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TSPAN4

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near TSPAN4

chr11:742,823..967,116, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr11_765472_C_G	chr11:765472	-0.753	-0.698	-1.000	<0.001%
chr11_765470_G_A	chr11:765470	-0.693	-0.633	-1.000	0.055%
chr11_765478_G_T	chr11:765478	-0.711	-0.684	-1.000	<0.001%
chr11_765481_G_A	chr11:765481	-0.770	-0.666	-1.000	<0.001%
chr11_747308_C_A	chr11:747308	-0.462	0.657	1.000	<0.001%
chr11_755543_C_G	chr11:755543	-0.677	-0.374	-0.948	0.0020%
chr11_765397_C_G	chr11:765397	0.648	0.313	0.948	0.0059%
chr11_747305_C_T	chr11:747305	-0.639	0.000	-0.078	0.0020%
chr11_765466_T_A	chr11:765466	-0.580	-0.342	-0.974	0.011%
chr11_747058_C_T	chr11:747058	0.305	0.273	0.954	0.0013%
chr11_747294_C_G	chr11:747294	-0.586	0.019	0.261	<0.001%
chr11_755563_G_A	chr11:755563	0.585	0.262	0.745	0.0013%
chr11_755538_C_T	chr11:755538	-0.486	-0.227	-0.908	<0.001%
chr11_747458_C_G	chr11:747458	0.569	0.083	0.575	<0.001%
chr11_747457_C_G	chr11:747457	0.536	0.073	0.471	0.0013%
chr11_747316_C_G	chr11:747316	-0.532	0.014	0.144	0.0085%
chr11_747402_A_G	chr11:747402	-0.303	-0.147	-0.837	0.0026%
chr11_747314_C_T	chr11:747314	-0.524	0.056	0.261	0.0033%
chr11_747454_C_T	chr11:747454	0.524	0.171	0.745	0.0013%
chr11_747306_G_C	chr11:747306	-0.520	-0.059	-0.065	0.171%
chr11_755609_G_C	chr11:755609	-0.518	-0.425	-0.680	0.0020%
chr11_747445_T_C	chr11:747445	-0.249	-0.176	-0.797	0.0013%
chr11_755539_G_A	chr11:755539	-0.498	-0.251	-0.784	0.0079%
chr11_747452_C_T	chr11:747452	0.497	0.149	0.758	0.100%
chr11_747310_G_A	chr11:747310	-0.491	0.134	0.706	<0.001%
chr11_755628_C_A	chr11:755628	0.485	0.565	0.686	<0.001%
chr11_747165_C_T	chr11:747165	0.194	0.160	0.745	<0.001%
chr11_747287_G_C	chr11:747287	-0.458	0.069	0.235	<0.001%
chr11_755545_T_C	chr11:755545	-0.455	-0.249	-0.608	<0.001%
chr11_747449_C_T	chr11:747449	0.429	0.137	0.680	0.0013%
chr11_748126_G_C	chr11:748126	0.076	-0.046	-0.680	0.0098%
chr11_747022_C_A	chr11:747022	0.120	0.081	0.667	<0.001%
chr11_747023_C_G	chr11:747023	0.087	0.107	0.667	<0.001%
chr11_747325_C_T	chr11:747325	0.414	0.081	0.379	<0.001%
chr11_747311_T_G	chr11:747311	0.210	-0.075	-0.654	<0.001%
chr11_765402_G_C	chr11:765402	-0.099	-0.093	-0.654	0.047%
chr11_747469_C_T	chr11:747469	0.396	0.126	0.327	0.0013%
chr11_747470_C_A	chr11:747470	0.392	0.081	0.196	<0.001%
chr11_747315_G_C	chr11:747315	-0.091	0.153	0.614	0.0013%
chr11_747450_G_A	chr11:747450	0.268	0.126	0.614	<0.001%
chr11_747373_T_C	chr11:747373	-0.153	-0.171	-0.601	0.0079%
chr11_747448_C_T	chr11:747448	0.303	0.152	0.588	<0.001%
chr11_765461_G_A	chr11:765461	0.368	0.067	0.255	0.0013%
chr11_747035_C_T	chr11:747035	0.058	0.058	0.562	<0.001%
chr11_747350_A_C	chr11:747350	-0.320	-0.125	-0.562	0.0020%
chr11_747424_G_A	chr11:747424	0.101	-0.021	0.562	0.0013%
chr11_747210_C_G	chr11:747210	0.344	-0.014	0.183	<0.001%
