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TCN2
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near TCN2
chr22:30,507,082..30,727,271, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr22_30562653_G_T | chr22:30562653 | 1.000 | 1.000 | 1.000 | — |
| chr22_30562668_G_C | chr22:30562668 | 1.000 | 0.919 | 1.000 | — |
| chr22_30562644_G_C | chr22:30562644 | 1.000 | 0.608 | 0.647 | — |
| chr22_30562653_G_C | chr22:30562653 | 0.960 | 0.925 | 1.000 | 0.0072% |
| chr22_30562618_A_T | chr22:30562618 | -0.790 | -1.000 | -1.000 | — |
| chr22_30562618_A_C | chr22:30562618 | -0.802 | -1.000 | -1.000 | — |
| chr22_30562620_T_C | chr22:30562620 | -0.811 | -0.987 | -1.000 | — |
| chr22_30562618_A_G | chr22:30562618 | -0.794 | -1.000 | -1.000 | — |
| chr22_30562610_T_A | chr22:30562610 | 0.895 | 0.899 | 0.977 | — |
| chr22_30562741_G_A | chr22:30562741 | 0.894 | 1.000 | 1.000 | — |
| chr22_30562620_T_A | chr22:30562620 | -0.782 | -0.940 | -1.000 | — |
| chr22_30562616_T_A | chr22:30562616 | -0.725 | -0.884 | -1.000 | — |
| chr22_30562622_A_T | chr22:30562622 | -0.695 | -0.826 | -1.000 | — |
| chr22_30562616_T_G | chr22:30562616 | -0.732 | -0.890 | -1.000 | — |
| chr22_30562740_T_A | chr22:30562740 | 0.845 | 1.000 | 0.910 | — |
| chr22_30562663_T_C | chr22:30562663 | 0.844 | 0.966 | 1.000 | — |
| chr22_30562610_T_C | chr22:30562610 | -0.813 | -0.999 | -1.000 | — |
| chr22_30562620_T_G | chr22:30562620 | -0.737 | -0.878 | -1.000 | — |
| chr22_30562622_A_C | chr22:30562622 | -0.654 | -0.739 | -1.000 | — |
| chr22_30562606_A_C | chr22:30562606 | 0.787 | 0.958 | 1.000 | — |
| chr22_30562622_A_G | chr22:30562622 | -0.659 | -0.781 | -1.000 | — |
| chr22_30562671_T_C | chr22:30562671 | 0.768 | 0.948 | 0.721 | — |
| chr22_30562616_T_C | chr22:30562616 | -0.679 | -0.816 | -1.000 | — |
| chr22_30562621_C_T | chr22:30562621 | -0.597 | -0.709 | -1.000 | — |
| chr22_30562592_C_A | chr22:30562592 | 0.731 | 0.831 | 0.831 | 0.0013% |
| chr22_30562617_G_A | chr22:30562617 | -0.578 | -0.713 | -1.000 | 0.0046% |
| chr22_30562621_C_G | chr22:30562621 | -0.583 | -0.687 | -1.000 | — |
| chr22_30562632_T_C | chr22:30562632 | -0.628 | -0.774 | -1.000 | — |
| chr22_30562634_C_A | chr22:30562634 | 0.719 | 0.805 | 1.000 | — |
| chr22_30562617_G_C | chr22:30562617 | -0.580 | -0.712 | -1.000 | — |
| chr22_30562600_C_G | chr22:30562600 | 0.712 | 0.717 | 0.885 | — |
| chr22_30562664_G_C | chr22:30562664 | 0.658 | 0.701 | 0.611 | — |
| chr22_30562615_G_T | chr22:30562615 | -0.570 | -0.675 | -1.000 | — |
| chr22_30562617_G_T | chr22:30562617 | -0.535 | -0.635 | -1.000 | — |
| chr22_30562604_C_T | chr22:30562604 | -0.569 | -0.630 | -1.000 | — |
| chr22_30562634_C_G | chr22:30562634 | 0.617 | 0.696 | 0.867 | — |
| chr22_30562677_T_A | chr22:30562677 | -0.576 | -0.706 | -1.000 | — |
| chr22_30562677_T_G | chr22:30562677 | -0.529 | -0.664 | -1.000 | — |
