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chr1_1199584_G_T
For a non-coding regulatory variant the nearest gene by distance is frequently not the regulated gene.
Receptor variant-effect scores
PXR
-0.021Neutral
FXR
-0.054Neutral
AhR
-0.105LoF
-1 LoF0+1 GoF
Strongest effect: AhR LoF at p99-scaled -0.105. Impact is small on the receptor-specific p99 scale.
The p99-scaled score divides the raw delta by the receptor-specific 99th percentile of |delta| in the reference peak population, then clips to −1 to 1. It is a comparable effect scale, not a percentile rank. AhR is exploratory, from a single replicate.
Cross-annotations
No external database record for this variant. It is a scored in silico saturation SNV.
Mirrored from ClinVar, GTEx, GWAS Catalog, JASPAR/FIMO, gnomAD and phyloP. See Databases.
Region confidence
In receptor peaks: none