Home / Variant

chr1_960851_C_G

chr1:960851 · GRCh38C → Grs1004261159gnomAD AF <0.001%ATAC_only
nearest gene · KLHL17 · within gene

For a non-coding regulatory variant the nearest gene by distance is frequently not the regulated gene.

Receptor variant-effect scores

PXR
0.166GoF
FXR
-0.003Neutral
AhR
0.314GoF
-1 LoF0+1 GoF

Strongest effect: AhR GoF at p99-scaled 0.314. Impact is moderate on the receptor-specific p99 scale.

The p99-scaled score divides the raw delta by the receptor-specific 99th percentile of |delta| in the reference peak population, then clips to −1 to 1. It is a comparable effect scale, not a percentile rank. AhR is exploratory, from a single replicate.

Cross-annotations

No external database record for this variant. It is a scored in silico saturation SNV.

Mirrored from ClinVar, GTEx, GWAS Catalog, JASPAR/FIMO, gnomAD and phyloP. See Databases.

Region confidence

In receptor peaks: none