| chr22_30562659_G_T | chr22:30562659 | 0.565 | 0.621 | 0.629 | — |
| chr22_30562635_C_G | chr22:30562635 | 0.561 | 0.665 | 0.776 | — |
| chr22_30562671_T_G | chr22:30562671 | 0.545 | 0.564 | 0.617 | — |
| chr22_30562677_T_C | chr22:30562677 | -0.522 | -0.639 | -0.965 | — |
| chr22_30562590_T_C | chr22:30562590 | 0.472 | 0.590 | 0.959 | 0.0020% |
| chr22_30562645_C_T | chr22:30562645 | -0.407 | -0.587 | -0.953 | — |
| chr22_30562661_G_A | chr22:30562661 | 0.533 | 0.688 | 0.739 | — |
| chr22_30562619_C_A | chr22:30562619 | -0.487 | -0.595 | -0.940 | — |
| chr22_30562619_C_T | chr22:30562619 | -0.482 | -0.597 | -0.916 | — |
| chr22_30562667_T_A | chr22:30562667 | 0.508 | 0.647 | 0.696 | — |
| chr22_30562737_A_T | chr22:30562737 | 0.485 | 0.579 | 0.904 | — |
| chr22_30562596_G_T | chr22:30562596 | -0.506 | -0.595 | -0.867 | — |
| chr22_30562691_G_A | chr22:30562691 | 0.505 | 0.725 | 0.635 | — |
| chr22_30562601_A_T | chr22:30562601 | 0.501 | 0.468 | 0.715 | — |
| chr22_30562621_C_A | chr22:30562621 | -0.429 | -0.460 | -0.892 | — |
| chr22_30562596_G_C | chr22:30562596 | -0.497 | -0.558 | -0.794 | — |
| chr22_30562623_T_A | chr22:30562623 | -0.493 | -0.553 | -0.861 | — |
| chr22_30562588_C_G | chr22:30562588 | -0.491 | -0.605 | -0.837 | — |
| chr22_30562633_C_G | chr22:30562633 | 0.484 | 0.577 | 0.782 | — |
| chr22_30562674_C_A | chr22:30562674 | 0.471 | 0.506 | 0.580 | — |
| chr22_30562668_G_A | chr22:30562668 | 0.471 | 0.535 | 0.776 | — |
| chr22_30562714_C_A | chr22:30562714 | 0.467 | 0.704 | 0.537 | — |
| chr22_30635347_C_A | chr22:30635347 | -0.451 | -0.071 | -0.831 | — |
| chr22_30562684_C_G | chr22:30562684 | 0.464 | 0.603 | 0.470 | — |
| chr22_30562630_G_C | chr22:30562630 | 0.444 | 0.655 | 0.544 | — |
| chr22_30562682_C_A | chr22:30562682 | -0.320 | -0.521 | -0.788 | — |
| chr22_30562656_T_G | chr22:30562656 | -0.406 | -0.474 | -0.782 | — |
| chr22_30562591_G_C | chr22:30562591 | 0.424 | 0.439 | 0.556 | — |
| chr22_30562589_A_C | chr22:30562589 | 0.423 | 0.499 | 0.739 | — |
| chr22_30562643_G_C | chr22:30562643 | -0.372 | -0.442 | -0.733 | — |
| chr22_30562611_A_G | chr22:30562611 | 0.409 | 0.431 | 0.635 | — |
| chr22_30562686_G_T | chr22:30562686 | -0.286 | -0.423 | -0.727 | — |
| chr22_30562735_G_C | chr22:30562735 | 0.405 | 0.413 | 0.617 | — |
| chr22_30562615_G_C | chr22:30562615 | -0.382 | -0.455 | -0.684 | <0.001% |
| chr22_30562603_G_C | chr22:30562603 | 0.378 | 0.444 | 0.470 | — |
| chr22_30562648_C_G | chr22:30562648 | 0.340 | 0.439 | 0.660 | — |
| chr22_30562687_G_A | chr22:30562687 | -0.298 | -0.439 | -0.656 | — |
| chr22_30562686_G_A | chr22:30562686 | -0.300 | -0.418 | -0.650 | — |
| chr22_30562610_T_G | chr22:30562610 | 0.364 | 0.418 | 0.415 | — |
| chr22_30562639_G_A | chr22:30562639 | -0.363 | -0.439 | -0.598 | — |
| chr22_30562667_T_G | chr22:30562667 | -0.335 | -0.434 | -0.641 | — |
