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VPS53
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near VPS53
chr17:408,667..814,839, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR ▾ | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr17_410128_A_C | chr17:410128 | 29,312 | 2,816 | 12,544 | 6.6e-6 |
| chr17_410368_C_G | chr17:410368 | -20,992 | -2,176 | -512 | 6.6e-6 |
| chr17_419135_T_A | chr17:419135 | 17,472 | 12,832 | 19,456 | 6.6e-6 |
| chr17_410368_C_T | chr17:410368 | -16,320 | -1,632 | -256 | 2.6e-5 |
| chr17_419136_A_T | chr17:419136 | 15,680 | 10,336 | 17,152 | 2.0e-5 |
| chr17_410458_G_C | chr17:410458 | -13,824 | -1,024 | -6,912 | 6.6e-6 |
| chr17_410134_G_A | chr17:410134 | 13,696 | 992 | 14,592 | 5.9e-5 |
| chr17_411197_C_T | chr17:411197 | 12,416 | 3,344 | 4,096 | 1.3e-5 |
| chr17_410324_C_G | chr17:410324 | -12,352 | 1,056 | 13,312 | 6.6e-6 |
| chr17_410176_C_T | chr17:410176 | -11,392 | -960 | 5,120 | 2.6e-5 |
| chr17_410458_G_A | chr17:410458 | -11,136 | -1,440 | -5,376 | 6.6e-6 |
| chr17_419203_A_T | chr17:419203 | -10,208 | -7,168 | -11,392 | 6.6e-6 |
| chr17_419269_A_G | chr17:419269 | -10,176 | -6,848 | -9,408 | 2.0e-5 |
| chr17_410179_A_T | chr17:410179 | -9,600 | -1,504 | 256 | 6.6e-6 |
| chr17_410223_A_C | chr17:410223 | 9,344 | 2,912 | 12,544 | 6.6e-6 |
| chr17_410470_C_T | chr17:410470 | -9,280 | -1,856 | -8,704 | 6.6e-6 |
| chr17_410176_C_A | chr17:410176 | -8,960 | -480 | 1,792 | 6.6e-6 |
| chr17_419274_A_G | chr17:419274 | -8,896 | -5,728 | -9,344 | 8.5e-5 |
| chr17_419267_A_G | chr17:419267 | -8,736 | -5,760 | -7,424 | 6.6e-6 |
| chr17_419114_C_A | chr17:419114 | 8,640 | 4,992 | 8,128 | 6.8e-6 |
| chr17_410111_G_T | chr17:410111 | 8,448 | 416 | 1,024 | 6.6e-6 |
| chr17_410183_G_A | chr17:410183 | -8,320 | 448 | 13,312 | 2.0e-5 |
| chr17_410177_G_A | chr17:410177 | -8,192 | -864 | 2,304 | 1.3e-5 |
| chr17_410541_G_A | chr17:410541 | 7,872 | 320 | 5,376 | 6.6e-6 |
| chr17_410348_G_C | chr17:410348 | -7,680 | -64 | 22,528 | 7.9e-5 |
| chr17_411946_G_C | chr17:411946 | 7,552 | 2,208 | 10,752 | — |
| chr17_410359_C_T | chr17:410359 | 7,488 | 2,880 | 8,192 | 7.2e-5 |
| chr17_410388_C_T | chr17:410388 | 7,488 | 768 | 4,864 | 2.0e-5 |
| chr17_410542_G_T | chr17:410542 | 7,360 | 608 | 8,192 | 6.6e-6 |
| chr17_411192_C_T | chr17:411192 | 7,328 | 2,592 | 1,152 | 6.6e-6 |
