
chr1_23456512_C_T	chr1:23456512	-0.015	-0.008	-0.082	—
chr1_23456520_A_T	chr1:23456520	-0.012	-0.025	-0.082	—
chr1_23456541_A_C	chr1:23456541	0.017	0.000	0.082	—
chr1_23456544_C_T	chr1:23456544	-0.033	-0.020	-0.082	—
chr1_23456551_C_A	chr1:23456551	-0.002	0.010	-0.082	—
chr1_23456569_G_T	chr1:23456569	-0.031	-0.010	-0.082	—
chr1_23478839_T_A	chr1:23478839	0.016	0.043	0.082	—
chr1_23478854_A_T	chr1:23478854	-0.031	-0.028	-0.082	—
chr1_23478885_G_T	chr1:23478885	-0.031	-0.003	-0.082	—
chr1_23456437_A_C	chr1:23456437	-0.045	-0.013	-0.018	—
chr1_23456444_C_T	chr1:23456444	-0.045	-0.003	0.018	0.022%
chr1_23478860_G_C	chr1:23478860	0.045	-0.003	0.064	—

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.