| chr22_30562683_T_G | chr22:30562683 | 0.356 | 0.400 | 0.434 | — |
| chr22_30562623_T_G | chr22:30562623 | -0.355 | -0.366 | -0.550 | — |
| chr22_30562664_G_T | chr22:30562664 | 0.294 | 0.400 | 0.629 | <0.001% |
| chr22_30562647_C_G | chr22:30562647 | 0.350 | 0.351 | 0.617 | — |
| chr22_30562687_G_T | chr22:30562687 | -0.273 | -0.390 | -0.623 | — |
| chr22_30562636_C_G | chr22:30562636 | 0.346 | 0.325 | 0.464 | — |
| chr22_30562598_T_G | chr22:30562598 | 0.235 | 0.265 | 0.617 | — |
| chr22_30562680_C_T | chr22:30562680 | -0.304 | -0.444 | -0.614 | — |
| chr22_30562660_T_G | chr22:30562660 | -0.337 | -0.405 | -0.470 | — |
| chr22_30562602_G_C | chr22:30562602 | 0.335 | 0.514 | 0.434 | — |
| chr22_30562634_C_T | chr22:30562634 | 0.331 | 0.377 | 0.446 | — |
| chr22_30562654_A_G | chr22:30562654 | 0.330 | 0.174 | 0.263 | — |
| chr22_30562751_G_A | chr22:30562751 | 0.324 | 0.421 | 0.351 | — |
| chr22_30562684_C_A | chr22:30562684 | 0.323 | 0.413 | 0.256 | — |
| chr22_30562646_A_G | chr22:30562646 | 0.323 | 0.296 | 0.574 | — |
| chr22_30562611_A_C | chr22:30562611 | 0.322 | 0.335 | 0.476 | — |
| chr22_30562682_C_T | chr22:30562682 | 0.321 | 0.403 | 0.153 | — |
| chr22_30562687_G_C | chr22:30562687 | -0.258 | -0.384 | -0.562 | — |
| chr22_30562675_C_T | chr22:30562675 | 0.314 | 0.429 | 0.482 | — |
| chr22_30562686_G_C | chr22:30562686 | -0.212 | -0.325 | -0.559 | — |
| chr22_30562684_C_T | chr22:30562684 | 0.312 | 0.392 | 0.263 | — |
| chr22_30562614_A_T | chr22:30562614 | -0.266 | -0.351 | -0.556 | — |
| chr22_30562688_G_A | chr22:30562688 | -0.189 | -0.309 | -0.550 | — |
| chr22_30562590_T_G | chr22:30562590 | 0.284 | 0.288 | 0.544 | — |
| chr22_30562688_G_T | chr22:30562688 | 0.304 | 0.425 | 0.116 | — |
| chr22_30562738_C_G | chr22:30562738 | -0.299 | -0.418 | -0.473 | — |
| chr22_30562673_C_T | chr22:30562673 | 0.296 | 0.379 | 0.415 | — |
| chr22_30562613_C_G | chr22:30562613 | 0.295 | 0.332 | 0.421 | — |
| chr22_30562675_C_A | chr22:30562675 | 0.292 | 0.338 | 0.299 | — |
| chr22_30562670_C_A | chr22:30562670 | -0.287 | -0.351 | -0.519 | — |
| chr22_30562591_G_A | chr22:30562591 | -0.289 | -0.353 | -0.482 | — |
| chr22_30562637_G_C | chr22:30562637 | -0.289 | -0.291 | -0.489 | — |
| chr22_30635349_C_T | chr22:30635349 | -0.203 | -0.036 | -0.513 | — |
| chr22_30562624_C_A | chr22:30562624 | -0.263 | -0.286 | -0.507 | — |
| chr22_30562679_A_C | chr22:30562679 | -0.283 | -0.339 | -0.373 | — |
| chr22_30562630_G_A | chr22:30562630 | 0.281 | 0.340 | 0.299 | — |
| chr22_30562604_C_A | chr22:30562604 | -0.280 | -0.296 | -0.421 | 0.0013% |
| chr22_30562651_G_C | chr22:30562651 | -0.279 | -0.345 | -0.415 | — |
| chr22_30562653_G_A | chr22:30562653 | 0.275 | 0.377 | 0.330 | — |
| chr22_30562604_C_G | chr22:30562604 | -0.273 | -0.306 | -0.409 | 0.225% |