| chr17_410019_T_G | chr17:410019 | 7,040 | 1,696 | 6,400 | 1.3e-5 |
| chr17_410043_G_T | chr17:410043 | 6,912 | 1,824 | 6,400 | 6.6e-6 |
| chr17_419204_C_T | chr17:419204 | -6,784 | -5,376 | -7,680 | 6.6e-6 |
| chr17_410268_G_A | chr17:410268 | -6,720 | 1,344 | 4,352 | 6.6e-6 |
| chr17_410482_G_A | chr17:410482 | 6,656 | 1,216 | 8,704 | 6.6e-6 |
| chr17_410042_C_T | chr17:410042 | 6,656 | 1,120 | 7,168 | 6.6e-6 |
| chr17_410000_G_T | chr17:410000 | 6,528 | 1,856 | 6,144 | 6.6e-6 |
| chr17_410471_G_A | chr17:410471 | -6,528 | -992 | -5,888 | 7.9e-5 |
| chr17_419117_T_G | chr17:419117 | 6,432 | 3,584 | 4,608 | 1.4e-5 |
| chr17_410006_G_A | chr17:410006 | 6,400 | 416 | 12,544 | 2.0e-5 |
| chr17_410705_A_C | chr17:410705 | 6,400 | 1,696 | 7,424 | 2.0e-5 |
| chr17_410153_T_C | chr17:410153 | -6,272 | -1,696 | -3,840 | 2.0e-5 |
| chr17_419183_G_A | chr17:419183 | -6,240 | -4,960 | -8,512 | 6.6e-6 |
| chr17_419294_G_A | chr17:419294 | 6,144 | 4,128 | 5,952 | 6.6e-6 |
| chr17_409981_C_T | chr17:409981 | -6,016 | -576 | -4,096 | 6.6e-6 |
| chr17_410332_G_T | chr17:410332 | -5,824 | -480 | -1,280 | 2.0e-5 |
| chr17_410199_T_G | chr17:410199 | 5,760 | 64 | 5,376 | 8.0e-4 |
| chr17_410433_T_G | chr17:410433 | -5,760 | -1,024 | -2,304 | 6.6e-6 |
| chr17_410243_C_T | chr17:410243 | -5,696 | -1,536 | -4,864 | 1.3e-4 |
| chr17_410389_G_A | chr17:410389 | -5,568 | -1,568 | -3,840 | 2.0e-5 |
| chr17_419181_G_A | chr17:419181 | -5,536 | -4,544 | -7,232 | 6.6e-6 |
| chr17_419136_A_G | chr17:419136 | 5,504 | 3,840 | 8,192 | 6.6e-6 |
| chr17_410514_C_T | chr17:410514 | -5,504 | -544 | -3,840 | 6.6e-6 |
| chr17_410190_G_C | chr17:410190 | -5,376 | -1,152 | -3,840 | 6.6e-6 |
| chr17_410507_G_A | chr17:410507 | -5,376 | -352 | -2,560 | 1.1e-4 |
| chr17_410243_C_G | chr17:410243 | -5,248 | -1,792 | -4,096 | 6.6e-6 |
| chr17_410374_G_C | chr17:410374 | -5,184 | -192 | -512 | 1.3e-5 |
| chr17_410088_C_T | chr17:410088 | 5,120 | -768 | 4,096 | 1.3e-5 |
| chr17_410117_C_T | chr17:410117 | -5,120 | -384 | -3,840 | 1.3e-5 |
| chr17_410373_C_G | chr17:410373 | 5,056 | 1,536 | 5,888 | 2.6e-5 |
| chr17_409960_T_C | chr17:409960 | 4,992 | 928 | 7,680 | 2.9e-4 |
| chr17_409980_G_A | chr17:409980 | -4,992 | -192 | -2,816 | 9.7e-4 |
| chr17_410412_G_A | chr17:410412 | -4,992 | 192 | 3,072 | 6.6e-6 |
| chr17_410414_G_C | chr17:410414 | -4,928 | 1,184 | 1,792 | 2.0e-5 |