chr11_747433_G_A	chr11:747433	0.062	0.067	0.536	<0.001%
chr11_747287_G_A	chr11:747287	-0.334	0.053	0.183	0.0013%
chr11_747466_A_G	chr11:747466	0.334	0.040	0.092	0.0039%
chr11_747635_C_T	chr11:747635	0.128	0.075	0.523	<0.001%
chr11_747354_G_T	chr11:747354	0.256	0.072	0.510	<0.001%
chr11_747446_C_T	chr11:747446	0.241	0.088	0.510	0.0094%
chr11_747600_G_T	chr11:747600	-0.025	0.077	0.510	<0.001%
chr11_748128_G_A	chr11:748128	0.118	-0.027	-0.510	<0.001%
chr11_755553_G_T	chr11:755553	-0.287	-0.157	-0.510	<0.001%
chr11_747370_G_A	chr11:747370	0.124	0.236	0.497	<0.001%
chr11_747295_G_T	chr11:747295	0.297	0.094	0.144	<0.001%
chr11_747070_T_C	chr11:747070	-0.043	-0.065	-0.458	0.0020%
chr11_747266_G_T	chr11:747266	0.289	0.062	0.105	<0.001%
chr11_747801_G_T	chr11:747801	0.041	0.062	0.458	0.0013%
chr11_747467_C_A	chr11:747467	0.287	0.102	0.131	<0.001%
chr11_755680_G_T	chr11:755680	0.285	0.329	0.353	0.0020%
chr11_747432_C_T	chr11:747432	0.004	0.128	0.444	0.0026%
chr11_747838_A_C	chr11:747838	-0.008	-0.046	-0.444	<0.001%
chr11_747491_T_C	chr11:747491	-0.278	0.034	0.092	0.0072%
chr11_747033_C_G	chr11:747033	0.008	0.085	0.431	<0.001%
chr11_747599_G_A	chr11:747599	0.037	0.077	0.431	0.0013%
chr11_747674_G_C	chr11:747674	-0.082	0.014	0.431	0.0020%
chr11_748279_G_C	chr11:748279	0.272	0.169	-0.052	<0.001%
chr11_776793_T_A	chr11:776793	0.179	0.149	0.431	0.0026%
chr11_765893_G_A	chr11:765893	-0.002	-0.038	-0.425	<0.001%
chr11_765896_A_G	chr11:765896	-0.019	-0.045	-0.425	<0.001%
chr11_747350_A_G	chr11:747350	-0.167	-0.088	-0.418	0.0013%
chr11_755536_C_T	chr11:755536	0.263	0.173	0.359	<0.001%
chr11_747037_C_T	chr11:747037	-0.012	0.072	0.405	<0.001%
chr11_747630_G_A	chr11:747630	0.027	0.043	0.405	<0.001%
chr11_755683_C_T	chr11:755683	0.163	0.236	0.405	<0.001%
chr11_776984_G_A	chr11:776984	0.230	0.295	0.402	0.014%
chr11_747468_C_G	chr11:747468	0.252	0.086	0.144	<0.001%
chr11_755559_C_T	chr11:755559	0.251	0.137	0.222	0.0085%
chr11_747076_C_T	chr11:747076	0.249	0.024	0.353	<0.001%
chr11_747342_C_T	chr11:747342	0.249	0.075	0.275	0.0033%
chr11_746849_G_A	chr11:746849	0.039	-0.144	0.392	0.0020%
chr11_747336_G_C	chr11:747336	-0.155	-0.067	0.392	<0.001%
chr11_748124_A_T	chr11:748124	0.122	0.059	-0.392	0.0020%
chr11_777066_C_T	chr11:777066	-0.095	0.050	0.392	<0.001%
chr11_755599_C_G	chr11:755599	-0.243	-0.163	-0.294	<0.001%
chr11_776700_T_A	chr11:776700	-0.151	-0.326	-0.386	0.023%
chr11_776702_G_A	chr11:776702	-0.106	-0.228	-0.386	0.0013%
chr11_747356_G_T	chr11:747356	0.128	0.078	0.379	0.0046%
chr11_747424_G_T	chr11:747424	-0.029	0.022	0.379	0.015%
chr11_747213_T_G	chr11:747213	-0.008	-0.062	-0.366	0.0053%
chr11_747632_C_T	chr11:747632	-0.002	0.056	0.366	<0.001%
chr11_776790_C_A	chr11:776790	0.229	0.176	0.294	<0.001%
chr11_746987_C_T	chr11:746987	0.054	0.043	0.353	0.0013%
chr11_746991_C_T	chr11:746991	0.037	0.037	0.353	<0.001%
chr11_747406_G_A	chr11:747406	0.126	0.067	0.353	<0.001%
chr11_747765_G_A	chr11:747765	0.025	0.042	0.353	<0.001%