| chr22_30562712_G_C | chr22:30562712 | -0.272 | -0.316 | -0.418 | — |
| chr22_30562633_C_A | chr22:30562633 | 0.270 | 0.288 | 0.452 | — |
| chr22_30562708_T_A | chr22:30562708 | 0.270 | 0.322 | 0.272 | — |
| chr22_30562632_T_A | chr22:30562632 | -0.266 | -0.314 | -0.470 | — |
| chr22_30562651_G_T | chr22:30562651 | -0.265 | -0.379 | -0.427 | — |
| chr22_30562612_C_G | chr22:30562612 | 0.263 | 0.319 | 0.421 | — |
| chr22_30562593_C_G | chr22:30562593 | 0.258 | 0.275 | 0.464 | — |
| chr22_30562607_G_C | chr22:30562607 | -0.248 | -0.296 | -0.464 | — |
| chr22_30562614_A_G | chr22:30562614 | 0.256 | 0.288 | 0.464 | — |
| chr22_30562666_A_C | chr22:30562666 | -0.259 | -0.379 | -0.434 | — |
| chr22_30562663_T_A | chr22:30562663 | -0.199 | -0.278 | -0.458 | — |
| chr22_30562643_G_T | chr22:30562643 | -0.220 | -0.187 | -0.452 | — |
| chr22_30562661_G_C | chr22:30562661 | 0.154 | 0.099 | 0.452 | — |
| chr22_30562768_A_T | chr22:30562768 | 0.130 | 0.229 | 0.452 | — |
| chr22_30635401_G_T | chr22:30635401 | -0.133 | -0.058 | -0.452 | — |
| chr22_30562698_T_A | chr22:30562698 | 0.253 | 0.379 | 0.308 | — |
| chr22_30562614_A_C | chr22:30562614 | -0.251 | -0.268 | -0.354 | — |
| chr22_30562637_G_A | chr22:30562637 | -0.247 | -0.291 | -0.446 | 0.0020% |
| chr22_30562689_C_A | chr22:30562689 | -0.186 | -0.265 | -0.446 | — |
| chr22_30562706_T_C | chr22:30562706 | 0.249 | 0.353 | 0.287 | — |
| chr22_30562714_C_G | chr22:30562714 | 0.246 | 0.364 | 0.324 | — |
| chr22_30562637_G_T | chr22:30562637 | -0.246 | -0.257 | -0.434 | — |
| chr22_30562738_C_T | chr22:30562738 | -0.245 | -0.325 | -0.339 | — |
| chr22_30562696_T_G | chr22:30562696 | -0.245 | -0.322 | -0.360 | — |
| chr22_30562633_C_T | chr22:30562633 | 0.217 | 0.252 | 0.434 | — |
| chr22_30562593_C_A | chr22:30562593 | 0.229 | 0.301 | 0.427 | — |
| chr22_30562646_A_C | chr22:30562646 | 0.212 | 0.265 | 0.421 | — |
| chr22_30562666_A_G | chr22:30562666 | -0.233 | -0.335 | -0.421 | — |
| chr22_30562640_C_A | chr22:30562640 | -0.235 | -0.265 | -0.409 | — |
| chr22_30562664_G_A | chr22:30562664 | 0.235 | 0.213 | 0.385 | — |
| chr22_30562638_A_G | chr22:30562638 | 0.233 | 0.265 | 0.397 | — |
| chr22_30562636_C_A | chr22:30562636 | 0.233 | 0.205 | 0.275 | — |
| chr22_30562643_G_A | chr22:30562643 | -0.215 | -0.208 | -0.415 | 0.0039% |
| chr22_30562660_T_A | chr22:30562660 | -0.229 | -0.291 | -0.348 | — |
| chr22_30635388_C_G | chr22:30635388 | 0.034 | 0.014 | 0.403 | — |
| chr22_30635397_T_G | chr22:30635397 | 0.026 | 0.032 | 0.403 | — |
| chr22_30562609_C_A | chr22:30562609 | 0.224 | 0.239 | 0.305 | — |
| chr22_30562649_T_A | chr22:30562649 | -0.219 | -0.270 | -0.397 | — |
| chr22_30562657_G_C | chr22:30562657 | -0.171 | -0.221 | -0.397 | — |
| chr22_30562680_C_A | chr22:30562680 | -0.205 | -0.321 | -0.397 | 0.0013% |
| chr22_30562716_G_C | chr22:30562716 | -0.220 | -0.256 | -0.284 | — |