| chr17_410094_C_A | chr17:410094 | 4,864 | -736 | 10,496 | 6.6e-6 |
| chr17_410121_C_G | chr17:410121 | -4,864 | -384 | -1,280 | 1.3e-5 |
| chr17_410632_C_G | chr17:410632 | 4,864 | 384 | 2,816 | 6.6e-6 |
| chr17_409861_C_T | chr17:409861 | -4,800 | -1,376 | -10,240 | 5.3e-5 |
| chr17_419171_G_T | chr17:419171 | 4,800 | 2,656 | 6,912 | 5.3e-5 |
| chr17_409987_C_A | chr17:409987 | -4,736 | -992 | -2,816 | 1.3e-5 |
| chr17_409930_T_A | chr17:409930 | 4,672 | 1,312 | 7,168 | 6.6e-6 |
| chr17_409980_G_C | chr17:409980 | -4,608 | 256 | -2,816 | 1.3e-5 |
| chr17_410648_T_G | chr17:410648 | -4,544 | 1,024 | 2,816 | 1.8e-4 |
| chr17_409910_C_T | chr17:409910 | 4,480 | 2,400 | 11,264 | 6.6e-6 |
| chr17_409864_G_C | chr17:409864 | 4,480 | 576 | 5,120 | 6.6e-6 |
| chr17_410515_G_C | chr17:410515 | 4,480 | 1,216 | 4,608 | 6.6e-6 |
| chr17_410369_G_C | chr17:410369 | 4,416 | 928 | 5,632 | 6.6e-6 |
| chr17_419188_A_C | chr17:419188 | -4,384 | -4,160 | -5,888 | 1.3e-5 |
| chr17_410369_G_T | chr17:410369 | 4,352 | 1,024 | 6,400 | 3.9e-5 |
| chr17_410514_C_A | chr17:410514 | -4,352 | -384 | -4,352 | 6.6e-6 |
| chr17_410749_G_C | chr17:410749 | 4,288 | 1,728 | 7,424 | 4.6e-5 |
| chr17_410367_G_C | chr17:410367 | 4,288 | 704 | 4,608 | 6.6e-6 |
| chr17_410357_C_A | chr17:410357 | -4,288 | -1,120 | -4,096 | 6.6e-6 |
| chr17_410396_C_T | chr17:410396 | -4,288 | -128 | -3,072 | 1.3e-5 |
| chr17_419357_G_T | chr17:419357 | 4,288 | 2,080 | 832 | 8.5e-5 |
| chr17_410403_G_C | chr17:410403 | 4,224 | 608 | 7,168 | 2.6e-5 |
| chr17_409958_C_A | chr17:409958 | -4,224 | 224 | -5,120 | 6.6e-6 |
| chr17_410486_C_G | chr17:410486 | 4,224 | 992 | 3,072 | 2.6e-5 |
| chr17_419218_A_G | chr17:419218 | 4,192 | 2,368 | 4,864 | 6.6e-6 |
| chr17_410558_C_T | chr17:410558 | 4,160 | 384 | 4,608 | 1.3e-5 |
| chr17_411965_G_C | chr17:411965 | 4,128 | 512 | 5,632 | — |
| chr17_410226_C_T | chr17:410226 | 4,096 | 128 | 19,968 | 1.3e-5 |
| chr17_419305_T_G | chr17:419305 | -4,064 | -3,712 | -4,992 | 6.6e-6 |
| chr17_419337_C_T | chr17:419337 | -4,032 | -2,528 | -4,736 | 2.0e-5 |
| chr17_410326_C_T | chr17:410326 | -4,032 | -256 | -1,024 | 6.6e-6 |
| chr17_410508_G_A | chr17:410508 | -4,032 | -544 | -1,024 | 1.6e-1 |
| chr17_410043_G_A | chr17:410043 | 3,968 | 1,280 | 5,376 | 6.6e-6 |
| chr17_410115_C_T | chr17:410115 | -3,968 | 0 | -2,560 | 1.3e-5 |