chr11_765396_C_A	chr11:765396	0.131	0.364	0.353	<0.001%
chr11_765401_C_T	chr11:765401	0.024	0.182	0.353	<0.001%
chr11_747193_G_A	chr11:747193	0.216	0.086	0.301	0.0026%
chr11_748294_C_T	chr11:748294	0.216	-0.029	-0.013	<0.001%
chr11_755677_G_A	chr11:755677	-0.216	-0.176	-0.307	<0.001%
chr11_746982_A_C	chr11:746982	0.070	0.002	0.340	0.0020%
chr11_747364_C_A	chr11:747364	0.091	0.096	0.340	<0.001%
chr11_747375_G_A	chr11:747375	0.064	0.083	0.340	<0.001%
chr11_747387_C_T	chr11:747387	0.025	0.099	0.340	0.0020%
chr11_747663_G_C	chr11:747663	0.031	-0.010	0.340	<0.001%
chr11_747674_G_T	chr11:747674	-0.012	0.026	0.340	<0.001%
chr11_747821_G_A	chr11:747821	0.029	0.034	0.340	<0.001%
chr11_755568_G_A	chr11:755568	0.214	0.129	0.327	0.066%
chr11_765400_C_T	chr11:765400	-0.031	0.099	0.340	<0.001%
chr11_755633_C_T	chr11:755633	-0.208	-0.227	-0.320	<0.001%
chr11_747033_C_T	chr11:747033	0.008	0.075	0.327	<0.001%
chr11_747281_G_T	chr11:747281	0.206	0.061	0.052	0.0059%
chr11_747294_C_T	chr11:747294	-0.095	0.120	0.327	0.0020%
chr11_747874_G_C	chr11:747874	0.002	0.035	0.327	0.0046%
chr11_747261_C_T	chr11:747261	-0.202	0.029	-0.026	0.0013%
chr11_747229_T_A	chr11:747229	0.198	-0.026	0.170	<0.001%
chr11_747383_G_T	chr11:747383	0.066	0.056	0.314	<0.001%
chr11_747435_G_A	chr11:747435	0.058	0.078	0.314	0.0013%
chr11_747621_A_C	chr11:747621	-0.043	-0.035	-0.314	<0.001%
chr11_747809_A_G	chr11:747809	-0.023	-0.042	-0.314	<0.001%
chr11_747845_G_A	chr11:747845	0.033	0.034	0.314	<0.001%
chr11_748195_G_C	chr11:748195	-0.056	0.014	-0.314	0.0013%
chr11_747183_G_T	chr11:747183	-0.192	-0.040	-0.105	0.0013%
chr11_755672_T_G	chr11:755672	-0.192	-0.192	-0.235	0.0020%
chr11_747367_C_T	chr11:747367	-0.089	0.118	0.301	0.0013%
chr11_747843_C_G	chr11:747843	-0.033	-0.073	-0.301	<0.001%
chr11_765599_G_A	chr11:765599	0.048	0.112	0.294	1.98%
chr11_755682_T_C	chr11:755682	-0.184	-0.185	-0.235	<0.001%
chr11_747064_C_T	chr11:747064	0.019	0.032	0.288	<0.001%
chr11_747274_G_A	chr11:747274	-0.181	0.061	0.222	0.072%
chr11_747601_G_T	chr11:747601	-0.031	0.064	0.288	0.047%
chr11_776752_C_A	chr11:776752	-0.021	-0.046	-0.288	<0.001%
chr11_755604_G_C	chr11:755604	-0.170	-0.123	-0.281	<0.001%
chr11_776677_C_G	chr11:776677	0.085	0.206	0.281	<0.001%
chr11_776715_C_T	chr11:776715	0.004	-0.037	-0.281	<0.001%
chr11_747495_C_G	chr11:747495	0.033	0.011	0.275	0.0026%
chr11_747639_A_G	chr11:747639	0.035	-0.034	-0.275	0.0026%
chr11_776949_G_A	chr11:776949	-0.079	-0.216	-0.268	0.068%
chr11_747470_C_T	chr11:747470	0.167	0.059	0.183	0.021%
chr11_746843_A_C	chr11:746843	0.107	0.027	0.261	0.129%
chr11_747281_G_A	chr11:747281	0.165	0.073	0.013	<0.001%
chr11_747319_G_T	chr11:747319	0.165	0.058	0.157	0.0013%
chr11_747438_C_T	chr11:747438	-0.004	0.091	0.261	<0.001%
chr11_747471_T_C	chr11:747471	-0.060	-0.056	-0.261	<0.001%
chr11_747608_G_A	chr11:747608	0.074	0.032	0.261	0.0013%
chr11_747830_G_A	chr11:747830	0.012	0.034	0.261	0.024%