| chr22_30562646_A_T | chr22:30562646 | 0.209 | 0.169 | 0.391 | — |
| chr22_30562739_A_C | chr22:30562739 | -0.218 | -0.301 | -0.302 | — |
| chr22_30562675_C_G | chr22:30562675 | 0.216 | 0.312 | 0.195 | — |
| chr22_30562612_C_A | chr22:30562612 | 0.215 | 0.278 | 0.311 | — |
| chr22_30562631_C_G | chr22:30562631 | -0.187 | -0.218 | -0.385 | — |
| chr22_30562694_G_C | chr22:30562694 | 0.146 | 0.206 | 0.385 | — |
| chr22_30562605_A_C | chr22:30562605 | 0.214 | 0.236 | 0.269 | — |
| chr22_30562735_G_A | chr22:30562735 | -0.213 | -0.283 | -0.345 | — |
| chr22_30562589_A_G | chr22:30562589 | 0.150 | 0.205 | 0.373 | — |
| chr22_30562660_T_C | chr22:30562660 | -0.208 | -0.275 | -0.256 | <0.001% |
| chr22_30562667_T_C | chr22:30562667 | -0.208 | -0.270 | -0.354 | — |
| chr22_30562649_T_G | chr22:30562649 | 0.177 | 0.158 | 0.366 | — |
| chr22_30635387_C_G | chr22:30635387 | 0.067 | 0.016 | 0.366 | — |
| chr22_30635389_C_G | chr22:30635389 | 0.051 | 0.014 | 0.366 | — |
| chr22_30562678_G_C | chr22:30562678 | -0.204 | -0.291 | -0.275 | — |
| chr22_30562608_C_A | chr22:30562608 | -0.203 | -0.262 | -0.299 | — |
| chr22_30562641_C_A | chr22:30562641 | -0.196 | -0.203 | -0.360 | — |
| chr22_30562673_C_A | chr22:30562673 | -0.030 | -0.109 | -0.360 | — |
| chr22_30562650_G_T | chr22:30562650 | -0.201 | -0.291 | -0.189 | — |
| chr22_30562650_G_A | chr22:30562650 | 0.201 | 0.156 | 0.287 | — |
| chr22_30562670_C_G | chr22:30562670 | -0.200 | -0.223 | -0.342 | — |
| chr22_30635383_G_C | chr22:30635383 | 0.055 | 0.019 | 0.354 | — |
| chr22_30635392_G_T | chr22:30635392 | 0.015 | -0.045 | -0.354 | — |
| chr22_30562623_T_C | chr22:30562623 | -0.197 | -0.177 | -0.293 | — |
| chr22_30562658_T_C | chr22:30562658 | -0.197 | -0.234 | -0.202 | — |
| chr22_30562596_G_A | chr22:30562596 | -0.196 | -0.221 | -0.305 | 0.0039% |
| chr22_30562635_C_A | chr22:30562635 | 0.195 | 0.273 | 0.287 | — |
| chr22_30562666_A_T | chr22:30562666 | -0.123 | -0.169 | -0.348 | — |
| chr22_30562683_T_A | chr22:30562683 | 0.195 | 0.178 | 0.116 | — |
| chr22_30562685_A_T | chr22:30562685 | -0.121 | -0.194 | -0.348 | — |
| chr22_30562690_A_T | chr22:30562690 | -0.151 | -0.247 | -0.345 | — |
| chr22_30562705_C_G | chr22:30562705 | -0.170 | -0.209 | -0.345 | — |
| chr22_30562629_A_C | chr22:30562629 | 0.178 | 0.234 | 0.342 | — |
| chr22_30562642_T_A | chr22:30562642 | 0.191 | 0.275 | 0.159 | — |
| chr22_30562665_A_G | chr22:30562665 | -0.157 | -0.203 | -0.342 | <0.001% |
| chr22_30562691_G_C | chr22:30562691 | 0.191 | 0.242 | 0.311 | — |
| chr22_30562595_C_G | chr22:30562595 | 0.189 | 0.190 | 0.305 | — |
| chr22_30562689_C_T | chr22:30562689 | -0.135 | -0.194 | -0.336 | — |
| chr22_30562676_A_G | chr22:30562676 | 0.188 | 0.273 | 0.275 | — |
| chr22_30562601_A_C | chr22:30562601 | 0.186 | 0.156 | 0.263 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.