| chr17_410372_C_T | chr17:410372 | 3,968 | 960 | 2,560 | 6.6e-6 |
| chr17_410361_G_A | chr17:410361 | -3,904 | -576 | -4,608 | 6.6e-6 |
| chr17_410468_G_A | chr17:410468 | -3,776 | -896 | -8,960 | 1.3e-5 |
| chr17_411204_C_T | chr17:411204 | -3,776 | -1,296 | -2,304 | 6.6e-6 |
| chr17_410426_G_T | chr17:410426 | 3,712 | 480 | 5,376 | 6.6e-6 |
| chr17_410420_G_A | chr17:410420 | 3,712 | 320 | 4,864 | 1.3e-5 |
| chr17_410200_C_A | chr17:410200 | -3,712 | -1,088 | -1,536 | 6.6e-6 |
| chr17_419221_C_T | chr17:419221 | 3,680 | 3,104 | 5,248 | 6.6e-6 |
| chr17_410189_C_A | chr17:410189 | -3,584 | -480 | -768 | 2.0e-5 |
| chr17_419315_C_G | chr17:419315 | -3,520 | -2,208 | -3,712 | 6.6e-6 |
| chr17_410005_C_T | chr17:410005 | -3,456 | -960 | 4,096 | 6.6e-6 |
| chr17_409920_T_C | chr17:409920 | 3,456 | 128 | 2,304 | 6.6e-6 |
| chr17_410554_C_T | chr17:410554 | 3,392 | -448 | 256 | 4.6e-5 |
| chr17_419327_A_G | chr17:419327 | -3,360 | -3,040 | -3,712 | 6.6e-6 |
| chr17_419242_C_A | chr17:419242 | 3,360 | -1,504 | -3,328 | 9.9e-5 |
| chr17_410265_C_T | chr17:410265 | 3,328 | 96 | 2,048 | 2.9e-4 |
| chr17_411948_A_C | chr17:411948 | 3,296 | 1,152 | 1,408 | — |
| chr17_409887_G_A | chr17:409887 | -3,264 | -1,344 | -5,376 | 1.3e-5 |
| chr17_410367_G_T | chr17:410367 | 3,264 | 960 | 4,864 | 6.6e-6 |
| chr17_410026_G_A | chr17:410026 | 3,200 | 416 | 1,280 | 6.6e-6 |
| chr17_410089_G_A | chr17:410089 | -3,200 | -1,440 | -768 | 1.3e-5 |
| chr17_410407_C_T | chr17:410407 | -3,136 | -416 | -1,280 | 2.5e-3 |
| chr17_411202_G_A | chr17:411202 | -3,136 | -1,872 | -1,536 | 6.6e-6 |
| chr17_419305_T_A | chr17:419305 | -3,072 | -2,976 | -4,352 | 1.3e-5 |
| chr17_410297_C_A | chr17:410297 | -3,008 | 800 | 5,376 | 6.6e-6 |
| chr17_410558_C_G | chr17:410558 | 3,008 | 352 | 3,584 | 3.9e-5 |
| chr17_419167_G_A | chr17:419167 | -2,976 | -2,176 | -3,712 | 1.3e-5 |
| chr17_409803_A_G | chr17:409803 | 2,944 | 1,568 | 10,240 | 1.3e-5 |
| chr17_409973_G_T | chr17:409973 | 2,944 | 1,376 | 3,840 | 6.6e-6 |
| chr17_410231_A_G | chr17:410231 | 2,944 | 288 | 3,584 | 3.3e-5 |
| chr17_410457_C_T | chr17:410457 | 2,880 | 608 | 5,632 | 9.5e-4 |
| chr17_411971_T_A | chr17:411971 | 2,816 | 416 | 5,120 | — |
| chr17_410000_G_A | chr17:410000 | 2,688 | 864 | 6,656 | 2.0e-5 |
| chr17_409968_C_T | chr17:409968 | -2,688 | -416 | -3,328 | 6.6e-6 |