chr11_776753_G_A	chr11:776753	0.027	0.014	-0.261	0.015%
chr11_747236_C_A	chr11:747236	-0.161	0.006	0.118	<0.001%
chr11_765406_C_T	chr11:765406	0.021	0.067	0.255	0.0033%
chr11_747184_C_T	chr11:747184	-0.159	-0.061	-0.131	<0.001%
chr11_746903_G_A	chr11:746903	-0.060	-0.006	-0.248	0.0013%
chr11_746970_C_T	chr11:746970	-0.008	0.042	0.248	<0.001%
chr11_747062_C_T	chr11:747062	0.039	0.010	0.248	<0.001%
chr11_747441_C_G	chr11:747441	0.142	-0.032	0.248	0.0033%
chr11_747544_C_G	chr11:747544	0.039	0.037	0.248	0.0020%
chr11_747647_G_A	chr11:747647	0.014	0.037	0.248	<0.001%
chr11_747653_C_T	chr11:747653	0.052	0.104	0.248	<0.001%
chr11_747881_G_C	chr11:747881	0.039	0.042	0.248	<0.001%
chr11_765797_A_G	chr11:765797	0.041	0.029	0.248	<0.001%
chr11_776728_G_A	chr11:776728	-0.008	-0.042	-0.248	0.0013%
chr11_755405_A_C	chr11:755405	0.063	0.024	0.242	0.011%
chr11_755609_G_A	chr11:755609	-0.109	-0.109	-0.242	0.0013%
chr11_765407_C_G	chr11:765407	-0.001	-0.013	0.242	0.0046%
chr11_776675_C_T	chr11:776675	0.085	0.070	0.242	<0.001%
chr11_746985_C_T	chr11:746985	-0.039	0.045	0.235	<0.001%
chr11_747139_G_A	chr11:747139	-0.025	0.037	0.235	0.0020%
chr11_747325_C_A	chr11:747325	0.136	0.110	0.235	0.0020%
chr11_747372_C_G	chr11:747372	-0.113	-0.019	-0.235	<0.001%
chr11_747827_C_T	chr11:747827	0.031	0.021	0.235	<0.001%
chr11_747878_G_A	chr11:747878	0.041	0.030	0.235	0.032%
chr11_747904_C_T	chr11:747904	0.004	0.008	0.235	0.0020%
chr11_748143_A_T	chr11:748143	-0.029	-0.059	-0.235	0.0013%
chr11_748235_C_T	chr11:748235	-0.002	-0.032	-0.235	<0.001%
chr11_755671_G_A	chr11:755671	-0.148	-0.150	-0.203	0.0013%
chr11_747186_G_C	chr11:747186	-0.146	-0.073	-0.183	<0.001%
chr11_747299_C_A	chr11:747299	0.144	0.054	0.183	0.045%
chr11_755470_G_A	chr11:755470	0.116	0.188	0.229	<0.001%
chr11_776728_G_T	chr11:776728	-0.031	-0.032	-0.229	0.0033%
chr11_776806_C_T	chr11:776806	-0.091	-0.092	-0.229	<0.001%
chr11_777056_C_A	chr11:777056	-0.066	-0.053	-0.229	<0.001%
chr11_747046_T_C	chr11:747046	-0.128	-0.091	-0.222	0.0020%
chr11_747237_C_A	chr11:747237	0.041	0.038	0.222	<0.001%
chr11_747302_G_T	chr11:747302	0.070	0.065	0.222	<0.001%
chr11_747357_C_A	chr11:747357	0.049	0.089	0.222	<0.001%
chr11_747426_C_T	chr11:747426	-0.008	0.048	0.222	0.0026%
chr11_747760_G_T	chr11:747760	0.058	0.030	0.222	<0.001%
chr11_747787_G_T	chr11:747787	-0.019	0.027	0.222	<0.001%
chr11_748192_C_T	chr11:748192	-0.074	-0.062	-0.222	<0.001%
chr11_747264_G_C	chr11:747264	0.136	0.013	0.039	0.0013%
chr11_776676_C_T	chr11:776676	0.078	0.123	0.216	<0.001%
chr11_776825_G_T	chr11:776825	-0.022	-0.095	-0.216	0.0066%
chr11_776969_C_A	chr11:776969	0.046	0.094	0.216	<0.001%
chr11_765535_T_G	chr11:765535	0.136	0.064	0.190	0.068%
chr11_747060_A_T	chr11:747060	0.134	0.011	0.144	0.0020%
chr11_746711_C_T	chr11:746711	-0.068	0.032	-0.209	0.0013%
chr11_746992_T_C	chr11:746992	0.027	-0.035	-0.209	44.6%

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.