| chr17_410709_A_C | chr17:410709 | -2,624 | -640 | -6,656 | 6.6e-6 |
| chr17_410250_G_A | chr17:410250 | 2,624 | 1,152 | 3,584 | 6.6e-6 |
| chr17_410436_C_T | chr17:410436 | 2,560 | 1,056 | 6,144 | 1.3e-3 |
| chr17_410444_C_T | chr17:410444 | -2,560 | 320 | 6,144 | 6.6e-6 |
| chr17_409941_C_T | chr17:409941 | -2,560 | -256 | -3,840 | 6.6e-6 |
| chr17_419166_T_G | chr17:419166 | 2,528 | 2,176 | 3,136 | 6.6e-6 |
| chr17_411971_T_C | chr17:411971 | 2,464 | 416 | 4,096 | — |
| chr17_419210_T_G | chr17:419210 | -2,304 | -2,016 | -3,456 | 1.3e-5 |
| chr17_410351_G_T | chr17:410351 | -2,176 | 672 | 7,424 | 3.5e-1 |
| chr17_410425_G_A | chr17:410425 | 2,112 | 928 | 6,912 | 6.6e-6 |
| chr17_410516_G_A | chr17:410516 | 2,112 | 704 | 5,376 | 6.6e-6 |
| chr17_410206_C_A | chr17:410206 | 2,048 | 0 | 3,584 | 1.3e-5 |
| chr17_410409_C_T | chr17:410409 | -1,920 | 160 | 3,584 | 1.3e-5 |
| chr17_410228_C_T | chr17:410228 | 1,856 | 576 | 4,608 | 2.0e-5 |
| chr17_410049_G_A | chr17:410049 | 1,792 | 448 | 8,448 | 6.6e-6 |
| chr17_410386_G_A | chr17:410386 | -1,792 | 288 | 5,632 | 6.6e-6 |
| chr17_410321_A_T | chr17:410321 | -1,728 | -160 | 6,656 | 3.9e-5 |
| chr17_410142_G_A | chr17:410142 | -1,664 | -352 | -3,328 | 6.6e-6 |
| chr17_410219_A_G | chr17:410219 | -1,600 | -1,056 | -4,096 | 3.9e-5 |
| chr17_410024_A_G | chr17:410024 | 1,536 | 736 | -4,096 | 1.3e-5 |
| chr17_411039_G_C | chr17:411039 | 1,408 | -1,184 | 5,376 | 1.3e-5 |
| chr17_409989_G_A | chr17:409989 | -1,408 | -640 | -4,352 | 7.2e-5 |
| chr17_410155_C_T | chr17:410155 | -1,408 | -1,408 | -3,328 | 2.0e-5 |
| chr17_410448_C_T | chr17:410448 | -1,344 | 32 | 4,096 | 2.3e-3 |
| chr17_410460_C_T | chr17:410460 | 1,216 | 448 | 4,864 | 2.6e-4 |
| chr17_410297_C_G | chr17:410297 | 1,216 | 608 | 3,840 | 1.3e-5 |
| chr17_409949_A_G | chr17:409949 | 1,152 | 800 | 8,192 | 6.6e-6 |
| chr17_410260_G_A | chr17:410260 | 1,152 | -960 | -4,608 | 4.0e-5 |
| chr17_410031_C_T | chr17:410031 | -1,152 | -480 | -3,840 | 6.6e-6 |
| chr17_410023_G_T | chr17:410023 | 1,152 | 928 | 3,584 | 8.6e-5 |
| chr17_410243_C_A | chr17:410243 | -1,152 | -96 | -3,584 | 1.3e-5 |
| chr17_410357_C_G | chr17:410357 | -1,088 | -1,120 | -6,144 | 6.6e-6 |
| chr17_410373_C_T | chr17:410373 | -1,088 | 928 | 4,608 | 6.6e-6 |
| chr17_410373_C_A | chr17:410373 | 1,024 | 1,696 | 12,544 | 6.6e-5 |
| chr17_410559_A_G | chr17:410559 | 1,024 | 480 | 6,144 | 2.6e-5 |
| chr17_410400_A_C | chr17:410400 | 1,024 | -192 | -3,584 | 6.6e-6 |
| chr17_409810_T_G | chr17:409810 | 960 | 480 | 4,864 | 1.1e-4 |
| chr17_411031_A_G | chr17:411031 | 928 | -1,152 | 4,992 | 6.6e-6 |
| chr17_419257_T_C | chr17:419257 | 928 | 416 | 3,840 | 6.6e-6 |
| chr17_410048_C_T | chr17:410048 | 896 | 96 | 6,144 | 2.6e-5 |
| chr17_409894_A_G | chr17:409894 | 896 | 896 | 4,864 | 6.6e-6 |
| chr17_410308_G_A | chr17:410308 | -896 | -960 | -4,608 | 6.6e-6 |
| chr17_410822_G_A | chr17:410822 | 896 | -32 | -3,584 | 6.6e-6 |
| chr17_410782_A_G | chr17:410782 | -832 | 288 | 11,008 | 2.6e-5 |
| chr17_410274_G_A | chr17:410274 | -768 | 2,368 | 16,384 | 6.6e-6 |
| chr17_410291_G_A | chr17:410291 | 704 | 672 | 3,840 | 6.6e-6 |
| chr17_410293_G_A | chr17:410293 | 704 | 1,056 | 3,328 | 6.6e-6 |
| chr17_410321_A_C | chr17:410321 | 704 | -64 | 3,328 | 6.6e-6 |
| chr17_410391_T_C | chr17:410391 | -640 | -1,152 | -4,608 | 3.5e-1 |
| chr17_410301_C_T | chr17:410301 | 512 | -1,152 | -5,888 | 6.6e-6 |
| chr17_409953_G_A | chr17:409953 | 512 | 992 | 5,632 | 2.0e-5 |
| chr17_409840_C_T | chr17:409840 | -512 | 192 | -3,584 | 6.6e-6 |
| chr17_422645_T_C | chr17:422645 | 448 | 480 | 4,352 | 2.0e-5 |
| chr17_410368_C_A | chr17:410368 | -448 | 480 | 3,328 | 2.8e-4 |
| chr17_410794_A_G | chr17:410794 | 384 | 96 | 4,096 | 6.6e-6 |
| chr17_419131_G_T | chr17:419131 | -384 | -192 | -3,840 | 4.0e-4 |
| chr17_411082_C_G | chr17:411082 | -288 | 800 | 4,096 | 1.3e-5 |
| chr17_410820_G_C | chr17:410820 | 256 | -544 | -4,352 | 6.6e-6 |
| chr17_409875_T_C | chr17:409875 | 256 | 96 | 3,328 | 1.3e-5 |
| chr17_410302_G_A | chr17:410302 | -192 | -1,312 | -6,144 | 2.0e-5 |
| chr17_410825_G_A | chr17:410825 | -192 | -224 | -4,096 | 1.3e-5 |
| chr17_410502_G_A | chr17:410502 | 192 | 256 | 3,328 | 6.6e-6 |
| chr17_410338_T_G | chr17:410338 | -64 | 704 | 15,872 | 6.6e-6 |
| chr17_410495_C_A | chr17:410495 | -64 | -512 | -4,096 | 6.6e-6 |
| chr17_410633_T_A | chr17:410633 | -64 | 1,472 | 3,584 | 2.0e-5 |
| chr17_410673_G_A | chr17:410673 | 0 | -288 | -4,864 | 2.0e-5 |
| chr17_410844_G_A | chr17:410844 | 0 | -320 | -3,584 | 6.6e-6 |
| chr17_409819_C_T | chr17:409819 | 0 | -96 | -3,328 | 6.6e-6 |
Showing 200 of 200 in this window. Scores are the raw center bin Δ, ALT minus REF; click a column to sort.